Wall clock time and date at job start Wed Apr 1 2020 03:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31503 * 1 3 3 Si 1.86803 * 119.99657 * 2 1 4 4 H 1.48498 * 109.47209 * 240.00119 * 3 2 1 5 5 H 1.48497 * 109.47263 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47124 * 120.00312 * 3 2 1 7 7 C 1.38717 * 120.00075 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99700 * 180.02562 * 7 2 1 9 9 O 1.34776 * 120.00152 * 359.97438 * 7 2 1 10 10 C 1.35569 * 117.00002 * 185.07012 * 9 7 2 11 11 C 1.39181 * 119.89778 * 354.33258 * 10 9 7 12 12 C 1.37601 * 120.10030 * 180.02562 * 11 10 9 13 13 C 1.40027 * 119.90064 * 0.02562 * 12 11 10 14 14 C 1.46952 * 120.10291 * 179.97438 * 13 12 11 15 15 C 1.35026 * 120.00408 * 136.58979 * 14 13 12 16 16 C 1.46256 * 119.99588 * 348.68989 * 15 14 13 17 17 O 1.21722 * 120.00098 * 353.21014 * 16 15 14 18 18 N 1.34769 * 119.99982 * 173.21165 * 16 15 14 19 19 C 1.46498 * 120.00017 * 179.97438 * 18 16 15 20 20 C 1.53003 * 109.47255 * 179.97438 * 19 18 16 21 21 C 1.53002 * 109.47483 * 179.97438 * 20 19 18 22 22 C 1.53002 * 109.47304 * 179.97438 * 21 20 19 23 23 H 1.08996 * 109.87918 * 305.42776 * 22 21 20 24 24 C 1.54315 * 109.88559 * 184.22109 * 22 21 20 25 25 C 1.55138 * 103.01690 * 218.31200 * 24 22 21 26 26 C 1.54899 * 101.65669 * 35.65793 * 25 24 22 27 27 N 1.47447 * 109.88354 * 66.45643 * 22 21 20 28 28 C 1.40026 * 119.79634 * 0.24982 * 13 12 11 29 29 C 1.37605 * 119.89389 * 359.49147 * 28 13 12 30 30 H 0.96998 * 120.00615 * 359.97438 * 1 2 3 31 31 H 1.07998 * 119.94876 * 0.02562 * 11 10 9 32 32 H 1.08000 * 120.05110 * 179.97438 * 12 11 10 33 33 H 1.08005 * 119.99921 * 316.58894 * 14 13 12 34 34 H 1.07994 * 120.00436 * 168.40606 * 15 14 13 35 35 H 0.97007 * 120.00059 * 359.97438 * 18 16 15 36 36 H 1.09006 * 109.47455 * 299.99518 * 19 18 16 37 37 H 1.09003 * 109.47411 * 59.99808 * 19 18 16 38 38 H 1.08998 * 109.46988 * 299.99651 * 20 19 18 39 39 H 1.09003 * 109.46983 * 59.99650 * 20 19 18 40 40 H 1.08998 * 109.46913 * 299.99929 * 21 20 19 41 41 H 1.09003 * 109.47107 * 59.99959 * 21 20 19 42 42 H 1.08994 * 110.71067 * 336.69385 * 24 22 21 43 43 H 1.09003 * 110.70212 * 99.93482 * 24 22 21 44 44 H 1.09002 * 110.99418 * 277.56529 * 25 24 22 45 45 H 1.09005 * 111.02332 * 153.76201 * 25 24 22 46 46 H 1.08998 * 110.38147 * 204.09814 * 26 25 24 47 47 H 1.09002 * 110.46701 * 81.80304 * 26 25 24 48 48 H 1.00904 * 110.99397 * 240.67908 * 27 22 21 49 49 H 1.08001 * 120.05403 * 179.74854 * 28 13 12 50 50 H 1.08005 * 119.94497 * 180.23370 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2489 1.6178 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0086 -1.2013 -0.0005 8 1 3.0887 -1.2012 -0.0001 9 8 1.3348 -2.3685 -0.0005 10 6 2.0691 -3.5031 0.1057 11 6 3.4591 -3.4340 0.0893 12 6 4.2086 -4.5830 0.1963 13 6 3.5708 -5.8233 0.3212 14 6 4.3668 -7.0533 0.4352 15 6 4.0241 -7.9982 1.3368 16 6 3.0243 -7.7019 2.3624 17 8 2.5921 -6.5703 2.4821 18 7 2.5817 -8.6818 3.1749 19 6 1.5807 -8.3849 4.2026 20 6 1.2537 -9.6615 4.9800 21 6 0.2087 -9.3514 6.0537 22 6 -0.1187 -10.6281 6.8306 23 1 -0.4225 -11.4147 6.1399 24 6 -1.2479 -10.3503 7.8450 25 6 -0.8219 -11.1869 9.0800 26 6 0.7200 -11.0446 9.0377 27 7 1.0616 -11.0640 7.5994 28 6 2.1720 -5.8885 0.3315 29 6 1.4309 -4.7337 0.2293 30 1 -0.4851 0.8400 0.0004 31 1 3.9502 -2.4770 -0.0076 32 1 5.2871 -4.5284 0.1830 33 1 5.2260 -7.2015 -0.2022 34 1 4.4848 -8.9741 1.2979 35 1 2.9259 -9.5837 3.0793 36 1 1.9742 -7.6332 4.8869 37 1 0.6749 -8.0063 3.7289 38 1 0.8599 -10.4129 4.2955 39 1 2.1593 -10.0405 5.4536 40 1 0.6029 -8.6002 6.7380 41 1 -0.6970 -8.9722 5.5804 42 1 -1.2902 -9.2900 8.0938 43 1 -2.2069 -10.6951 7.4581 44 1 -1.1210 -12.2291 8.9678 45 1 -1.2280 -10.7631 9.9985 46 1 1.1927 -11.8817 9.5513 47 1 1.0282 -10.1011 9.4882 48 1 1.3614 -11.9834 7.3113 49 1 1.6758 -6.8433 0.4236 50 1 0.3520 -4.7827 0.2409 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493790800.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:43 Heat of formation + Delta-G solvation = -45.504502 kcal Electronic energy + Delta-G solvation = -28502.183639 eV Core-core repulsion = 24494.101025 eV Total energy + Delta-G solvation = -4008.082614 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.08592 -40.38074 -39.70580 -38.25127 -36.54821 -34.58282 -34.01977 -33.73623 -31.81606 -30.97271 -30.34687 -29.28270 -27.44642 -26.31527 -24.25699 -23.48393 -22.94596 -22.31148 -21.80243 -20.88306 -20.34687 -19.73417 -18.84604 -18.04000 -17.93874 -16.96156 -16.60016 -16.38057 -16.30408 -16.10850 -15.68218 -15.61089 -15.38939 -14.92158 -14.59202 -14.55334 -14.44881 -14.29433 -14.00944 -13.84586 -13.68407 -13.55338 -13.43610 -13.03232 -12.88852 -12.61443 -12.57193 -12.36480 -12.22956 -12.17561 -12.12753 -11.95274 -11.67118 -11.56909 -11.53150 -11.23819 -10.94085 -10.64310 -10.37732 -9.99823 -9.55716 -9.40816 -8.54781 -8.47948 -6.15466 0.01068 0.71998 1.13857 1.33177 1.47016 1.50537 2.17457 2.41605 2.51813 2.87358 3.20992 3.27035 3.52943 3.69054 3.78223 4.00129 4.06810 4.10282 4.12544 4.13422 4.17163 4.21325 4.37049 4.40061 4.55038 4.60566 4.62586 4.63627 4.73061 4.77670 4.82227 4.92148 4.95993 5.00700 5.04525 5.06438 5.10190 5.12498 5.26566 5.28029 5.28415 5.39473 5.42858 5.48163 5.60492 5.68689 5.72894 5.86205 5.97672 6.02525 6.25750 6.56390 6.77124 6.95498 7.49684 7.77798 8.74962 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012135 B = 0.001870 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.860513 B =14968.303256 C =16640.485333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.025 4.025 3 Si 1.022 2.978 4 H -0.253 1.253 5 H -0.270 1.270 6 H -0.259 1.259 7 C -0.416 4.416 8 H 0.102 0.898 9 O -0.231 6.231 10 C 0.126 3.874 11 C -0.259 4.259 12 C -0.048 4.048 13 C -0.161 4.161 14 C 0.003 3.997 15 C -0.229 4.229 16 C 0.521 3.479 17 O -0.572 6.572 18 N -0.715 5.715 19 C 0.121 3.879 20 C -0.106 4.106 21 C -0.101 4.101 22 C 0.081 3.919 23 H 0.073 0.927 24 C -0.142 4.142 25 C -0.151 4.151 26 C 0.046 3.954 27 N -0.690 5.690 28 C 0.014 3.986 29 C -0.222 4.222 30 H 0.273 0.727 31 H 0.121 0.879 32 H 0.149 0.851 33 H 0.170 0.830 34 H 0.176 0.824 35 H 0.416 0.584 36 H 0.040 0.960 37 H 0.044 0.956 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.051 0.949 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.063 0.937 48 H 0.347 0.653 49 H 0.119 0.881 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.347 -29.028 13.047 32.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.222 4.222 3 Si 0.841 3.159 4 H -0.178 1.178 5 H -0.194 1.194 6 H -0.183 1.183 7 C -0.492 4.492 8 H 0.120 0.880 9 O -0.138 6.138 10 C 0.075 3.925 11 C -0.278 4.278 12 C -0.066 4.066 13 C -0.161 4.161 14 C -0.016 4.016 15 C -0.250 4.250 16 C 0.312 3.688 17 O -0.453 6.453 18 N -0.368 5.368 19 C -0.003 4.003 20 C -0.143 4.143 21 C -0.140 4.140 22 C -0.029 4.029 23 H 0.091 0.909 24 C -0.181 4.181 25 C -0.190 4.190 26 C -0.083 4.083 27 N -0.320 5.320 28 C -0.004 4.004 29 C -0.242 4.242 30 H 0.082 0.918 31 H 0.138 0.862 32 H 0.166 0.834 33 H 0.187 0.813 34 H 0.193 0.807 35 H 0.253 0.747 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.097 0.903 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.098 0.902 47 H 0.082 0.918 48 H 0.164 0.836 49 H 0.136 0.864 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.948 -27.442 13.125 30.996 hybrid contribution -0.823 0.161 0.239 0.872 sum 5.126 -27.281 13.364 30.808 Atomic orbital electron populations 1.70169 1.08148 1.28952 1.48630 1.26692 0.96919 1.02897 0.95725 0.84609 0.77381 0.73934 0.80001 1.17757 1.19409 1.18338 1.21851 0.92616 0.81399 1.53345 0.88028 1.83871 1.36289 1.12736 1.80869 1.20008 0.91754 0.87528 0.93187 1.21098 0.92773 1.00155 1.13804 1.21193 0.99847 0.90600 0.94969 1.18898 0.92783 0.94330 1.10111 1.22583 0.95377 0.89246 0.94415 1.23087 1.02307 1.02335 0.97242 1.19192 0.82172 0.84569 0.82910 1.91005 1.59319 1.23084 1.71868 1.45845 1.43315 1.12637 1.34979 1.21273 0.90889 0.98624 0.89542 1.21576 1.00609 0.95252 0.96892 1.21506 0.98322 0.97441 0.96753 1.22132 0.88899 0.96789 0.95055 0.90863 1.22870 0.98760 1.00627 0.95817 1.23125 0.96830 1.00481 0.98549 1.22868 0.94160 1.01981 0.89334 1.61521 1.34190 1.32625 1.03622 1.20672 0.93242 0.95571 0.90953 1.20184 0.99223 0.91011 1.13741 0.91761 0.86170 0.83360 0.81258 0.80690 0.74723 0.94108 0.93802 0.90294 0.89918 0.93002 0.91999 0.91814 0.90349 0.90673 0.90472 0.90200 0.91809 0.83624 0.86357 0.88157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -59.15 13.67 21.62 0.30 -58.85 16 2 C -0.03 -1.49 5.49 84.86 0.47 -1.03 16 3 Si 1.02 44.83 29.55 68.60 2.03 46.85 16 4 H -0.25 -10.31 7.11 99.48 0.71 -9.61 16 5 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 6 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 7 C -0.42 -25.79 9.48 67.93 0.64 -25.15 16 8 H 0.10 5.78 5.18 -2.91 -0.02 5.76 16 9 O -0.23 -15.10 9.74 -20.20 -0.20 -15.30 16 10 C 0.13 7.03 6.66 22.72 0.15 7.18 16 11 C -0.26 -12.50 9.14 22.35 0.20 -12.30 16 12 C -0.05 -1.85 9.78 22.55 0.22 -1.63 16 13 C -0.16 -5.74 4.53 -20.13 -0.09 -5.83 16 14 C 0.00 0.07 9.80 23.82 0.23 0.31 16 15 C -0.23 -4.63 9.90 23.62 0.23 -4.40 16 16 C 0.52 14.46 6.78 86.33 0.58 15.04 16 17 O -0.57 -22.89 12.18 -4.42 -0.05 -22.95 16 18 N -0.72 -14.28 5.55 -467.50 -2.59 -16.88 16 19 C 0.12 2.65 5.67 86.38 0.49 3.14 16 20 C -0.11 -1.47 5.23 30.60 0.16 -1.31 16 21 C -0.10 -1.53 4.76 30.60 0.15 -1.39 16 22 C 0.08 0.94 3.34 45.26 0.15 1.10 16 23 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 24 C -0.14 -1.64 6.47 31.77 0.21 -1.43 16 25 C -0.15 -1.40 7.08 31.98 0.23 -1.18 16 26 C 0.05 0.47 7.57 86.77 0.66 1.13 16 27 N -0.69 -7.78 6.57 -482.37 -3.17 -10.95 16 28 C 0.01 0.57 6.60 22.55 0.15 0.72 16 29 C -0.22 -11.16 9.97 22.34 0.22 -10.94 16 30 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 31 H 0.12 5.78 5.62 -2.91 -0.02 5.76 16 32 H 0.15 4.38 8.06 -2.91 -0.02 4.35 16 33 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 34 H 0.18 1.74 8.06 -2.91 -0.02 1.71 16 35 H 0.42 4.84 8.45 -92.70 -0.78 4.06 16 36 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 37 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.08 1.10 7.82 -2.39 -0.02 1.08 16 40 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.06 0.88 7.85 -2.39 -0.02 0.86 16 43 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 46 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.35 2.75 8.91 -89.69 -0.80 1.95 16 49 H 0.12 4.35 7.03 -2.91 -0.02 4.33 16 50 H 0.10 5.09 8.06 -2.91 -0.02 5.06 16 Total: -1.00 -85.32 407.82 0.74 -84.59 By element: Atomic # 1 Polarization: 32.08 SS G_CDS: -0.63 Total: 31.45 kcal Atomic # 6 Polarization: -43.03 SS G_CDS: 5.06 Total: -37.97 kcal Atomic # 7 Polarization: -81.21 SS G_CDS: -5.47 Total: -86.68 kcal Atomic # 8 Polarization: -37.99 SS G_CDS: -0.25 Total: -38.24 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -85.32 0.74 -84.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493790800.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.082 kcal (2) G-P(sol) polarization free energy of solvation -85.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds