Wall clock time and date at job start Wed Apr 1 2020 03:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31503 * 1 3 3 Si 1.86803 * 119.99657 * 2 1 4 4 H 1.48498 * 109.47209 * 240.00119 * 3 2 1 5 5 H 1.48497 * 109.47263 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47124 * 120.00312 * 3 2 1 7 7 C 1.38717 * 120.00075 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99700 * 180.02562 * 7 2 1 9 9 O 1.34776 * 120.00152 * 359.97438 * 7 2 1 10 10 C 1.35569 * 117.00002 * 185.07012 * 9 7 2 11 11 C 1.39181 * 119.89778 * 354.33258 * 10 9 7 12 12 C 1.37601 * 120.10030 * 180.02562 * 11 10 9 13 13 C 1.40027 * 119.90064 * 0.02562 * 12 11 10 14 14 C 1.46952 * 120.10291 * 179.97438 * 13 12 11 15 15 C 1.35026 * 120.00408 * 136.58979 * 14 13 12 16 16 C 1.46256 * 119.99588 * 348.68989 * 15 14 13 17 17 O 1.21722 * 120.00098 * 353.21014 * 16 15 14 18 18 N 1.34769 * 119.99982 * 173.21165 * 16 15 14 19 19 C 1.46498 * 120.00017 * 179.97438 * 18 16 15 20 20 C 1.53003 * 109.47255 * 179.97438 * 19 18 16 21 21 C 1.53002 * 109.47483 * 179.97438 * 20 19 18 22 22 C 1.53002 * 109.47304 * 179.97438 * 21 20 19 23 23 H 1.08996 * 109.87918 * 305.42776 * 22 21 20 24 24 C 1.54315 * 109.88559 * 184.22109 * 22 21 20 25 25 C 1.55138 * 103.01690 * 218.31200 * 24 22 21 26 26 C 1.54899 * 101.65669 * 35.65793 * 25 24 22 27 27 N 1.47447 * 109.88354 * 66.45643 * 22 21 20 28 28 C 1.40026 * 119.79634 * 0.24982 * 13 12 11 29 29 C 1.37605 * 119.89389 * 359.49147 * 28 13 12 30 30 H 0.96998 * 120.00615 * 359.97438 * 1 2 3 31 31 H 1.07998 * 119.94876 * 0.02562 * 11 10 9 32 32 H 1.08000 * 120.05110 * 179.97438 * 12 11 10 33 33 H 1.08005 * 119.99921 * 316.58894 * 14 13 12 34 34 H 1.07994 * 120.00436 * 168.40606 * 15 14 13 35 35 H 0.97007 * 120.00059 * 359.97438 * 18 16 15 36 36 H 1.09006 * 109.47455 * 299.99518 * 19 18 16 37 37 H 1.09003 * 109.47411 * 59.99808 * 19 18 16 38 38 H 1.08998 * 109.46988 * 299.99651 * 20 19 18 39 39 H 1.09003 * 109.46983 * 59.99650 * 20 19 18 40 40 H 1.08998 * 109.46913 * 299.99929 * 21 20 19 41 41 H 1.09003 * 109.47107 * 59.99959 * 21 20 19 42 42 H 1.08994 * 110.71067 * 336.69385 * 24 22 21 43 43 H 1.09003 * 110.70212 * 99.93482 * 24 22 21 44 44 H 1.09002 * 110.99418 * 277.56529 * 25 24 22 45 45 H 1.09005 * 111.02332 * 153.76201 * 25 24 22 46 46 H 1.08998 * 110.38147 * 204.09814 * 26 25 24 47 47 H 1.09002 * 110.46701 * 81.80304 * 26 25 24 48 48 H 1.00904 * 110.99397 * 240.67908 * 27 22 21 49 49 H 1.08001 * 120.05403 * 179.74854 * 28 13 12 50 50 H 1.08005 * 119.94497 * 180.23370 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2489 1.6178 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0086 -1.2013 -0.0005 8 1 3.0887 -1.2012 -0.0001 9 8 1.3348 -2.3685 -0.0005 10 6 2.0691 -3.5031 0.1057 11 6 3.4591 -3.4340 0.0893 12 6 4.2086 -4.5830 0.1963 13 6 3.5708 -5.8233 0.3212 14 6 4.3668 -7.0533 0.4352 15 6 4.0241 -7.9982 1.3368 16 6 3.0243 -7.7019 2.3624 17 8 2.5921 -6.5703 2.4821 18 7 2.5817 -8.6818 3.1749 19 6 1.5807 -8.3849 4.2026 20 6 1.2537 -9.6615 4.9800 21 6 0.2087 -9.3514 6.0537 22 6 -0.1187 -10.6281 6.8306 23 1 -0.4225 -11.4147 6.1399 24 6 -1.2479 -10.3503 7.8450 25 6 -0.8219 -11.1869 9.0800 26 6 0.7200 -11.0446 9.0377 27 7 1.0616 -11.0640 7.5994 28 6 2.1720 -5.8885 0.3315 29 6 1.4309 -4.7337 0.2293 30 1 -0.4851 0.8400 0.0004 31 1 3.9502 -2.4770 -0.0076 32 1 5.2871 -4.5284 0.1830 33 1 5.2260 -7.2015 -0.2022 34 1 4.4848 -8.9741 1.2979 35 1 2.9259 -9.5837 3.0793 36 1 1.9742 -7.6332 4.8869 37 1 0.6749 -8.0063 3.7289 38 1 0.8599 -10.4129 4.2955 39 1 2.1593 -10.0405 5.4536 40 1 0.6029 -8.6002 6.7380 41 1 -0.6970 -8.9722 5.5804 42 1 -1.2902 -9.2900 8.0938 43 1 -2.2069 -10.6951 7.4581 44 1 -1.1210 -12.2291 8.9678 45 1 -1.2280 -10.7631 9.9985 46 1 1.1927 -11.8817 9.5513 47 1 1.0282 -10.1011 9.4882 48 1 1.3614 -11.9834 7.3113 49 1 1.6758 -6.8433 0.4236 50 1 0.3520 -4.7827 0.2409 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493790800.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:45 Heat of formation + Delta-G solvation = -21.260006 kcal Electronic energy + Delta-G solvation = -28501.132319 eV Core-core repulsion = 24494.101025 eV Total energy + Delta-G solvation = -4007.031294 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -39.69348 -39.19300 -38.63301 -36.59922 -35.45637 -33.03162 -32.93665 -32.06809 -30.48754 -30.06664 -29.43048 -27.88924 -25.67431 -25.19492 -23.05664 -22.09933 -21.71508 -21.20122 -20.89683 -20.23397 -19.05525 -17.88032 -17.46269 -17.09335 -16.55862 -16.00275 -15.61215 -15.41996 -14.66846 -14.54332 -14.29897 -14.16977 -13.97907 -13.78241 -13.53489 -13.42698 -13.26712 -12.98111 -12.88227 -12.71151 -12.51268 -12.18820 -12.12494 -11.92068 -11.65620 -11.62766 -11.37495 -11.33232 -11.13094 -11.00101 -10.89219 -10.84851 -10.64096 -10.59801 -10.38017 -9.43232 -9.34580 -9.10931 -8.91161 -8.84938 -8.64538 -7.86611 -6.81036 -6.41670 -3.97431 1.31310 2.47673 2.75981 3.16197 3.19204 3.20380 3.43807 3.73223 3.74934 4.00704 4.23316 4.27329 4.58679 4.74508 4.74707 4.81923 4.94151 4.98632 5.11384 5.14952 5.21356 5.22523 5.28778 5.39013 5.40609 5.43148 5.48407 5.54235 5.61872 5.64819 5.67496 5.78522 5.80013 5.89677 5.90414 6.09136 6.13790 6.30130 6.39410 6.47797 6.49904 6.64734 6.66264 6.84373 6.97089 7.08867 7.16700 7.41406 7.50509 7.55109 7.77965 7.97466 8.05044 8.64745 9.03911 9.76398 10.76212 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012135 B = 0.001870 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.860513 B =14968.303256 C =16640.485333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.039 3.961 3 Si 0.942 3.058 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.390 4.390 8 H 0.093 0.907 9 O -0.173 6.173 10 C 0.171 3.829 11 C -0.251 4.251 12 C -0.042 4.042 13 C -0.188 4.188 14 C 0.025 3.975 15 C -0.266 4.266 16 C 0.536 3.464 17 O -0.512 6.512 18 N -0.737 5.737 19 C 0.120 3.880 20 C -0.123 4.123 21 C -0.101 4.101 22 C 0.078 3.922 23 H 0.061 0.939 24 C -0.138 4.138 25 C -0.156 4.156 26 C 0.047 3.953 27 N -0.680 5.680 28 C 0.013 3.987 29 C -0.203 4.203 30 H 0.271 0.729 31 H 0.126 0.874 32 H 0.106 0.894 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.394 0.606 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.074 0.926 46 H 0.065 0.935 47 H 0.077 0.923 48 H 0.337 0.663 49 H 0.101 0.899 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.987 -24.990 12.630 28.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.110 0.890 9 O -0.076 6.076 10 C 0.116 3.884 11 C -0.270 4.270 12 C -0.060 4.060 13 C -0.189 4.189 14 C 0.006 3.994 15 C -0.287 4.287 16 C 0.326 3.674 17 O -0.389 6.389 18 N -0.390 5.390 19 C -0.003 4.003 20 C -0.161 4.161 21 C -0.140 4.140 22 C -0.032 4.032 23 H 0.079 0.921 24 C -0.177 4.177 25 C -0.195 4.195 26 C -0.082 4.082 27 N -0.309 5.309 28 C -0.006 4.006 29 C -0.222 4.222 30 H 0.081 0.919 31 H 0.143 0.857 32 H 0.124 0.876 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.227 0.773 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.093 0.907 46 H 0.084 0.916 47 H 0.095 0.905 48 H 0.153 0.847 49 H 0.119 0.881 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.545 -23.273 12.694 26.632 hybrid contribution 0.108 -0.555 0.208 0.602 sum 2.653 -23.829 12.901 27.227 Atomic orbital electron populations 1.70010 1.06013 1.27812 1.45697 1.25318 0.95841 0.98885 0.96536 0.85771 0.78701 0.79692 0.79215 1.19464 1.20287 1.19466 1.21341 0.91883 0.80821 1.52540 0.88963 1.83903 1.34732 1.11630 1.77309 1.19523 0.90266 0.87729 0.90855 1.20947 0.93655 0.98768 1.13628 1.20741 0.97870 0.91570 0.95854 1.18296 0.93022 0.92263 1.15357 1.22324 0.93891 0.91421 0.91813 1.22620 1.05253 1.00877 0.99952 1.18500 0.81932 0.84896 0.82090 1.90997 1.57109 1.20516 1.70239 1.45986 1.44455 1.12175 1.36357 1.21286 0.91905 0.97281 0.89871 1.21705 1.00328 0.96929 0.97149 1.21516 0.98582 0.96956 0.96919 1.22197 0.88723 0.97394 0.94906 0.92085 1.22850 0.98428 1.01117 0.95278 1.23148 0.97262 1.00161 0.98908 1.22871 0.93677 1.02061 0.89589 1.61592 1.34150 1.31843 1.03282 1.20441 0.92116 0.96190 0.91844 1.20002 0.99284 0.90246 1.12679 0.91947 0.85676 0.87626 0.86133 0.86225 0.77276 0.91799 0.91870 0.92147 0.90565 0.91136 0.91597 0.90557 0.91011 0.91604 0.90730 0.91629 0.90459 0.84694 0.88116 0.86874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.84 13.67 55.48 0.76 -25.08 16 2 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 21.04 29.55 -169.99 -5.02 16.02 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 7 C -0.39 -11.28 9.48 30.91 0.29 -10.99 16 8 H 0.09 2.47 5.18 -52.48 -0.27 2.20 16 9 O -0.17 -5.19 9.74 0.76 0.01 -5.18 16 10 C 0.17 4.45 6.66 -38.88 -0.26 4.19 16 11 C -0.25 -5.86 9.14 -39.46 -0.36 -6.22 16 12 C -0.04 -0.84 9.78 -39.14 -0.38 -1.22 16 13 C -0.19 -3.60 4.53 -105.03 -0.48 -4.07 16 14 C 0.03 0.37 9.80 -37.20 -0.36 0.00 16 15 C -0.27 -3.49 9.90 -37.50 -0.37 -3.86 16 16 C 0.54 8.27 6.78 -13.04 -0.09 8.19 16 17 O -0.51 -10.43 12.18 5.17 0.06 -10.37 16 18 N -0.74 -8.53 5.55 -61.75 -0.34 -8.88 16 19 C 0.12 1.37 5.67 -4.04 -0.02 1.35 16 20 C -0.12 -0.99 5.23 -26.73 -0.14 -1.13 16 21 C -0.10 -0.80 4.76 -26.73 -0.13 -0.92 16 22 C 0.08 0.51 3.34 -66.72 -0.22 0.29 16 23 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 24 C -0.14 -0.86 6.47 -24.91 -0.16 -1.02 16 25 C -0.16 -0.84 7.08 -24.60 -0.17 -1.01 16 26 C 0.05 0.28 7.57 -2.30 -0.02 0.26 16 27 N -0.68 -4.49 6.57 -103.82 -0.68 -5.17 16 28 C 0.01 0.26 6.60 -39.14 -0.26 0.00 16 29 C -0.20 -4.78 9.97 -39.47 -0.39 -5.18 16 30 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.13 2.88 5.62 -52.49 -0.29 2.59 16 32 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 33 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 34 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 35 H 0.39 3.28 8.45 -40.82 -0.34 2.94 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.62 7.82 -51.93 -0.41 0.21 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.52 7.85 -51.93 -0.41 0.11 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.34 1.79 8.91 -39.29 -0.35 1.44 16 49 H 0.10 1.90 7.03 -52.49 -0.37 1.53 16 50 H 0.11 2.60 8.06 -52.48 -0.42 2.18 16 LS Contribution 407.82 15.07 6.15 6.15 Total: -1.00 -34.56 407.82 -10.62 -45.18 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -7.92 Total: 7.68 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: -3.62 Total: -20.35 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: -0.27 Total: -39.13 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: 0.07 Total: -15.55 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.56 -10.62 -45.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493790800.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.923 kcal (2) G-P(sol) polarization free energy of solvation -34.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds