Wall clock time and date at job start Wed Apr 1 2020 03:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00192 * 2 1 4 4 H 1.48501 * 109.47539 * 270.00277 * 3 2 1 5 5 H 1.48502 * 109.47115 * 30.00361 * 3 2 1 6 6 H 1.48504 * 109.47162 * 150.00153 * 3 2 1 7 7 C 1.38720 * 119.99613 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00164 * 359.97438 * 7 2 1 9 9 O 1.34778 * 119.99706 * 179.97438 * 7 2 1 10 10 C 1.35576 * 117.00237 * 185.05336 * 9 7 2 11 11 C 1.39176 * 119.89326 * 354.45353 * 10 9 7 12 12 C 1.37604 * 120.09824 * 180.02562 * 11 10 9 13 13 C 1.40020 * 119.89504 * 359.97438 * 12 11 10 14 14 C 1.46961 * 120.09766 * 179.97438 * 13 12 11 15 15 C 1.35016 * 120.00254 * 180.02562 * 14 13 12 16 16 C 1.46263 * 120.00267 * 179.72394 * 15 14 13 17 17 O 1.21721 * 119.99512 * 0.27498 * 16 15 14 18 18 N 1.34771 * 119.99901 * 180.27474 * 16 15 14 19 19 C 1.46496 * 119.99870 * 180.02562 * 18 16 15 20 20 C 1.53008 * 109.47310 * 179.97438 * 19 18 16 21 21 H 1.08998 * 109.46567 * 55.00307 * 20 19 18 22 22 C 1.52997 * 109.46952 * 294.99966 * 20 19 18 23 23 C 1.53001 * 109.46712 * 179.97438 * 22 20 19 24 24 C 1.53004 * 109.47142 * 60.00293 * 23 22 20 25 25 C 1.53002 * 109.46870 * 299.99956 * 24 23 22 26 26 H 1.08999 * 109.46542 * 180.02562 * 25 24 23 27 27 N 1.46901 * 109.46833 * 299.99694 * 25 24 23 28 28 C 1.52994 * 109.47081 * 59.99803 * 25 24 23 29 29 C 1.40020 * 119.80456 * 0.25429 * 13 12 11 30 30 C 1.37604 * 119.89207 * 359.49130 * 29 13 12 31 31 H 0.97008 * 119.99833 * 359.97438 * 1 2 3 32 32 H 1.07998 * 119.95069 * 359.97438 * 11 10 9 33 33 H 1.07994 * 120.04666 * 180.02562 * 12 11 10 34 34 H 1.08000 * 119.99793 * 359.97438 * 14 13 12 35 35 H 1.08000 * 119.99952 * 0.02562 * 15 14 13 36 36 H 0.96999 * 120.00299 * 359.97438 * 18 16 15 37 37 H 1.09000 * 109.47255 * 299.99893 * 19 18 16 38 38 H 1.08999 * 109.47233 * 59.99627 * 19 18 16 39 39 H 1.08997 * 109.47023 * 299.99623 * 22 20 19 40 40 H 1.09004 * 109.46943 * 60.00053 * 22 20 19 41 41 H 1.08997 * 109.47393 * 299.99793 * 23 22 20 42 42 H 1.09005 * 109.47052 * 179.97438 * 23 22 20 43 43 H 1.08997 * 109.46947 * 179.97438 * 24 23 22 44 44 H 1.09004 * 109.46733 * 59.99522 * 24 23 22 45 45 H 1.00906 * 111.00170 * 300.00140 * 27 25 24 46 46 H 1.00893 * 111.00008 * 63.95559 * 27 25 24 47 47 H 1.09005 * 109.46931 * 180.02562 * 28 25 24 48 48 H 1.08997 * 109.47227 * 60.00428 * 28 25 24 49 49 H 1.07998 * 120.05304 * 179.74514 * 29 13 12 50 50 H 1.07997 * 119.94761 * 180.27601 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0086 -1.2014 -0.0005 8 1 1.4686 -2.1367 -0.0005 9 8 3.3564 -1.2014 -0.0011 10 6 3.9719 -2.4047 -0.1080 11 6 3.2168 -3.5737 -0.0942 12 6 3.8371 -4.7972 -0.2019 13 6 5.2302 -4.8648 -0.3260 14 6 5.8974 -6.1692 -0.4408 15 6 7.2408 -6.2322 -0.5598 16 6 7.9054 -7.5306 -0.6679 17 8 7.2468 -8.5542 -0.6556 18 7 9.2469 -7.5936 -0.7812 19 6 9.9125 -8.8941 -0.8900 20 6 11.4238 -8.6855 -1.0067 21 1 11.7738 -8.0872 -0.1655 22 6 11.7387 -7.9588 -2.3157 23 6 13.2499 -7.7496 -2.4319 24 6 13.9551 -9.1073 -2.4199 25 6 13.6400 -9.8341 -1.1109 26 1 14.1429 -10.8011 -1.1022 27 7 14.1115 -9.0274 0.0227 28 6 12.1289 -10.0432 -0.9947 29 6 5.9862 -3.6863 -0.3345 30 6 5.3567 -2.4670 -0.2316 31 1 -0.4850 0.8401 0.0004 32 1 2.1424 -3.5205 0.0019 33 1 3.2503 -5.7038 -0.1916 34 1 5.3132 -7.0775 -0.4290 35 1 7.8252 -5.3240 -0.5703 36 1 9.7716 -6.7779 -0.7913 37 1 9.6949 -9.4891 -0.0030 38 1 9.5486 -9.4155 -1.7754 39 1 11.3886 -8.5572 -3.1567 40 1 11.2366 -6.9913 -2.3240 41 1 13.5996 -7.1510 -1.5908 42 1 13.4744 -7.2322 -3.3648 43 1 15.0316 -8.9583 -2.5032 44 1 13.6053 -9.7059 -3.2611 45 1 15.1075 -8.8751 -0.0312 46 1 13.6140 -8.1511 0.0745 47 1 11.9044 -10.5605 -0.0618 48 1 11.7792 -10.6418 -1.8357 49 1 7.0612 -3.7340 -0.4259 50 1 5.9385 -1.5572 -0.2425 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493650891.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:38 Heat of formation + Delta-G solvation = -64.789363 kcal Electronic energy + Delta-G solvation = -28134.187694 eV Core-core repulsion = 24125.268826 eV Total energy + Delta-G solvation = -4008.918868 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.06176 -40.84436 -39.98306 -38.59528 -36.21689 -34.75963 -34.19615 -33.48732 -32.26077 -31.99639 -29.97993 -29.29213 -27.61303 -26.79405 -24.33725 -23.77000 -23.39487 -22.30184 -21.91638 -20.67612 -19.96937 -19.63577 -19.15171 -18.25804 -17.36985 -16.81078 -16.57975 -16.38485 -16.28378 -15.85929 -15.79178 -15.67548 -15.52791 -15.42403 -15.16395 -14.74519 -14.61336 -14.37790 -14.24964 -14.05543 -13.67794 -13.39487 -13.24286 -13.15453 -12.90231 -12.84690 -12.75540 -12.72152 -12.62289 -12.35317 -12.01821 -11.93656 -11.42529 -11.30751 -11.17007 -11.15663 -11.15434 -10.87393 -10.67278 -10.05066 -9.91490 -9.51588 -8.73597 -8.53558 -6.25420 -0.27351 0.55293 1.11368 1.32655 1.37522 1.52463 2.26341 2.29639 2.37197 2.80624 3.00835 3.15509 3.62284 3.67958 3.76806 3.82209 3.85785 3.92984 4.05010 4.21016 4.25985 4.27936 4.32948 4.35235 4.46269 4.50534 4.51611 4.63172 4.67272 4.69756 4.76198 4.84145 4.86549 5.03283 5.12357 5.15985 5.18087 5.21342 5.22327 5.28646 5.35739 5.37605 5.39869 5.45322 5.54696 5.59814 5.70672 5.80345 5.83744 6.14726 6.33640 6.62453 6.64792 6.79599 7.30622 7.50797 8.57289 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024075 B = 0.001507 C = 0.001442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.742805 B =18576.408327 C =19409.057354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.013 3.987 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.259 1.259 7 C -0.405 4.405 8 H 0.083 0.917 9 O -0.233 6.233 10 C 0.135 3.865 11 C -0.243 4.243 12 C -0.047 4.047 13 C -0.159 4.159 14 C 0.008 3.992 15 C -0.237 4.237 16 C 0.546 3.454 17 O -0.598 6.598 18 N -0.711 5.711 19 C 0.126 3.874 20 C -0.086 4.086 21 H 0.087 0.913 22 C -0.116 4.116 23 C -0.119 4.119 24 C -0.152 4.152 25 C 0.095 3.905 26 H 0.079 0.921 27 N -0.852 5.852 28 C -0.105 4.105 29 C -0.039 4.039 30 C -0.193 4.193 31 H 0.286 0.714 32 H 0.113 0.887 33 H 0.137 0.863 34 H 0.120 0.880 35 H 0.158 0.842 36 H 0.416 0.584 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.346 0.654 46 H 0.343 0.657 47 H 0.064 0.936 48 H 0.070 0.930 49 H 0.168 0.832 50 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.521 -15.578 -4.199 35.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.187 4.187 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.183 1.183 7 C -0.480 4.480 8 H 0.101 0.899 9 O -0.139 6.139 10 C 0.085 3.915 11 C -0.262 4.262 12 C -0.065 4.065 13 C -0.160 4.160 14 C -0.012 4.012 15 C -0.258 4.258 16 C 0.337 3.663 17 O -0.482 6.482 18 N -0.362 5.362 19 C 0.002 3.998 20 C -0.105 4.105 21 H 0.105 0.895 22 C -0.153 4.153 23 C -0.156 4.156 24 C -0.192 4.192 25 C -0.017 4.017 26 H 0.097 0.903 27 N -0.384 5.384 28 C -0.143 4.143 29 C -0.057 4.057 30 C -0.212 4.212 31 H 0.096 0.904 32 H 0.130 0.870 33 H 0.155 0.845 34 H 0.138 0.862 35 H 0.175 0.825 36 H 0.253 0.747 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.159 0.841 46 H 0.158 0.842 47 H 0.083 0.917 48 H 0.089 0.911 49 H 0.185 0.815 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 30.724 -16.558 -3.704 35.097 hybrid contribution -0.384 1.438 -0.720 1.654 sum 30.340 -15.119 -4.424 34.186 Atomic orbital electron populations 1.69709 1.07056 1.29843 1.49080 1.25330 0.95872 1.02308 0.95166 0.85204 0.78920 0.77156 0.79384 1.18967 1.19290 1.18313 1.20756 0.77964 0.96289 1.53036 0.89920 1.83459 1.21410 1.27544 1.81518 1.19948 0.93402 0.84927 0.93233 1.21220 1.00514 0.92967 1.11547 1.21288 0.94304 0.96608 0.94318 1.18817 0.92800 0.93261 1.11141 1.22162 0.94845 0.95167 0.88995 1.22810 0.95371 0.96824 1.10748 1.18599 0.82686 0.89545 0.75467 1.90788 1.66016 1.38225 1.53128 1.45737 1.06079 1.10405 1.74014 1.21369 0.92462 0.84805 1.01128 1.21286 0.91910 0.98098 0.99185 0.89482 1.21629 0.96396 1.00627 0.96657 1.21513 0.94721 0.97046 1.02341 1.22329 1.00477 0.97203 0.99185 1.21350 0.94937 0.97076 0.88331 0.90321 1.58987 1.10041 1.24254 1.45143 1.21518 0.94261 0.96138 1.02432 1.21359 1.00734 0.89479 0.94126 1.20501 0.90279 1.00039 1.10396 0.90391 0.86952 0.84494 0.86225 0.82459 0.74708 0.92732 0.92632 0.92233 0.91137 0.91484 0.91539 0.91583 0.91620 0.84087 0.84191 0.91734 0.91129 0.81479 0.84243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.55 13.96 21.62 0.30 -53.25 16 2 C 0.01 0.71 5.49 84.86 0.47 1.18 16 3 Si 0.97 43.71 28.62 68.60 1.96 45.67 16 4 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 5 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 6 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 7 C -0.40 -23.13 9.94 67.94 0.68 -22.45 16 8 H 0.08 4.97 5.41 -2.91 -0.02 4.96 16 9 O -0.23 -12.10 8.57 -20.29 -0.17 -12.28 16 10 C 0.14 6.01 6.66 22.72 0.15 6.16 16 11 C -0.24 -10.34 9.14 22.35 0.20 -10.14 16 12 C -0.05 -1.61 9.78 22.55 0.22 -1.39 16 13 C -0.16 -4.70 5.87 -20.13 -0.12 -4.82 16 14 C 0.01 0.21 9.45 23.82 0.23 0.44 16 15 C -0.24 -4.93 9.41 23.62 0.22 -4.71 16 16 C 0.55 12.74 7.74 86.33 0.67 13.41 16 17 O -0.60 -19.41 16.23 -4.42 -0.07 -19.48 16 18 N -0.71 -10.81 5.28 -467.49 -2.47 -13.28 16 19 C 0.13 1.86 5.07 86.38 0.44 2.29 16 20 C -0.09 -0.75 1.96 -10.79 -0.02 -0.77 16 21 H 0.09 0.68 6.57 -2.39 -0.02 0.67 16 22 C -0.12 -0.86 5.08 30.59 0.16 -0.71 16 23 C -0.12 -0.70 5.66 30.60 0.17 -0.53 16 24 C -0.15 -0.95 5.61 30.60 0.17 -0.78 16 25 C 0.09 0.73 3.69 44.91 0.17 0.90 16 26 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 27 N -0.85 -6.55 9.12 -168.68 -1.54 -8.09 16 28 C -0.11 -0.98 4.92 30.59 0.15 -0.83 16 29 C -0.04 -1.08 9.40 22.55 0.21 -0.87 16 30 C -0.19 -6.68 9.97 22.34 0.22 -6.46 16 31 H 0.29 15.30 8.31 -92.70 -0.77 14.53 16 32 H 0.11 5.28 5.62 -2.91 -0.02 5.26 16 33 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 34 H 0.12 3.27 7.52 -2.91 -0.02 3.25 16 35 H 0.16 2.18 6.07 -2.91 -0.02 2.17 16 36 H 0.42 3.66 7.63 -92.71 -0.71 2.95 16 37 H 0.05 0.97 8.14 -2.39 -0.02 0.96 16 38 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.07 0.47 7.18 -2.38 -0.02 0.45 16 41 H 0.07 0.32 6.76 -2.39 -0.02 0.30 16 42 H 0.07 0.41 8.14 -2.38 -0.02 0.39 16 43 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 44 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 45 H 0.35 1.87 9.04 -89.69 -0.81 1.06 16 46 H 0.34 2.24 5.44 -89.70 -0.49 1.75 16 47 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 48 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 49 H 0.17 2.98 6.16 -2.91 -0.02 2.96 16 50 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -70.14 399.05 1.38 -68.76 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: -1.02 Total: 22.01 kcal Atomic # 6 Polarization: -34.45 SS G_CDS: 4.38 Total: -30.07 kcal Atomic # 7 Polarization: -70.91 SS G_CDS: -3.70 Total: -74.61 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -0.25 Total: -31.76 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.96 Total: 45.67 kcal Total: -70.14 1.38 -68.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493650891.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.974 kcal (2) G-P(sol) polarization free energy of solvation -70.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds