Wall clock time and date at job start Wed Apr 1 2020 03:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99629 * 2 1 4 4 H 1.48501 * 109.47124 * 269.99423 * 3 2 1 5 5 H 1.48497 * 109.47346 * 29.99724 * 3 2 1 6 6 H 1.48501 * 109.47243 * 149.99632 * 3 2 1 7 7 C 1.38712 * 120.00176 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99805 * 180.02562 * 7 2 1 9 9 O 1.34785 * 120.00162 * 0.02562 * 7 2 1 10 10 C 1.35564 * 116.99993 * 185.06280 * 9 7 2 11 11 C 1.39181 * 119.90182 * 354.35321 * 10 9 7 12 12 C 1.37595 * 120.10128 * 180.02562 * 11 10 9 13 13 C 1.40021 * 119.89888 * 0.02562 * 12 11 10 14 14 C 1.46967 * 120.09842 * 179.97438 * 13 12 11 15 15 C 1.35017 * 119.99869 * 136.67789 * 14 13 12 16 16 C 1.46254 * 120.00148 * 348.68706 * 15 14 13 17 17 O 1.21728 * 120.00098 * 353.21112 * 16 15 14 18 18 N 1.34778 * 120.00238 * 173.21041 * 16 15 14 19 19 C 1.46504 * 120.00267 * 180.02562 * 18 16 15 20 20 C 1.52995 * 109.47018 * 180.02562 * 19 18 16 21 21 H 1.08995 * 109.47831 * 54.99851 * 20 19 18 22 22 C 1.52999 * 109.47219 * 294.99439 * 20 19 18 23 23 C 1.52995 * 109.47241 * 180.02562 * 22 20 19 24 24 C 1.53001 * 109.47514 * 60.00253 * 23 22 20 25 25 C 1.52999 * 109.46660 * 300.00102 * 24 23 22 26 26 H 1.09004 * 109.46747 * 179.97438 * 25 24 23 27 27 N 1.46899 * 109.47048 * 299.99634 * 25 24 23 28 28 C 1.52999 * 109.46839 * 174.99852 * 20 19 18 29 29 C 1.40021 * 119.79958 * 0.24822 * 13 12 11 30 30 C 1.37597 * 119.89586 * 359.46804 * 29 13 12 31 31 H 0.97005 * 120.00422 * 0.02562 * 1 2 3 32 32 H 1.08002 * 119.94502 * 359.97438 * 11 10 9 33 33 H 1.08002 * 120.04494 * 180.02562 * 12 11 10 34 34 H 1.07994 * 119.99841 * 316.68395 * 14 13 12 35 35 H 1.07998 * 120.00431 * 168.68281 * 15 14 13 36 36 H 0.96999 * 120.00039 * 359.97438 * 18 16 15 37 37 H 1.08993 * 109.47178 * 59.99671 * 19 18 16 38 38 H 1.08998 * 109.46828 * 299.99850 * 19 18 16 39 39 H 1.09004 * 109.46747 * 60.00162 * 22 20 19 40 40 H 1.09004 * 109.46936 * 300.00605 * 22 20 19 41 41 H 1.09004 * 109.47326 * 299.99970 * 23 22 20 42 42 H 1.09005 * 109.47193 * 180.02562 * 23 22 20 43 43 H 1.08995 * 109.47412 * 179.97438 * 24 23 22 44 44 H 1.08995 * 109.46765 * 59.99519 * 24 23 22 45 45 H 1.00898 * 110.99998 * 300.00220 * 27 25 24 46 46 H 1.00893 * 111.00081 * 63.96131 * 27 25 24 47 47 H 1.09001 * 109.47380 * 59.99965 * 28 20 19 48 48 H 1.09000 * 109.47664 * 299.99652 * 28 20 19 49 49 H 1.07998 * 120.04944 * 179.74906 * 29 13 12 50 50 H 1.07994 * 119.95102 * 180.29381 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5465 1.4404 0.7001 7 6 2.0087 -1.2013 0.0005 8 1 3.0887 -1.2012 0.0010 9 8 1.3348 -2.3686 0.0005 10 6 2.0691 -3.5031 0.1077 11 6 3.4591 -3.4339 0.0926 12 6 4.2084 -4.5829 0.2005 13 6 3.5704 -5.8231 0.3251 14 6 4.3665 -7.0531 0.4401 15 6 4.0218 -7.9986 1.3403 16 6 3.0198 -7.7031 2.3638 17 8 2.5871 -6.5716 2.4833 18 7 2.5754 -8.6836 3.1748 19 6 1.5712 -8.3878 4.1997 20 6 1.2438 -9.6646 4.9764 21 1 2.1627 -10.0910 5.3786 22 6 0.5799 -10.6755 4.0393 23 6 0.2519 -11.9521 4.8162 24 6 -0.7019 -11.6192 5.9652 25 6 -0.0380 -10.6082 6.9023 26 1 -0.7177 -10.3706 7.7207 27 7 1.2002 -11.1831 7.4448 28 6 0.2902 -9.3319 6.1257 29 6 2.1718 -5.8884 0.3340 30 6 1.4307 -4.7336 0.2314 31 1 -0.4851 0.8401 -0.0004 32 1 3.9503 -2.4770 -0.0048 33 1 5.2870 -4.5282 0.1891 34 1 5.2271 -7.2007 -0.1953 35 1 4.4860 -8.9730 1.3046 36 1 2.9199 -9.5853 3.0794 37 1 0.6666 -8.0096 3.7236 38 1 1.9623 -7.6361 4.8853 39 1 1.2593 -10.9125 3.2205 40 1 -0.3391 -10.2491 3.6371 41 1 1.1707 -12.3787 5.2187 42 1 -0.2206 -12.6725 4.1485 43 1 -0.9359 -12.5287 6.5184 44 1 -1.6206 -11.1926 5.5627 45 1 1.0101 -12.0279 7.9626 46 1 1.8721 -11.3520 6.7113 47 1 -0.6288 -8.9056 5.7235 48 1 0.7630 -8.6117 6.7934 49 1 1.6755 -6.8432 0.4259 50 1 0.3519 -4.7824 0.2430 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493650893.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:41 Heat of formation + Delta-G solvation = -53.020362 kcal Electronic energy + Delta-G solvation = -29350.939170 eV Core-core repulsion = 25342.530644 eV Total energy + Delta-G solvation = -4008.408526 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.18406 -40.61077 -39.99781 -38.19883 -36.14728 -34.58721 -33.94062 -33.47859 -32.25446 -31.82103 -29.75892 -29.27630 -27.53822 -26.88932 -24.28322 -23.52813 -23.37345 -22.51862 -22.03150 -20.58983 -19.95267 -19.72464 -18.87691 -18.07314 -17.31532 -16.73661 -16.42164 -16.37471 -16.22771 -15.91279 -15.69470 -15.58495 -15.47430 -15.31521 -15.03674 -14.56120 -14.52965 -14.45925 -14.17383 -13.75529 -13.63312 -13.56205 -13.20390 -13.04621 -12.89138 -12.87363 -12.77133 -12.62921 -12.34850 -12.22354 -12.12405 -12.03511 -11.44383 -11.24256 -11.17590 -11.11540 -10.93398 -10.64021 -10.38350 -10.00465 -9.56025 -9.53146 -8.55179 -8.48550 -6.16037 0.00672 0.71594 1.13402 1.32973 1.45195 1.51779 2.16853 2.39398 2.51267 2.86911 3.20680 3.52494 3.61249 3.65710 3.76549 3.83385 4.01150 4.08003 4.15672 4.17337 4.19362 4.25313 4.31153 4.47607 4.49808 4.54750 4.60924 4.65447 4.67236 4.73724 4.77245 4.86624 5.01751 5.05844 5.09892 5.14553 5.16362 5.19827 5.26196 5.27721 5.33199 5.36030 5.46362 5.47531 5.59304 5.68275 5.72602 5.85643 6.02211 6.25361 6.31701 6.65396 6.75009 6.95074 7.48701 7.77376 8.74516 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015023 B = 0.002068 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.337939 B =13537.146370 C =14653.146338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.025 4.025 3 Si 1.023 2.977 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.254 1.254 7 C -0.415 4.415 8 H 0.102 0.898 9 O -0.231 6.231 10 C 0.126 3.874 11 C -0.259 4.259 12 C -0.048 4.048 13 C -0.160 4.160 14 C 0.003 3.997 15 C -0.229 4.229 16 C 0.522 3.478 17 O -0.571 6.571 18 N -0.712 5.712 19 C 0.128 3.872 20 C -0.082 4.082 21 H 0.091 0.909 22 C -0.115 4.115 23 C -0.116 4.116 24 C -0.153 4.153 25 C 0.097 3.903 26 H 0.076 0.924 27 N -0.851 5.851 28 C -0.109 4.109 29 C 0.015 3.985 30 C -0.222 4.222 31 H 0.273 0.727 32 H 0.120 0.880 33 H 0.148 0.852 34 H 0.170 0.830 35 H 0.176 0.824 36 H 0.414 0.586 37 H 0.044 0.956 38 H 0.045 0.955 39 H 0.075 0.925 40 H 0.053 0.947 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.061 0.939 45 H 0.347 0.653 46 H 0.344 0.656 47 H 0.063 0.937 48 H 0.060 0.940 49 H 0.119 0.881 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.466 -29.373 9.676 31.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.223 4.223 3 Si 0.841 3.159 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.177 1.177 7 C -0.491 4.491 8 H 0.120 0.880 9 O -0.138 6.138 10 C 0.075 3.925 11 C -0.279 4.279 12 C -0.066 4.066 13 C -0.161 4.161 14 C -0.016 4.016 15 C -0.250 4.250 16 C 0.313 3.687 17 O -0.451 6.451 18 N -0.365 5.365 19 C 0.003 3.997 20 C -0.101 4.101 21 H 0.109 0.891 22 C -0.152 4.152 23 C -0.154 4.154 24 C -0.192 4.192 25 C -0.015 4.015 26 H 0.095 0.905 27 N -0.383 5.383 28 C -0.147 4.147 29 C -0.003 4.003 30 C -0.242 4.242 31 H 0.082 0.918 32 H 0.138 0.862 33 H 0.166 0.834 34 H 0.187 0.813 35 H 0.193 0.807 36 H 0.252 0.748 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.093 0.907 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.161 0.839 46 H 0.159 0.841 47 H 0.081 0.919 48 H 0.079 0.921 49 H 0.136 0.864 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.795 -27.733 10.188 30.316 hybrid contribution -0.592 0.105 -0.497 0.780 sum 6.203 -27.627 9.691 29.928 Atomic orbital electron populations 1.70179 1.08150 1.28881 1.48717 1.26692 0.96920 1.02904 0.95752 0.84544 0.77715 0.74206 0.79428 1.18396 1.19485 1.17719 1.21885 0.92608 0.81388 1.53219 0.88025 1.83873 1.36300 1.12744 1.80850 1.20009 0.91741 0.87534 0.93168 1.21096 0.92785 1.00155 1.13829 1.21191 0.99836 0.90624 0.94979 1.18888 0.92766 0.94294 1.10107 1.22578 0.95384 0.89230 0.94417 1.23075 1.02275 1.02315 0.97310 1.19166 0.82165 0.84543 0.82843 1.91013 1.59328 1.23097 1.71710 1.45807 1.42992 1.12529 1.35174 1.21253 0.91010 0.97721 0.89680 1.21252 0.99852 0.93815 0.95150 0.89067 1.21623 1.00637 0.95149 0.97803 1.21503 0.99792 0.96997 0.97068 1.22328 0.99392 0.99801 0.97725 1.21300 0.91339 0.93400 0.95470 0.90534 1.58954 1.12229 1.35992 1.31116 1.21533 0.99275 0.97626 0.96295 1.20656 0.93214 0.95529 0.90916 1.20181 0.99199 0.91028 1.13763 0.91767 0.86228 0.83396 0.81320 0.80716 0.74819 0.93732 0.93697 0.90684 0.92850 0.91053 0.91251 0.91191 0.92011 0.83935 0.84079 0.91852 0.92145 0.86359 0.88214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -59.05 13.67 21.62 0.30 -58.75 16 2 C -0.03 -1.51 5.49 84.85 0.47 -1.05 16 3 Si 1.02 44.75 29.55 68.60 2.03 46.77 16 4 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 5 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 6 H -0.25 -10.36 7.11 99.48 0.71 -9.65 16 7 C -0.42 -25.64 9.48 67.93 0.64 -25.00 16 8 H 0.10 5.77 5.18 -2.91 -0.02 5.76 16 9 O -0.23 -15.04 9.74 -20.24 -0.20 -15.23 16 10 C 0.13 7.00 6.66 22.72 0.15 7.15 16 11 C -0.26 -12.44 9.14 22.34 0.20 -12.24 16 12 C -0.05 -1.84 9.78 22.55 0.22 -1.61 16 13 C -0.16 -5.62 4.54 -20.13 -0.09 -5.71 16 14 C 0.00 0.07 9.80 23.82 0.23 0.31 16 15 C -0.23 -4.41 9.90 23.61 0.23 -4.18 16 16 C 0.52 13.83 6.77 86.33 0.58 14.42 16 17 O -0.57 -22.21 12.18 -4.44 -0.05 -22.27 16 18 N -0.71 -13.12 5.28 -467.50 -2.47 -15.59 16 19 C 0.13 2.63 5.06 86.38 0.44 3.07 16 20 C -0.08 -1.06 1.97 -10.80 -0.02 -1.08 16 21 H 0.09 0.98 6.57 -2.39 -0.02 0.96 16 22 C -0.11 -1.21 5.08 30.59 0.16 -1.06 16 23 C -0.12 -0.91 5.66 30.59 0.17 -0.74 16 24 C -0.15 -1.40 5.61 30.59 0.17 -1.23 16 25 C 0.10 1.10 3.69 44.90 0.17 1.27 16 26 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 27 N -0.85 -8.57 9.12 -168.73 -1.54 -10.11 16 28 C -0.11 -1.60 4.91 30.58 0.15 -1.45 16 29 C 0.02 0.61 6.60 22.55 0.15 0.76 16 30 C -0.22 -11.07 9.97 22.34 0.22 -10.85 16 31 H 0.27 15.95 8.31 -92.70 -0.77 15.18 16 32 H 0.12 5.73 5.62 -2.91 -0.02 5.71 16 33 H 0.15 4.32 8.06 -2.91 -0.02 4.29 16 34 H 0.17 2.41 8.06 -2.91 -0.02 2.38 16 35 H 0.18 1.57 8.06 -2.91 -0.02 1.55 16 36 H 0.41 4.28 7.63 -92.71 -0.71 3.57 16 37 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.07 0.64 7.18 -2.39 -0.02 0.63 16 40 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.07 0.40 6.76 -2.39 -0.02 0.39 16 42 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 43 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.35 2.49 9.04 -89.70 -0.81 1.68 16 46 H 0.34 2.86 5.44 -89.70 -0.49 2.37 16 47 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.12 4.27 7.02 -2.91 -0.02 4.25 16 50 H 0.10 5.02 8.06 -2.91 -0.02 5.00 16 Total: -1.00 -84.56 395.25 1.29 -83.27 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: -1.03 Total: 31.11 kcal Atomic # 6 Polarization: -43.45 SS G_CDS: 4.25 Total: -39.20 kcal Atomic # 7 Polarization: -80.74 SS G_CDS: -3.71 Total: -84.45 kcal Atomic # 8 Polarization: -37.25 SS G_CDS: -0.25 Total: -37.50 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -84.56 1.29 -83.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493650893.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.247 kcal (2) G-P(sol) polarization free energy of solvation -84.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds