Wall clock time and date at job start Wed Apr 1 2020 03:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99629 * 2 1 4 4 H 1.48501 * 109.47124 * 269.99423 * 3 2 1 5 5 H 1.48497 * 109.47346 * 29.99724 * 3 2 1 6 6 H 1.48501 * 109.47243 * 149.99632 * 3 2 1 7 7 C 1.38712 * 120.00176 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99805 * 180.02562 * 7 2 1 9 9 O 1.34785 * 120.00162 * 0.02562 * 7 2 1 10 10 C 1.35564 * 116.99993 * 185.06280 * 9 7 2 11 11 C 1.39181 * 119.90182 * 354.35321 * 10 9 7 12 12 C 1.37595 * 120.10128 * 180.02562 * 11 10 9 13 13 C 1.40021 * 119.89888 * 0.02562 * 12 11 10 14 14 C 1.46967 * 120.09842 * 179.97438 * 13 12 11 15 15 C 1.35017 * 119.99869 * 136.67789 * 14 13 12 16 16 C 1.46254 * 120.00148 * 348.68706 * 15 14 13 17 17 O 1.21728 * 120.00098 * 353.21112 * 16 15 14 18 18 N 1.34778 * 120.00238 * 173.21041 * 16 15 14 19 19 C 1.46504 * 120.00267 * 180.02562 * 18 16 15 20 20 C 1.52995 * 109.47018 * 180.02562 * 19 18 16 21 21 H 1.08995 * 109.47831 * 54.99851 * 20 19 18 22 22 C 1.52999 * 109.47219 * 294.99439 * 20 19 18 23 23 C 1.52995 * 109.47241 * 180.02562 * 22 20 19 24 24 C 1.53001 * 109.47514 * 60.00253 * 23 22 20 25 25 C 1.52999 * 109.46660 * 300.00102 * 24 23 22 26 26 H 1.09004 * 109.46747 * 179.97438 * 25 24 23 27 27 N 1.46899 * 109.47048 * 299.99634 * 25 24 23 28 28 C 1.52999 * 109.46839 * 174.99852 * 20 19 18 29 29 C 1.40021 * 119.79958 * 0.24822 * 13 12 11 30 30 C 1.37597 * 119.89586 * 359.46804 * 29 13 12 31 31 H 0.97005 * 120.00422 * 0.02562 * 1 2 3 32 32 H 1.08002 * 119.94502 * 359.97438 * 11 10 9 33 33 H 1.08002 * 120.04494 * 180.02562 * 12 11 10 34 34 H 1.07994 * 119.99841 * 316.68395 * 14 13 12 35 35 H 1.07998 * 120.00431 * 168.68281 * 15 14 13 36 36 H 0.96999 * 120.00039 * 359.97438 * 18 16 15 37 37 H 1.08993 * 109.47178 * 59.99671 * 19 18 16 38 38 H 1.08998 * 109.46828 * 299.99850 * 19 18 16 39 39 H 1.09004 * 109.46747 * 60.00162 * 22 20 19 40 40 H 1.09004 * 109.46936 * 300.00605 * 22 20 19 41 41 H 1.09004 * 109.47326 * 299.99970 * 23 22 20 42 42 H 1.09005 * 109.47193 * 180.02562 * 23 22 20 43 43 H 1.08995 * 109.47412 * 179.97438 * 24 23 22 44 44 H 1.08995 * 109.46765 * 59.99519 * 24 23 22 45 45 H 1.00898 * 110.99998 * 300.00220 * 27 25 24 46 46 H 1.00893 * 111.00081 * 63.96131 * 27 25 24 47 47 H 1.09001 * 109.47380 * 59.99965 * 28 20 19 48 48 H 1.09000 * 109.47664 * 299.99652 * 28 20 19 49 49 H 1.07998 * 120.04944 * 179.74906 * 29 13 12 50 50 H 1.07994 * 119.95102 * 180.29381 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5465 1.4404 0.7001 7 6 2.0087 -1.2013 0.0005 8 1 3.0887 -1.2012 0.0010 9 8 1.3348 -2.3686 0.0005 10 6 2.0691 -3.5031 0.1077 11 6 3.4591 -3.4339 0.0926 12 6 4.2084 -4.5829 0.2005 13 6 3.5704 -5.8231 0.3251 14 6 4.3665 -7.0531 0.4401 15 6 4.0218 -7.9986 1.3403 16 6 3.0198 -7.7031 2.3638 17 8 2.5871 -6.5716 2.4833 18 7 2.5754 -8.6836 3.1748 19 6 1.5712 -8.3878 4.1997 20 6 1.2438 -9.6646 4.9764 21 1 2.1627 -10.0910 5.3786 22 6 0.5799 -10.6755 4.0393 23 6 0.2519 -11.9521 4.8162 24 6 -0.7019 -11.6192 5.9652 25 6 -0.0380 -10.6082 6.9023 26 1 -0.7177 -10.3706 7.7207 27 7 1.2002 -11.1831 7.4448 28 6 0.2902 -9.3319 6.1257 29 6 2.1718 -5.8884 0.3340 30 6 1.4307 -4.7336 0.2314 31 1 -0.4851 0.8401 -0.0004 32 1 3.9503 -2.4770 -0.0048 33 1 5.2870 -4.5282 0.1891 34 1 5.2271 -7.2007 -0.1953 35 1 4.4860 -8.9730 1.3046 36 1 2.9199 -9.5853 3.0794 37 1 0.6666 -8.0096 3.7236 38 1 1.9623 -7.6361 4.8853 39 1 1.2593 -10.9125 3.2205 40 1 -0.3391 -10.2491 3.6371 41 1 1.1707 -12.3787 5.2187 42 1 -0.2206 -12.6725 4.1485 43 1 -0.9359 -12.5287 6.5184 44 1 -1.6206 -11.1926 5.5627 45 1 1.0101 -12.0279 7.9626 46 1 1.8721 -11.3520 6.7113 47 1 -0.6288 -8.9056 5.7235 48 1 0.7630 -8.6117 6.7934 49 1 1.6755 -6.8432 0.4259 50 1 0.3519 -4.7824 0.2430 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493650893.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:43 Heat of formation + Delta-G solvation = -29.033165 kcal Electronic energy + Delta-G solvation = -29349.899007 eV Core-core repulsion = 25342.530644 eV Total energy + Delta-G solvation = -4007.368363 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.12770 -39.37937 -38.60125 -36.54043 -35.12943 -33.01524 -32.83391 -32.11791 -31.53825 -30.08962 -28.85888 -28.10160 -26.15439 -25.31279 -23.07448 -22.81231 -21.77324 -21.46804 -20.84653 -19.58756 -19.06277 -17.90634 -17.24332 -16.63555 -16.57028 -15.77590 -15.53848 -15.08385 -15.03940 -14.69279 -14.59804 -14.44513 -14.15474 -13.97896 -13.59135 -13.39006 -13.21254 -13.10139 -12.84598 -12.58498 -12.48602 -12.32154 -12.23369 -12.15393 -12.03789 -11.67211 -11.49216 -11.33310 -10.98956 -10.86222 -10.65816 -10.60275 -10.58218 -10.49904 -10.39061 -9.46051 -9.38020 -9.12874 -9.05956 -8.90141 -8.66897 -7.88965 -6.83284 -6.43408 -3.99136 1.28075 2.45459 2.73498 3.15200 3.16844 3.21100 3.38085 3.69080 3.99258 4.15729 4.23696 4.32263 4.38663 4.72433 4.73698 4.81766 4.88289 5.03673 5.06876 5.11310 5.15208 5.19087 5.25289 5.28848 5.38416 5.48784 5.54436 5.59151 5.64746 5.67250 5.75765 5.76460 5.79679 5.87772 5.89191 5.98150 6.08393 6.27889 6.36299 6.46676 6.58681 6.63154 6.77328 6.82001 7.04786 7.06605 7.15152 7.39273 7.48159 7.53201 7.71950 7.95275 8.03394 8.60037 9.02305 9.74517 10.74487 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015023 B = 0.002068 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.337939 B =13537.146370 C =14653.146338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.038 3.962 3 Si 0.942 3.058 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.389 4.389 8 H 0.094 0.906 9 O -0.173 6.173 10 C 0.171 3.829 11 C -0.251 4.251 12 C -0.042 4.042 13 C -0.189 4.189 14 C 0.027 3.973 15 C -0.267 4.267 16 C 0.537 3.463 17 O -0.511 6.511 18 N -0.736 5.736 19 C 0.126 3.874 20 C -0.098 4.098 21 H 0.077 0.923 22 C -0.117 4.117 23 C -0.121 4.121 24 C -0.156 4.156 25 C 0.092 3.908 26 H 0.081 0.919 27 N -0.844 5.844 28 C -0.107 4.107 29 C 0.013 3.987 30 C -0.203 4.203 31 H 0.270 0.730 32 H 0.126 0.874 33 H 0.106 0.894 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.393 0.607 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.057 0.943 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.069 0.931 45 H 0.338 0.662 46 H 0.340 0.660 47 H 0.071 0.929 48 H 0.074 0.926 49 H 0.100 0.900 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.804 -25.222 9.248 27.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.465 4.465 8 H 0.111 0.889 9 O -0.075 6.075 10 C 0.116 3.884 11 C -0.270 4.270 12 C -0.060 4.060 13 C -0.190 4.190 14 C 0.007 3.993 15 C -0.288 4.288 16 C 0.327 3.673 17 O -0.387 6.387 18 N -0.389 5.389 19 C 0.003 3.997 20 C -0.117 4.117 21 H 0.095 0.905 22 C -0.155 4.155 23 C -0.158 4.158 24 C -0.196 4.196 25 C -0.020 4.020 26 H 0.099 0.901 27 N -0.375 5.375 28 C -0.145 4.145 29 C -0.005 4.005 30 C -0.222 4.222 31 H 0.080 0.920 32 H 0.143 0.857 33 H 0.124 0.876 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.227 0.773 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.087 0.913 45 H 0.150 0.850 46 H 0.155 0.845 47 H 0.090 0.910 48 H 0.093 0.907 49 H 0.119 0.881 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.093 -23.449 9.745 25.581 hybrid contribution 0.442 -0.637 -0.535 0.942 sum 3.535 -24.086 9.210 26.028 Atomic orbital electron populations 1.70025 1.06018 1.27722 1.45719 1.25324 0.95848 0.98906 0.96529 0.85698 0.78976 0.79992 0.78693 1.19859 1.20238 1.19135 1.21391 0.91914 0.80796 1.52445 0.88899 1.83905 1.34759 1.11649 1.77236 1.19524 0.90262 0.87733 0.90831 1.20951 0.93660 0.98784 1.13612 1.20741 0.97877 0.91575 0.95823 1.18289 0.93015 0.92243 1.15454 1.22327 0.93866 0.91380 0.91734 1.22598 1.05256 1.00905 1.00074 1.18495 0.81940 0.84863 0.82044 1.91005 1.57126 1.20509 1.70085 1.45982 1.44192 1.12134 1.36596 1.21287 0.92104 0.96347 0.90010 1.21377 0.99293 0.95379 0.95612 0.90456 1.21644 1.01156 0.94991 0.97679 1.21529 0.99263 0.97700 0.97333 1.22367 0.99699 0.99785 0.97718 1.21405 0.91096 0.93877 0.95591 0.90094 1.58986 1.12396 1.35294 1.30831 1.21537 0.99649 0.97068 0.96244 1.20427 0.92100 0.96164 0.91853 1.19999 0.99280 0.90254 1.12691 0.91982 0.85663 0.87628 0.86141 0.86278 0.77321 0.91549 0.91564 0.91752 0.91420 0.92391 0.91824 0.92228 0.91258 0.84979 0.84534 0.91049 0.90690 0.88147 0.86886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.73 13.67 55.48 0.76 -24.97 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 20.96 29.55 -169.99 -5.02 15.93 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.39 -11.21 9.48 30.91 0.29 -10.92 16 8 H 0.09 2.48 5.18 -52.49 -0.27 2.21 16 9 O -0.17 -5.15 9.74 0.75 0.01 -5.14 16 10 C 0.17 4.42 6.66 -38.88 -0.26 4.16 16 11 C -0.25 -5.81 9.14 -39.47 -0.36 -6.17 16 12 C -0.04 -0.83 9.78 -39.15 -0.38 -1.21 16 13 C -0.19 -3.55 4.54 -105.03 -0.48 -4.02 16 14 C 0.03 0.38 9.80 -37.19 -0.36 0.01 16 15 C -0.27 -3.38 9.90 -37.51 -0.37 -3.75 16 16 C 0.54 7.95 6.77 -13.04 -0.09 7.86 16 17 O -0.51 -10.12 12.18 5.16 0.06 -10.05 16 18 N -0.74 -7.92 5.28 -61.76 -0.33 -8.24 16 19 C 0.13 1.35 5.06 -4.04 -0.02 1.33 16 20 C -0.10 -0.71 1.97 -90.62 -0.18 -0.89 16 21 H 0.08 0.54 6.57 -51.93 -0.34 0.19 16 22 C -0.12 -0.76 5.08 -26.73 -0.14 -0.90 16 23 C -0.12 -0.65 5.66 -26.73 -0.15 -0.80 16 24 C -0.16 -0.87 5.61 -26.73 -0.15 -1.02 16 25 C 0.09 0.59 3.69 -67.73 -0.25 0.34 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 27 N -0.84 -5.19 9.12 -4.68 -0.04 -5.24 16 28 C -0.11 -0.80 4.91 -26.75 -0.13 -0.93 16 29 C 0.01 0.27 6.60 -39.15 -0.26 0.01 16 30 C -0.20 -4.73 9.97 -39.47 -0.39 -5.13 16 31 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.13 2.87 5.62 -52.49 -0.29 2.57 16 33 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 34 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.39 3.02 7.63 -40.82 -0.31 2.70 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.40 7.18 -51.93 -0.37 0.03 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.28 6.76 -51.93 -0.35 -0.07 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.34 1.63 9.04 -39.29 -0.36 1.28 16 46 H 0.34 1.93 5.44 -39.30 -0.21 1.71 16 47 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.10 1.86 7.02 -52.49 -0.37 1.49 16 50 H 0.11 2.57 8.06 -52.49 -0.42 2.15 16 LS Contribution 395.25 15.07 5.96 5.96 Total: -1.00 -34.06 395.25 -9.90 -43.95 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -7.51 Total: 8.87 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: -3.78 Total: -21.07 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.39 Total: -38.45 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: 0.07 Total: -15.19 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.06 -9.90 -43.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493650893.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.918 kcal (2) G-P(sol) polarization free energy of solvation -34.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds