Wall clock time and date at job start Wed Apr 1 2020 03:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86794 * 119.99941 * 2 1 4 4 H 1.48496 * 109.47519 * 269.99536 * 3 2 1 5 5 H 1.48499 * 109.47292 * 30.00397 * 3 2 1 6 6 H 1.48508 * 109.46892 * 149.99990 * 3 2 1 7 7 C 1.38723 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99959 * 180.02562 * 7 2 1 9 9 O 1.34778 * 119.99870 * 359.97438 * 7 2 1 10 10 C 1.35570 * 117.00046 * 185.06295 * 9 7 2 11 11 C 1.39175 * 119.90205 * 354.36161 * 10 9 7 12 12 C 1.37597 * 120.10805 * 180.02562 * 11 10 9 13 13 C 1.40020 * 119.89466 * 0.02562 * 12 11 10 14 14 C 1.46966 * 120.10157 * 179.97438 * 13 12 11 15 15 C 1.35015 * 119.99882 * 136.67710 * 14 13 12 16 16 C 1.46260 * 120.00270 * 348.68983 * 15 14 13 17 17 O 1.21718 * 119.99644 * 353.21060 * 16 15 14 18 18 N 1.34784 * 119.99712 * 173.21146 * 16 15 14 19 19 C 1.46495 * 119.99498 * 180.02562 * 18 16 15 20 20 C 1.53000 * 109.46885 * 179.97438 * 19 18 16 21 21 C 1.53002 * 109.46954 * 179.97438 * 20 19 18 22 22 C 1.53002 * 109.47208 * 180.02562 * 21 20 19 23 23 H 1.09000 * 110.33311 * 52.74113 * 22 21 20 24 24 C 1.54904 * 110.37562 * 174.99908 * 22 21 20 25 25 C 1.55143 * 101.68611 * 155.87785 * 24 22 21 26 26 C 1.54368 * 102.99834 * 324.39815 * 25 24 22 27 27 N 1.47437 * 107.25029 * 22.22822 * 26 25 24 28 28 C 1.40027 * 119.79939 * 0.25055 * 13 12 11 29 29 C 1.37600 * 119.89661 * 359.49061 * 28 13 12 30 30 H 0.96994 * 120.00341 * 0.02562 * 1 2 3 31 31 H 1.08004 * 119.94269 * 0.02562 * 11 10 9 32 32 H 1.07994 * 120.05107 * 179.97438 * 12 11 10 33 33 H 1.07997 * 119.99591 * 316.68294 * 14 13 12 34 34 H 1.08003 * 119.99921 * 168.68694 * 15 14 13 35 35 H 0.97002 * 119.99943 * 359.97438 * 18 16 15 36 36 H 1.08999 * 109.47420 * 60.00197 * 19 18 16 37 37 H 1.08999 * 109.47369 * 299.99994 * 19 18 16 38 38 H 1.09002 * 109.46847 * 60.00517 * 20 19 18 39 39 H 1.08998 * 109.46982 * 299.99798 * 20 19 18 40 40 H 1.08999 * 109.47300 * 60.00429 * 21 20 19 41 41 H 1.08998 * 109.47196 * 299.99771 * 21 20 19 42 42 H 1.08998 * 110.99343 * 273.98896 * 24 22 21 43 43 H 1.09001 * 110.98891 * 37.77241 * 24 22 21 44 44 H 1.09007 * 110.70488 * 82.74914 * 25 24 22 45 45 H 1.08996 * 110.70666 * 205.98270 * 25 24 22 46 46 H 1.09002 * 109.84756 * 262.83129 * 26 25 24 47 47 H 1.09004 * 110.04110 * 141.73345 * 26 25 24 48 48 H 1.00898 * 111.00012 * 123.29684 * 27 26 25 49 49 H 1.07999 * 120.04859 * 179.74206 * 28 13 12 50 50 H 1.07999 * 119.94756 * 180.23093 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4401 0.7001 7 6 2.0087 -1.2014 -0.0005 8 1 3.0887 -1.2013 -0.0001 9 8 1.3348 -2.3686 -0.0005 10 6 2.0691 -3.5032 0.1055 11 6 3.4590 -3.4342 0.0896 12 6 4.2084 -4.5832 0.1964 13 6 3.5705 -5.8234 0.3208 14 6 4.3665 -7.0536 0.4346 15 6 4.0224 -7.9995 1.3345 16 6 3.0210 -7.7045 2.3589 17 8 2.5885 -6.5731 2.4791 18 7 2.5771 -8.6855 3.1696 19 6 1.5736 -8.3901 4.1952 20 6 1.2457 -9.6676 4.9707 21 6 0.1981 -9.3590 6.0423 22 6 -0.1293 -10.6364 6.8182 23 1 0.7849 -11.0973 7.1920 24 6 -1.0936 -10.3236 7.9895 25 6 -1.7712 -11.7010 8.2150 26 6 -1.8823 -12.2715 6.7850 27 7 -0.8723 -11.5837 5.9601 28 6 2.1718 -5.8887 0.3305 29 6 1.4306 -4.7338 0.2285 30 1 -0.4850 0.8400 -0.0004 31 1 3.9501 -2.4771 -0.0068 32 1 5.2869 -4.5286 0.1835 33 1 5.2267 -7.2009 -0.2015 34 1 4.4866 -8.9739 1.2980 35 1 2.9216 -9.5872 3.0734 36 1 0.6687 -8.0118 3.7198 37 1 1.9652 -7.6388 4.8809 38 1 2.1505 -10.0464 5.4461 39 1 0.8540 -10.4186 4.2847 40 1 -0.7067 -8.9800 5.5673 41 1 0.5903 -8.6082 6.7282 42 1 -0.5424 -10.0098 8.8759 43 1 -1.8268 -9.5704 7.7011 44 1 -1.1456 -12.3409 8.8374 45 1 -2.7588 -11.5765 8.6589 46 1 -2.8789 -12.0807 6.3868 47 1 -1.6860 -13.3437 6.7943 48 1 -0.2468 -12.2464 5.5270 49 1 1.6756 -6.8435 0.4220 50 1 0.3518 -4.7829 0.2397 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493790802.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:47 Heat of formation + Delta-G solvation = -45.999278 kcal Electronic energy + Delta-G solvation = -28482.570668 eV Core-core repulsion = 24474.466599 eV Total energy + Delta-G solvation = -4008.104069 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.08892 -40.38139 -39.64377 -38.25318 -36.57121 -34.58378 -34.04113 -33.76470 -31.81727 -31.09441 -30.36561 -29.28693 -27.44741 -26.28786 -24.23959 -23.48030 -22.88630 -22.31985 -21.76656 -21.00226 -20.35977 -19.73618 -18.85097 -18.03590 -17.84682 -17.01916 -16.67161 -16.36537 -16.25664 -16.20763 -15.64887 -15.62706 -15.43022 -14.97043 -14.60134 -14.55887 -14.42404 -14.19020 -13.97475 -13.78115 -13.66660 -13.54696 -13.41705 -13.04524 -12.97322 -12.72025 -12.63500 -12.34817 -12.22535 -12.20279 -12.12099 -12.09198 -11.60388 -11.57641 -11.55507 -11.23751 -10.94512 -10.64272 -10.38055 -10.00196 -9.55828 -9.34630 -8.54886 -8.48071 -6.15596 0.00953 0.71893 1.13696 1.33294 1.45616 1.52182 2.17309 2.41115 2.51403 2.87311 3.21020 3.26062 3.52777 3.67252 3.79850 3.98224 4.04596 4.08973 4.09383 4.12633 4.16843 4.19298 4.30495 4.41240 4.54885 4.59634 4.62289 4.64442 4.71682 4.77635 4.81479 4.88360 4.96452 4.99404 5.02960 5.06434 5.10282 5.15263 5.26604 5.28034 5.28891 5.35176 5.41358 5.47969 5.59546 5.68620 5.72855 5.86176 5.99728 6.02614 6.25687 6.52851 6.76701 6.95441 7.49460 7.77887 8.75070 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012201 B = 0.001867 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.259865 B =14994.522120 C =16682.677309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.026 4.026 3 Si 1.023 2.977 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.253 1.253 7 C -0.416 4.416 8 H 0.103 0.897 9 O -0.232 6.232 10 C 0.126 3.874 11 C -0.259 4.259 12 C -0.048 4.048 13 C -0.160 4.160 14 C 0.003 3.997 15 C -0.229 4.229 16 C 0.521 3.479 17 O -0.571 6.571 18 N -0.715 5.715 19 C 0.121 3.879 20 C -0.109 4.109 21 C -0.102 4.102 22 C 0.080 3.920 23 H 0.064 0.936 24 C -0.132 4.132 25 C -0.141 4.141 26 C 0.044 3.956 27 N -0.694 5.694 28 C 0.014 3.986 29 C -0.222 4.222 30 H 0.273 0.727 31 H 0.121 0.879 32 H 0.149 0.851 33 H 0.170 0.830 34 H 0.176 0.824 35 H 0.416 0.584 36 H 0.040 0.960 37 H 0.046 0.954 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.054 0.946 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.063 0.937 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.346 0.654 49 H 0.118 0.882 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.159 -28.984 13.103 32.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.223 4.223 3 Si 0.842 3.158 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.177 1.177 7 C -0.491 4.491 8 H 0.120 0.880 9 O -0.138 6.138 10 C 0.075 3.925 11 C -0.278 4.278 12 C -0.066 4.066 13 C -0.161 4.161 14 C -0.016 4.016 15 C -0.250 4.250 16 C 0.312 3.688 17 O -0.452 6.452 18 N -0.368 5.368 19 C -0.003 4.003 20 C -0.147 4.147 21 C -0.141 4.141 22 C -0.029 4.029 23 H 0.082 0.918 24 C -0.170 4.170 25 C -0.180 4.180 26 C -0.085 4.085 27 N -0.325 5.325 28 C -0.004 4.004 29 C -0.242 4.242 30 H 0.082 0.918 31 H 0.138 0.862 32 H 0.167 0.833 33 H 0.187 0.813 34 H 0.193 0.807 35 H 0.253 0.747 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.100 0.900 43 H 0.082 0.918 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.163 0.837 49 H 0.135 0.865 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.969 -27.557 12.922 31.016 hybrid contribution 0.164 0.229 0.538 0.607 sum 6.133 -27.328 13.460 31.074 Atomic orbital electron populations 1.70177 1.08169 1.28886 1.48695 1.26701 0.96919 1.02918 0.95741 0.84536 0.77709 0.74168 0.79430 1.18394 1.19500 1.17690 1.21895 0.92623 0.81381 1.53245 0.87990 1.83874 1.36311 1.12750 1.80863 1.20005 0.91765 0.87503 0.93180 1.21094 0.92742 1.00164 1.13798 1.21190 0.99854 0.90570 0.94945 1.18898 0.92735 0.94354 1.10130 1.22583 0.95397 0.89228 0.94416 1.23085 1.02258 1.02326 0.97309 1.19193 0.82196 0.84572 0.82877 1.91006 1.59352 1.23138 1.71722 1.45841 1.43134 1.12609 1.35232 1.21258 0.90785 0.98553 0.89721 1.21624 0.99718 0.95657 0.97679 1.21457 0.98492 0.96933 0.97209 1.22356 0.95777 0.93023 0.91736 0.91755 1.22785 0.98531 0.97630 0.98045 1.22799 1.01784 0.96347 0.97025 1.22604 0.96677 0.97277 0.91920 1.61700 1.17843 1.20720 1.32199 1.20666 0.93274 0.95533 0.90962 1.20182 0.99198 0.91043 1.13764 0.91768 0.86171 0.83312 0.81252 0.80666 0.74710 0.94158 0.93531 0.89933 0.90172 0.92737 0.91490 0.89971 0.91789 0.90589 0.90457 0.91832 0.91822 0.83741 0.86451 0.88242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -59.21 13.67 21.62 0.30 -58.91 16 2 C -0.03 -1.52 5.49 84.86 0.47 -1.06 16 3 Si 1.02 44.81 29.55 68.60 2.03 46.84 16 4 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 5 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 6 H -0.25 -10.34 7.11 99.48 0.71 -9.63 16 7 C -0.42 -25.74 9.48 67.94 0.64 -25.09 16 8 H 0.10 5.80 5.18 -2.91 -0.02 5.79 16 9 O -0.23 -15.13 9.74 -20.24 -0.20 -15.33 16 10 C 0.13 7.05 6.66 22.72 0.15 7.20 16 11 C -0.26 -12.46 9.14 22.34 0.20 -12.25 16 12 C -0.05 -1.82 9.78 22.55 0.22 -1.60 16 13 C -0.16 -5.71 4.54 -20.12 -0.09 -5.81 16 14 C 0.00 0.07 9.80 23.82 0.23 0.30 16 15 C -0.23 -4.55 9.90 23.61 0.23 -4.31 16 16 C 0.52 14.22 6.77 86.33 0.58 14.81 16 17 O -0.57 -22.65 12.18 -4.41 -0.05 -22.71 16 18 N -0.72 -13.81 5.55 -467.50 -2.60 -16.41 16 19 C 0.12 2.56 5.67 86.38 0.49 3.05 16 20 C -0.11 -1.41 5.26 30.59 0.16 -1.25 16 21 C -0.10 -1.49 4.92 30.60 0.15 -1.34 16 22 C 0.08 0.95 3.23 45.38 0.15 1.09 16 23 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 24 C -0.13 -1.56 6.49 31.98 0.21 -1.35 16 25 C -0.14 -1.37 6.95 31.79 0.22 -1.14 16 26 C 0.04 0.48 7.58 86.66 0.66 1.14 16 27 N -0.69 -8.55 6.76 -482.37 -3.26 -11.81 16 28 C 0.01 0.58 6.60 22.55 0.15 0.72 16 29 C -0.22 -11.21 9.97 22.35 0.22 -10.99 16 30 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 31 H 0.12 5.76 5.62 -2.91 -0.02 5.75 16 32 H 0.15 4.35 8.06 -2.91 -0.02 4.32 16 33 H 0.17 2.47 8.06 -2.91 -0.02 2.44 16 34 H 0.18 1.66 8.06 -2.91 -0.02 1.64 16 35 H 0.42 4.52 8.45 -92.71 -0.78 3.74 16 36 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.08 0.96 7.95 -2.39 -0.02 0.94 16 40 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.06 0.93 8.06 -2.39 -0.02 0.91 16 44 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 45 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 48 H 0.35 3.16 8.91 -89.70 -0.80 2.36 16 49 H 0.12 4.36 7.02 -2.91 -0.02 4.34 16 50 H 0.10 5.08 8.06 -2.91 -0.02 5.06 16 Total: -1.00 -85.72 408.32 0.64 -85.08 By element: Atomic # 1 Polarization: 31.76 SS G_CDS: -0.63 Total: 31.13 kcal Atomic # 6 Polarization: -42.94 SS G_CDS: 5.05 Total: -37.88 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -5.56 Total: -87.13 kcal Atomic # 8 Polarization: -37.78 SS G_CDS: -0.25 Total: -38.04 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -85.72 0.64 -85.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493790802.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.081 kcal (2) G-P(sol) polarization free energy of solvation -85.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds