Wall clock time and date at job start Wed Apr 1 2020 03:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86794 * 119.99941 * 2 1 4 4 H 1.48496 * 109.47519 * 269.99536 * 3 2 1 5 5 H 1.48499 * 109.47292 * 30.00397 * 3 2 1 6 6 H 1.48508 * 109.46892 * 149.99990 * 3 2 1 7 7 C 1.38723 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99959 * 180.02562 * 7 2 1 9 9 O 1.34778 * 119.99870 * 359.97438 * 7 2 1 10 10 C 1.35570 * 117.00046 * 185.06295 * 9 7 2 11 11 C 1.39175 * 119.90205 * 354.36161 * 10 9 7 12 12 C 1.37597 * 120.10805 * 180.02562 * 11 10 9 13 13 C 1.40020 * 119.89466 * 0.02562 * 12 11 10 14 14 C 1.46966 * 120.10157 * 179.97438 * 13 12 11 15 15 C 1.35015 * 119.99882 * 136.67710 * 14 13 12 16 16 C 1.46260 * 120.00270 * 348.68983 * 15 14 13 17 17 O 1.21718 * 119.99644 * 353.21060 * 16 15 14 18 18 N 1.34784 * 119.99712 * 173.21146 * 16 15 14 19 19 C 1.46495 * 119.99498 * 180.02562 * 18 16 15 20 20 C 1.53000 * 109.46885 * 179.97438 * 19 18 16 21 21 C 1.53002 * 109.46954 * 179.97438 * 20 19 18 22 22 C 1.53002 * 109.47208 * 180.02562 * 21 20 19 23 23 H 1.09000 * 110.33311 * 52.74113 * 22 21 20 24 24 C 1.54904 * 110.37562 * 174.99908 * 22 21 20 25 25 C 1.55143 * 101.68611 * 155.87785 * 24 22 21 26 26 C 1.54368 * 102.99834 * 324.39815 * 25 24 22 27 27 N 1.47437 * 107.25029 * 22.22822 * 26 25 24 28 28 C 1.40027 * 119.79939 * 0.25055 * 13 12 11 29 29 C 1.37600 * 119.89661 * 359.49061 * 28 13 12 30 30 H 0.96994 * 120.00341 * 0.02562 * 1 2 3 31 31 H 1.08004 * 119.94269 * 0.02562 * 11 10 9 32 32 H 1.07994 * 120.05107 * 179.97438 * 12 11 10 33 33 H 1.07997 * 119.99591 * 316.68294 * 14 13 12 34 34 H 1.08003 * 119.99921 * 168.68694 * 15 14 13 35 35 H 0.97002 * 119.99943 * 359.97438 * 18 16 15 36 36 H 1.08999 * 109.47420 * 60.00197 * 19 18 16 37 37 H 1.08999 * 109.47369 * 299.99994 * 19 18 16 38 38 H 1.09002 * 109.46847 * 60.00517 * 20 19 18 39 39 H 1.08998 * 109.46982 * 299.99798 * 20 19 18 40 40 H 1.08999 * 109.47300 * 60.00429 * 21 20 19 41 41 H 1.08998 * 109.47196 * 299.99771 * 21 20 19 42 42 H 1.08998 * 110.99343 * 273.98896 * 24 22 21 43 43 H 1.09001 * 110.98891 * 37.77241 * 24 22 21 44 44 H 1.09007 * 110.70488 * 82.74914 * 25 24 22 45 45 H 1.08996 * 110.70666 * 205.98270 * 25 24 22 46 46 H 1.09002 * 109.84756 * 262.83129 * 26 25 24 47 47 H 1.09004 * 110.04110 * 141.73345 * 26 25 24 48 48 H 1.00898 * 111.00012 * 123.29684 * 27 26 25 49 49 H 1.07999 * 120.04859 * 179.74206 * 28 13 12 50 50 H 1.07999 * 119.94756 * 180.23093 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4401 0.7001 7 6 2.0087 -1.2014 -0.0005 8 1 3.0887 -1.2013 -0.0001 9 8 1.3348 -2.3686 -0.0005 10 6 2.0691 -3.5032 0.1055 11 6 3.4590 -3.4342 0.0896 12 6 4.2084 -4.5832 0.1964 13 6 3.5705 -5.8234 0.3208 14 6 4.3665 -7.0536 0.4346 15 6 4.0224 -7.9995 1.3345 16 6 3.0210 -7.7045 2.3589 17 8 2.5885 -6.5731 2.4791 18 7 2.5771 -8.6855 3.1696 19 6 1.5736 -8.3901 4.1952 20 6 1.2457 -9.6676 4.9707 21 6 0.1981 -9.3590 6.0423 22 6 -0.1293 -10.6364 6.8182 23 1 0.7849 -11.0973 7.1920 24 6 -1.0936 -10.3236 7.9895 25 6 -1.7712 -11.7010 8.2150 26 6 -1.8823 -12.2715 6.7850 27 7 -0.8723 -11.5837 5.9601 28 6 2.1718 -5.8887 0.3305 29 6 1.4306 -4.7338 0.2285 30 1 -0.4850 0.8400 -0.0004 31 1 3.9501 -2.4771 -0.0068 32 1 5.2869 -4.5286 0.1835 33 1 5.2267 -7.2009 -0.2015 34 1 4.4866 -8.9739 1.2980 35 1 2.9216 -9.5872 3.0734 36 1 0.6687 -8.0118 3.7198 37 1 1.9652 -7.6388 4.8809 38 1 2.1505 -10.0464 5.4461 39 1 0.8540 -10.4186 4.2847 40 1 -0.7067 -8.9800 5.5673 41 1 0.5903 -8.6082 6.7282 42 1 -0.5424 -10.0098 8.8759 43 1 -1.8268 -9.5704 7.7011 44 1 -1.1456 -12.3409 8.8374 45 1 -2.7588 -11.5765 8.6589 46 1 -2.8789 -12.0807 6.3868 47 1 -1.6860 -13.3437 6.7943 48 1 -0.2468 -12.2464 5.5270 49 1 1.6756 -6.8435 0.4220 50 1 0.3518 -4.7829 0.2397 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493790802.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:49 Heat of formation + Delta-G solvation = -21.595483 kcal Electronic energy + Delta-G solvation = -28481.512440 eV Core-core repulsion = 24474.466599 eV Total energy + Delta-G solvation = -4007.045841 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -39.70707 -39.12850 -38.63671 -36.61200 -35.49947 -33.07537 -32.96203 -32.07354 -30.59265 -30.06977 -29.45547 -27.89422 -25.66353 -25.18684 -23.03196 -22.04147 -21.71931 -21.20796 -20.91902 -20.34242 -19.07616 -17.88421 -17.36965 -17.09122 -16.57399 -16.13570 -15.69635 -15.37202 -14.71257 -14.55736 -14.41136 -14.15600 -13.88291 -13.69493 -13.54116 -13.41963 -13.14787 -13.04459 -12.89404 -12.69570 -12.51688 -12.31589 -12.13431 -12.04741 -11.66188 -11.65631 -11.48975 -11.32572 -11.10915 -11.01084 -10.92135 -10.87410 -10.64021 -10.57615 -10.37831 -9.44086 -9.35969 -9.11152 -8.87603 -8.84257 -8.65417 -7.86948 -6.81510 -6.42057 -3.97728 1.30165 2.47345 2.75346 3.16010 3.17610 3.21826 3.40869 3.71494 3.75872 4.00334 4.21010 4.29481 4.57469 4.67192 4.74233 4.76159 4.89684 4.96444 5.10875 5.15070 5.21429 5.22698 5.27589 5.36930 5.40014 5.40329 5.47403 5.54009 5.57961 5.63645 5.65844 5.78010 5.79761 5.89609 5.90281 6.02690 6.09095 6.29864 6.38575 6.48751 6.50132 6.62414 6.65428 6.84056 6.95946 7.08532 7.16678 7.41225 7.50096 7.54900 7.75423 7.97155 8.04804 8.62667 9.03607 9.76181 10.75896 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012201 B = 0.001867 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.259865 B =14994.522120 C =16682.677309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.038 3.962 3 Si 0.942 3.058 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.389 4.389 8 H 0.094 0.906 9 O -0.173 6.173 10 C 0.171 3.829 11 C -0.251 4.251 12 C -0.042 4.042 13 C -0.189 4.189 14 C 0.026 3.974 15 C -0.267 4.267 16 C 0.536 3.464 17 O -0.512 6.512 18 N -0.738 5.738 19 C 0.121 3.879 20 C -0.126 4.126 21 C -0.103 4.103 22 C 0.077 3.923 23 H 0.051 0.949 24 C -0.127 4.127 25 C -0.145 4.145 26 C 0.046 3.954 27 N -0.680 5.680 28 C 0.013 3.987 29 C -0.203 4.203 30 H 0.270 0.730 31 H 0.126 0.874 32 H 0.106 0.894 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.394 0.606 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.049 0.951 48 H 0.338 0.662 49 H 0.101 0.899 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.276 -25.081 12.324 28.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.466 4.466 8 H 0.111 0.889 9 O -0.076 6.076 10 C 0.116 3.884 11 C -0.270 4.270 12 C -0.060 4.060 13 C -0.190 4.190 14 C 0.006 3.994 15 C -0.288 4.288 16 C 0.326 3.674 17 O -0.388 6.388 18 N -0.391 5.391 19 C -0.003 4.003 20 C -0.164 4.164 21 C -0.141 4.141 22 C -0.033 4.033 23 H 0.069 0.931 24 C -0.165 4.165 25 C -0.183 4.183 26 C -0.083 4.083 27 N -0.310 5.310 28 C -0.006 4.006 29 C -0.222 4.222 30 H 0.080 0.920 31 H 0.143 0.857 32 H 0.124 0.876 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.227 0.773 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.097 0.903 44 H 0.084 0.916 45 H 0.093 0.907 46 H 0.093 0.907 47 H 0.068 0.932 48 H 0.154 0.846 49 H 0.119 0.881 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.046 -23.523 12.132 26.546 hybrid contribution 1.277 -0.435 0.634 1.491 sum 3.324 -23.958 12.766 27.350 Atomic orbital electron populations 1.70021 1.06014 1.27708 1.45734 1.25323 0.95845 0.98896 0.96551 0.85698 0.78962 0.80009 0.78689 1.19859 1.20256 1.19153 1.21391 0.91908 0.80810 1.52447 0.88909 1.83906 1.34743 1.11638 1.77283 1.19526 0.90262 0.87730 0.90837 1.20946 0.93657 0.98767 1.13646 1.20735 0.97858 0.91571 0.95866 1.18297 0.93027 0.92248 1.15438 1.22326 0.93884 0.91399 0.91759 1.22609 1.05231 1.00894 1.00053 1.18503 0.81947 0.84881 0.82056 1.90998 1.57139 1.20546 1.70095 1.45989 1.44315 1.12154 1.36596 1.21270 0.92038 0.96999 0.89988 1.21747 0.98939 0.97635 0.98089 1.21480 0.99357 0.96157 0.97119 1.22411 0.95228 0.93675 0.91975 0.93097 1.22760 0.98646 0.97394 0.97738 1.22805 1.01476 0.96873 0.97155 1.22593 0.97379 0.96484 0.91819 1.61759 1.17374 1.20173 1.31666 1.20445 0.92106 0.96216 0.91800 1.20009 0.99314 0.90235 1.12630 0.91990 0.85676 0.87639 0.86133 0.86240 0.77300 0.91527 0.91890 0.92071 0.90943 0.90570 0.91397 0.90834 0.90328 0.91644 0.90723 0.90740 0.93217 0.84618 0.88087 0.86842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.82 13.67 55.48 0.76 -25.06 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 21.02 29.55 -169.99 -5.02 16.00 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.39 -11.26 9.48 30.91 0.29 -10.97 16 8 H 0.09 2.49 5.18 -52.49 -0.27 2.22 16 9 O -0.17 -5.18 9.74 0.75 0.01 -5.17 16 10 C 0.17 4.45 6.66 -38.88 -0.26 4.19 16 11 C -0.25 -5.85 9.14 -39.47 -0.36 -6.21 16 12 C -0.04 -0.84 9.78 -39.15 -0.38 -1.22 16 13 C -0.19 -3.60 4.54 -105.02 -0.48 -4.07 16 14 C 0.03 0.37 9.80 -37.19 -0.36 0.01 16 15 C -0.27 -3.46 9.90 -37.51 -0.37 -3.83 16 16 C 0.54 8.17 6.77 -13.03 -0.09 8.08 16 17 O -0.51 -10.32 12.18 5.17 0.06 -10.26 16 18 N -0.74 -8.34 5.55 -61.76 -0.34 -8.68 16 19 C 0.12 1.34 5.67 -4.04 -0.02 1.32 16 20 C -0.13 -0.96 5.26 -26.73 -0.14 -1.10 16 21 C -0.10 -0.79 4.92 -26.73 -0.13 -0.92 16 22 C 0.08 0.52 3.23 -66.19 -0.21 0.30 16 23 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 24 C -0.13 -0.81 6.49 -24.59 -0.16 -0.97 16 25 C -0.14 -0.81 6.95 -24.88 -0.17 -0.98 16 26 C 0.05 0.28 7.58 -2.81 -0.02 0.26 16 27 N -0.68 -4.75 6.76 -103.82 -0.70 -5.45 16 28 C 0.01 0.27 6.60 -39.14 -0.26 0.01 16 29 C -0.20 -4.78 9.97 -39.46 -0.39 -5.17 16 30 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.13 2.88 5.62 -52.48 -0.29 2.58 16 32 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 33 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 34 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 35 H 0.39 3.15 8.45 -40.82 -0.34 2.81 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.54 7.95 -51.93 -0.41 0.13 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.08 0.56 8.06 -51.93 -0.42 0.14 16 44 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 48 H 0.34 1.95 8.91 -39.29 -0.35 1.60 16 49 H 0.10 1.91 7.02 -52.49 -0.37 1.54 16 50 H 0.11 2.61 8.06 -52.49 -0.42 2.19 16 LS Contribution 408.32 15.07 6.15 6.15 Total: -1.00 -34.59 408.32 -10.65 -45.24 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -7.94 Total: 7.52 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: -3.62 Total: -20.29 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: -0.29 Total: -39.19 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: 0.07 Total: -15.43 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.59 -10.65 -45.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493790802.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.645 kcal (2) G-P(sol) polarization free energy of solvation -34.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds