Wall clock time and date at job start Wed Apr 1 2020 03:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86796 * 119.99989 * 2 1 4 4 H 1.48497 * 109.47157 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47203 * 299.99602 * 3 2 1 6 6 H 1.48508 * 109.47334 * 59.99386 * 3 2 1 7 7 C 1.38715 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00131 * 180.02562 * 7 2 1 9 9 O 1.34787 * 120.00141 * 0.02562 * 7 2 1 10 10 C 1.35569 * 117.00051 * 185.86073 * 9 7 2 11 11 C 1.39180 * 119.89659 * 6.62706 * 10 9 7 12 12 C 1.37600 * 120.09930 * 180.02562 * 11 10 9 13 13 C 1.40028 * 119.89752 * 359.97438 * 12 11 10 14 14 C 1.46963 * 120.09687 * 179.97438 * 13 12 11 15 15 C 1.35026 * 119.99536 * 131.94178 * 14 13 12 16 16 C 1.46255 * 120.00040 * 349.12141 * 15 14 13 17 17 O 1.21726 * 120.00360 * 352.77628 * 16 15 14 18 18 N 1.34771 * 120.00109 * 172.78090 * 16 15 14 19 19 C 1.46933 * 120.63069 * 354.06207 * 18 16 15 20 20 C 1.53187 * 108.77518 * 233.58776 * 19 18 16 21 21 C 1.53037 * 109.31725 * 305.36386 * 20 19 18 22 22 C 1.53036 * 109.53713 * 61.36396 * 21 20 19 23 23 H 1.09005 * 109.50019 * 58.62332 * 22 21 20 24 24 C 1.52999 * 109.50058 * 178.68740 * 22 21 20 25 25 C 1.53004 * 109.47453 * 185.00588 * 24 22 21 26 26 N 1.46895 * 109.47246 * 180.02562 * 25 24 22 27 27 C 1.46930 * 120.63151 * 173.78674 * 18 16 15 28 28 C 1.40023 * 119.79741 * 0.26143 * 13 12 11 29 29 C 1.37597 * 119.89577 * 359.46194 * 28 13 12 30 30 H 0.96997 * 120.00023 * 0.02562 * 1 2 3 31 31 H 1.07999 * 119.95141 * 359.97438 * 11 10 9 32 32 H 1.08006 * 120.05276 * 180.02562 * 12 11 10 33 33 H 1.07992 * 120.00124 * 311.93461 * 14 13 12 34 34 H 1.07996 * 119.99993 * 169.12632 * 15 14 13 35 35 H 1.08992 * 109.58306 * 353.37688 * 19 18 16 36 36 H 1.09000 * 109.58671 * 113.80049 * 19 18 16 37 37 H 1.08994 * 109.50012 * 65.31830 * 20 19 18 38 38 H 1.09007 * 109.49454 * 185.41350 * 20 19 18 39 39 H 1.08998 * 109.46307 * 181.38733 * 21 20 19 40 40 H 1.09004 * 109.46098 * 301.34904 * 21 20 19 41 41 H 1.09007 * 109.46876 * 305.00123 * 24 22 21 42 42 H 1.08992 * 109.47521 * 64.99837 * 24 22 21 43 43 H 1.09007 * 109.46700 * 299.99643 * 25 24 22 44 44 H 1.08992 * 109.47370 * 59.99157 * 25 24 22 45 45 H 1.00897 * 111.00081 * 179.97438 * 26 25 24 46 46 H 1.00907 * 110.99824 * 303.94628 * 26 25 24 47 47 H 1.09001 * 109.58593 * 246.19639 * 27 18 16 48 48 H 1.08993 * 109.58946 * 6.62634 * 27 18 16 49 49 H 1.08000 * 120.04727 * 179.73983 * 28 13 12 50 50 H 1.08000 * 119.94683 * 180.29573 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7090 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8902 2.3966 1.2125 7 6 2.0087 -1.2013 0.0005 8 1 3.0887 -1.2013 0.0010 9 8 1.3348 -2.3686 0.0005 10 6 2.0676 -3.5024 0.1244 11 6 3.4329 -3.4212 0.3821 12 6 4.1809 -4.5693 0.5081 13 6 3.5662 -5.8206 0.3772 14 6 4.3609 -7.0496 0.5104 15 6 3.9244 -8.0534 1.3010 16 6 2.7957 -7.8343 2.2049 17 8 2.3342 -6.7164 2.3425 18 7 2.2667 -8.8702 2.8857 19 6 2.7252 -10.2434 2.6346 20 6 1.5087 -11.1196 2.3199 21 6 0.4882 -10.9951 3.4536 22 6 0.0211 -9.5420 3.5645 23 1 -0.4186 -9.2279 2.6178 24 6 -1.0232 -9.4247 4.6764 25 6 -1.5807 -8.0001 4.7044 26 7 -2.5829 -7.8873 5.7724 27 6 1.2247 -8.6472 3.8973 28 6 2.1933 -5.8972 0.1130 29 6 1.4523 -4.7439 -0.0057 30 1 -0.4850 0.8400 -0.0004 31 1 3.9062 -2.4557 0.4825 32 1 5.2403 -4.5054 0.7085 33 1 5.2940 -7.1499 -0.0241 34 1 4.4087 -9.0181 1.2658 35 1 3.4099 -10.2506 1.7867 36 1 3.2325 -10.6269 3.5199 37 1 1.0555 -10.7906 1.3848 38 1 1.8235 -12.1590 2.2262 39 1 -0.3676 -11.6367 3.2439 40 1 0.9496 -11.3008 4.3926 41 1 -1.8342 -10.1285 4.4890 42 1 -0.5593 -9.6522 5.6361 43 1 -0.7698 -7.2962 4.8918 44 1 -2.0446 -7.7726 3.7447 45 1 -2.9662 -6.9548 5.8116 46 1 -3.3132 -8.5741 5.6570 47 1 1.6121 -8.9032 4.8835 48 1 0.9191 -7.6010 3.8827 49 1 1.7158 -6.8602 0.0071 50 1 0.3924 -4.8021 -0.2047 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493773106.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:04 Heat of formation + Delta-G solvation = -43.015199 kcal Electronic energy + Delta-G solvation = -30032.825464 eV Core-core repulsion = 26024.850795 eV Total energy + Delta-G solvation = -4007.974669 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.35917 -40.63214 -39.14064 -37.99487 -36.50683 -34.65822 -34.16176 -33.77074 -32.49660 -31.83618 -29.85315 -28.35852 -27.45933 -26.62484 -24.42686 -24.06389 -23.47482 -22.36900 -22.00949 -20.93727 -19.94085 -19.36248 -18.73463 -18.39344 -17.17978 -16.71866 -16.45000 -16.37144 -16.29888 -15.79043 -15.72367 -15.54724 -15.42655 -15.16577 -14.99165 -14.63568 -14.51070 -14.34692 -14.16055 -14.13127 -13.73817 -13.59383 -13.56213 -13.13577 -13.01711 -12.83937 -12.66823 -12.34264 -12.25313 -12.14927 -12.09542 -11.95783 -11.70851 -11.55060 -11.29270 -11.21062 -10.91078 -10.56396 -10.39489 -9.77065 -9.73268 -9.41525 -8.59642 -8.50187 -6.17071 0.02654 0.68577 1.06471 1.32416 1.43033 1.51869 2.15794 2.16318 2.45096 2.84738 3.19767 3.44515 3.48931 3.66599 3.84674 3.90049 3.94171 4.02994 4.11020 4.13261 4.15544 4.25262 4.30471 4.36554 4.46048 4.53119 4.55897 4.63813 4.68795 4.75000 4.84682 4.87679 4.90475 4.99361 5.02506 5.08062 5.09604 5.12035 5.23483 5.24677 5.26315 5.29613 5.43246 5.49747 5.64158 5.69021 5.71420 5.82435 6.00791 6.11121 6.23319 6.50409 6.57012 6.94244 7.39357 7.76692 8.73845 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011457 B = 0.002729 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.279553 B =10258.017715 C =12201.210445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.025 4.025 3 Si 1.022 2.978 4 H -0.250 1.250 5 H -0.265 1.265 6 H -0.268 1.268 7 C -0.414 4.414 8 H 0.102 0.898 9 O -0.233 6.233 10 C 0.125 3.875 11 C -0.253 4.253 12 C -0.051 4.051 13 C -0.150 4.150 14 C 0.004 3.996 15 C -0.229 4.229 16 C 0.524 3.476 17 O -0.571 6.571 18 N -0.612 5.612 19 C 0.100 3.900 20 C -0.132 4.132 21 C -0.109 4.109 22 C -0.093 4.093 23 H 0.053 0.947 24 C -0.098 4.098 25 C 0.055 3.945 26 N -0.855 5.855 27 C 0.115 3.885 28 C 0.002 3.998 29 C -0.216 4.216 30 H 0.273 0.727 31 H 0.119 0.881 32 H 0.147 0.853 33 H 0.171 0.829 34 H 0.175 0.825 35 H 0.106 0.894 36 H 0.084 0.916 37 H 0.054 0.946 38 H 0.103 0.897 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.053 0.947 44 H 0.015 0.985 45 H 0.345 0.655 46 H 0.348 0.652 47 H 0.074 0.926 48 H 0.055 0.945 49 H 0.117 0.883 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.618 -27.557 6.582 29.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.222 4.222 3 Si 0.841 3.159 4 H -0.173 1.173 5 H -0.190 1.190 6 H -0.193 1.193 7 C -0.490 4.490 8 H 0.119 0.881 9 O -0.139 6.139 10 C 0.074 3.926 11 C -0.272 4.272 12 C -0.069 4.069 13 C -0.150 4.150 14 C -0.016 4.016 15 C -0.250 4.250 16 C 0.317 3.683 17 O -0.451 6.451 18 N -0.345 5.345 19 C -0.022 4.022 20 C -0.170 4.170 21 C -0.146 4.146 22 C -0.113 4.113 23 H 0.071 0.929 24 C -0.136 4.136 25 C -0.076 4.076 26 N -0.386 5.386 27 C -0.008 4.008 28 C -0.016 4.016 29 C -0.236 4.236 30 H 0.082 0.918 31 H 0.137 0.863 32 H 0.165 0.835 33 H 0.189 0.811 34 H 0.192 0.808 35 H 0.124 0.876 36 H 0.102 0.898 37 H 0.073 0.927 38 H 0.121 0.879 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.072 0.928 44 H 0.033 0.967 45 H 0.158 0.842 46 H 0.161 0.839 47 H 0.092 0.908 48 H 0.074 0.926 49 H 0.135 0.865 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.566 -26.992 7.134 28.680 hybrid contribution -1.176 1.632 -0.663 2.118 sum 5.390 -25.359 6.471 26.721 Atomic orbital electron populations 1.70183 1.08171 1.28811 1.48800 1.26680 0.96898 1.02879 0.95742 0.84493 0.78265 0.74517 0.78661 1.17323 1.18989 1.19344 1.21904 0.92543 0.81397 1.53117 0.88092 1.83888 1.36274 1.12805 1.80934 1.19983 0.91755 0.87497 0.93374 1.21098 0.93583 0.99997 1.12545 1.21161 0.99689 0.90515 0.95572 1.18863 0.93340 0.93923 1.08895 1.22614 0.96807 0.89210 0.92923 1.23184 0.99832 1.01816 1.00127 1.19168 0.83796 0.83981 0.81405 1.90993 1.62823 1.24967 1.66359 1.48189 1.39137 1.07855 1.39343 1.22094 0.97364 0.79397 1.03317 1.21928 0.95692 1.01055 0.98352 1.21551 0.99495 0.93924 0.99666 1.21502 0.94478 0.96869 0.98419 0.92889 1.21479 0.98135 0.95189 0.98816 1.21844 0.95289 0.98578 0.91906 1.58749 1.19982 1.10447 1.49383 1.21691 0.88084 0.99895 0.91084 1.20618 0.92778 0.95353 0.92845 1.20165 0.99590 0.90740 1.13084 0.91775 0.86292 0.83516 0.81145 0.80766 0.87626 0.89769 0.92734 0.87885 0.90610 0.90487 0.90387 0.90582 0.92846 0.96675 0.84210 0.83865 0.90755 0.92602 0.86515 0.88211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -59.02 13.67 21.62 0.30 -58.73 16 2 C -0.02 -1.47 5.49 84.86 0.47 -1.01 16 3 Si 1.02 44.68 29.55 68.60 2.03 46.71 16 4 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 5 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 6 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 7 C -0.41 -25.52 9.42 67.93 0.64 -24.88 16 8 H 0.10 5.74 5.30 -2.91 -0.02 5.72 16 9 O -0.23 -15.12 9.74 -20.31 -0.20 -15.32 16 10 C 0.12 6.91 6.65 22.72 0.15 7.06 16 11 C -0.25 -12.19 9.10 22.35 0.20 -11.99 16 12 C -0.05 -1.97 9.78 22.55 0.22 -1.75 16 13 C -0.15 -5.30 4.33 -20.12 -0.09 -5.39 16 14 C 0.00 0.09 9.77 23.82 0.23 0.32 16 15 C -0.23 -4.72 9.12 23.62 0.22 -4.50 16 16 C 0.52 14.87 6.81 86.33 0.59 15.46 16 17 O -0.57 -22.92 11.91 -4.43 -0.05 -22.97 16 18 N -0.61 -13.09 2.97 -823.25 -2.44 -15.54 16 19 C 0.10 1.14 6.29 86.36 0.54 1.68 16 20 C -0.13 -1.29 6.08 30.67 0.19 -1.10 16 21 C -0.11 -1.20 5.16 30.62 0.16 -1.05 16 22 C -0.09 -1.62 2.35 -10.57 -0.02 -1.64 16 23 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 24 C -0.10 -1.60 4.94 30.60 0.15 -1.45 16 25 C 0.05 1.19 6.55 86.31 0.57 1.75 16 26 N -0.86 -16.16 9.62 -186.72 -1.80 -17.95 16 27 C 0.12 2.60 5.36 86.51 0.46 3.06 16 28 C 0.00 0.09 6.78 22.55 0.15 0.25 16 29 C -0.22 -10.79 9.97 22.34 0.22 -10.56 16 30 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 31 H 0.12 5.75 5.72 -2.91 -0.02 5.73 16 32 H 0.15 4.37 8.06 -2.91 -0.02 4.35 16 33 H 0.17 2.48 8.06 -2.91 -0.02 2.46 16 34 H 0.18 1.85 6.11 -2.91 -0.02 1.83 16 35 H 0.11 0.82 5.48 -2.39 -0.01 0.81 16 36 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.05 0.70 8.14 -2.39 -0.02 0.69 16 38 H 0.10 0.49 8.14 -2.38 -0.02 0.47 16 39 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 42 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.05 1.40 6.70 -2.38 -0.02 1.39 16 44 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 45 H 0.35 6.31 9.08 -89.70 -0.81 5.50 16 46 H 0.35 5.09 8.99 -89.69 -0.81 4.29 16 47 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.06 1.72 5.72 -2.39 -0.01 1.71 16 49 H 0.12 4.26 7.46 -2.91 -0.02 4.24 16 50 H 0.10 5.02 8.06 -2.91 -0.02 5.00 16 Total: -1.00 -85.46 397.25 2.23 -83.23 By element: Atomic # 1 Polarization: 36.96 SS G_CDS: -0.65 Total: 36.31 kcal Atomic # 6 Polarization: -40.79 SS G_CDS: 5.05 Total: -35.74 kcal Atomic # 7 Polarization: -88.28 SS G_CDS: -3.94 Total: -92.22 kcal Atomic # 8 Polarization: -38.04 SS G_CDS: -0.25 Total: -38.29 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -85.46 2.23 -83.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493773106.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.215 kcal (2) G-P(sol) polarization free energy of solvation -85.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds