Wall clock time and date at job start Wed Apr 1 2020 03:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86796 * 120.00248 * 2 1 4 4 H 1.48503 * 109.46893 * 269.99897 * 3 2 1 5 5 H 1.48505 * 109.47097 * 29.99018 * 3 2 1 6 6 H 1.48490 * 109.47382 * 149.99666 * 3 2 1 7 7 C 1.38714 * 119.99677 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99914 * 180.02562 * 7 2 1 9 9 O 1.34784 * 120.00468 * 0.02562 * 7 2 1 10 10 C 1.35565 * 117.00244 * 174.94296 * 9 7 2 11 11 C 1.39174 * 119.90192 * 185.28374 * 10 9 7 12 12 C 1.37599 * 120.10787 * 179.72331 * 11 10 9 13 13 C 1.40027 * 119.89021 * 0.56991 * 12 11 10 14 14 C 1.46967 * 120.09713 * 179.68439 * 13 12 11 15 15 C 1.35017 * 120.00092 * 0.02562 * 14 13 12 16 16 C 1.46255 * 120.00395 * 180.02562 * 15 14 13 17 17 O 1.21730 * 119.99665 * 359.97438 * 16 15 14 18 18 N 1.34769 * 120.00507 * 180.02562 * 16 15 14 19 19 C 1.46497 * 120.00341 * 180.02562 * 18 16 15 20 20 C 1.53001 * 109.47411 * 179.97438 * 19 18 16 21 21 C 1.53005 * 109.47097 * 179.97438 * 20 19 18 22 22 C 1.52994 * 109.46847 * 180.02562 * 21 20 19 23 23 H 1.08997 * 109.88232 * 305.42203 * 22 21 20 24 24 C 1.54318 * 109.88686 * 184.22295 * 22 21 20 25 25 C 1.55145 * 103.01917 * 218.30924 * 24 22 21 26 26 C 1.54900 * 101.65418 * 35.65656 * 25 24 22 27 27 N 1.47449 * 109.89310 * 66.45655 * 22 21 20 28 28 C 1.40017 * 119.80316 * 359.70194 * 13 12 11 29 29 C 1.37597 * 119.89584 * 0.02562 * 28 13 12 30 30 H 0.97002 * 119.99909 * 0.02562 * 1 2 3 31 31 H 1.08004 * 119.94684 * 359.97438 * 11 10 9 32 32 H 1.07997 * 120.05435 * 180.24910 * 12 11 10 33 33 H 1.08001 * 119.99763 * 180.02562 * 14 13 12 34 34 H 1.08002 * 120.00174 * 0.02562 * 15 14 13 35 35 H 0.97003 * 120.00010 * 0.02562 * 18 16 15 36 36 H 1.09005 * 109.47236 * 300.00012 * 19 18 16 37 37 H 1.08993 * 109.47303 * 59.99562 * 19 18 16 38 38 H 1.08990 * 109.47322 * 299.99835 * 20 19 18 39 39 H 1.08997 * 109.46833 * 60.00191 * 20 19 18 40 40 H 1.08998 * 109.46931 * 299.99875 * 21 20 19 41 41 H 1.09001 * 109.47126 * 60.00030 * 21 20 19 42 42 H 1.08995 * 110.71083 * 336.69178 * 24 22 21 43 43 H 1.09002 * 110.71026 * 99.92900 * 24 22 21 44 44 H 1.08996 * 110.99344 * 277.55985 * 25 24 22 45 45 H 1.09001 * 111.02084 * 153.76306 * 25 24 22 46 46 H 1.08996 * 110.37307 * 204.10092 * 26 25 24 47 47 H 1.09000 * 110.47075 * 81.80263 * 26 25 24 48 48 H 1.00894 * 110.99695 * 240.68373 * 27 22 21 49 49 H 1.07997 * 120.05684 * 179.97438 * 28 13 12 50 50 H 1.08001 * 119.94863 * 180.02562 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5465 1.4401 0.7000 7 6 2.0086 -1.2013 0.0005 8 1 3.0886 -1.2014 0.0010 9 8 1.3347 -2.3686 0.0005 10 6 2.0690 -3.5032 -0.1054 11 6 1.4306 -4.7344 -0.2224 12 6 2.1717 -5.8882 -0.3359 13 6 3.5704 -5.8233 -0.3215 14 6 4.3664 -7.0535 -0.4355 15 6 3.7492 -8.2484 -0.5548 16 6 4.5413 -9.4727 -0.6676 17 8 5.7572 -9.4143 -0.6544 18 7 3.9253 -10.6653 -0.7872 19 6 4.7187 -11.8917 -0.8997 20 6 3.7824 -13.0955 -1.0221 21 6 4.6112 -14.3763 -1.1402 22 6 3.6749 -15.5800 -1.2633 23 1 2.9724 -15.5899 -0.4300 24 6 4.4974 -16.8856 -1.2764 25 6 3.7442 -17.7628 -2.3110 26 6 3.2874 -16.7040 -3.3453 27 7 2.9388 -15.5147 -2.5392 28 6 4.2084 -4.5831 -0.1979 29 6 3.4590 -3.4341 -0.0906 30 1 -0.4850 0.8401 -0.0004 31 1 0.3517 -4.7839 -0.2283 32 1 1.6755 -6.8427 -0.4308 33 1 5.4452 -7.0016 -0.4238 34 1 2.6705 -8.3002 -0.5669 35 1 2.9564 -10.7118 -0.7989 36 1 5.3540 -11.8337 -1.7836 37 1 5.3409 -12.0046 -0.0120 38 1 3.1476 -13.1535 -0.1381 39 1 3.1600 -12.9829 -1.9098 40 1 5.2458 -14.3181 -2.0245 41 1 5.2340 -14.4891 -0.2528 42 1 5.5191 -16.6943 -1.6045 43 1 4.4891 -17.3564 -0.2934 44 1 2.8872 -18.2571 -1.8536 45 1 4.4144 -18.4910 -2.7678 46 1 2.4148 -17.0603 -3.8928 47 1 4.0982 -16.4704 -4.0352 48 1 1.9437 -15.4645 -2.3803 49 1 5.2869 -4.5283 -0.1859 50 1 3.9501 -2.4769 0.0044 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493790804.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:53 Heat of formation + Delta-G solvation = -40.192919 kcal Electronic energy + Delta-G solvation = -27222.282668 eV Core-core repulsion = 23214.430381 eV Total energy + Delta-G solvation = -4007.852286 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -39.61867 -39.25216 -39.04938 -36.90041 -35.75476 -33.22227 -33.06313 -32.26160 -30.56551 -30.41359 -29.55233 -28.10682 -25.85602 -25.36472 -23.18934 -22.30820 -22.05383 -21.30604 -20.81002 -20.24759 -19.21695 -18.12196 -17.54169 -17.10751 -16.93350 -16.11955 -15.76640 -15.54869 -14.89615 -14.76138 -14.41185 -14.39361 -14.08294 -13.97607 -13.81047 -13.64764 -13.32239 -13.20598 -13.02179 -12.85810 -12.56436 -12.34654 -12.06486 -11.91246 -11.75307 -11.71199 -11.69410 -11.48096 -11.23379 -11.12097 -11.10228 -11.03323 -10.96650 -10.66240 -10.52529 -9.72615 -9.57350 -9.48464 -9.06065 -8.98311 -8.82314 -8.36288 -7.09132 -6.63770 -4.18708 1.11178 2.15342 2.59509 3.05084 3.06055 3.10501 3.29913 3.63993 3.67257 3.83569 4.14353 4.17870 4.50625 4.53069 4.63791 4.71035 4.84775 4.87966 4.93795 5.02645 5.06630 5.11962 5.12602 5.27889 5.30593 5.32969 5.38008 5.43109 5.50166 5.52551 5.55777 5.63496 5.69203 5.70172 5.76125 5.96437 6.01215 6.03674 6.14410 6.39767 6.43107 6.49891 6.54378 6.64011 6.81370 6.90179 6.93862 7.15069 7.25692 7.30371 7.62439 7.65895 7.81688 8.41292 8.81165 9.48286 10.52965 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.033900 B = 0.001237 C = 0.001205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.767320 B =22635.034729 C =23229.219720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.042 3.958 3 Si 0.944 3.056 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.393 4.393 8 H 0.097 0.903 9 O -0.163 6.163 10 C 0.167 3.833 11 C -0.199 4.199 12 C -0.043 4.043 13 C -0.198 4.198 14 C 0.036 3.964 15 C -0.281 4.281 16 C 0.554 3.446 17 O -0.561 6.561 18 N -0.734 5.734 19 C 0.121 3.879 20 C -0.126 4.126 21 C -0.099 4.099 22 C 0.077 3.923 23 H 0.062 0.938 24 C -0.138 4.138 25 C -0.156 4.156 26 C 0.047 3.953 27 N -0.680 5.680 28 C -0.035 4.035 29 C -0.242 4.242 30 H 0.274 0.726 31 H 0.121 0.879 32 H 0.118 0.882 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.400 0.600 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.066 0.934 45 H 0.074 0.926 46 H 0.066 0.934 47 H 0.077 0.923 48 H 0.339 0.661 49 H 0.114 0.886 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.122 -29.951 -2.785 30.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.164 4.164 3 Si 0.768 3.232 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.469 4.469 8 H 0.114 0.886 9 O -0.064 6.064 10 C 0.110 3.890 11 C -0.219 4.219 12 C -0.062 4.062 13 C -0.199 4.199 14 C 0.016 3.984 15 C -0.302 4.302 16 C 0.346 3.654 17 O -0.442 6.442 18 N -0.385 5.385 19 C -0.003 4.003 20 C -0.164 4.164 21 C -0.138 4.138 22 C -0.033 4.033 23 H 0.080 0.920 24 C -0.176 4.176 25 C -0.195 4.195 26 C -0.082 4.082 27 N -0.309 5.309 28 C -0.054 4.054 29 C -0.261 4.261 30 H 0.084 0.916 31 H 0.139 0.861 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.233 0.767 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.093 0.907 46 H 0.084 0.916 47 H 0.095 0.905 48 H 0.155 0.845 49 H 0.132 0.868 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.972 -29.214 -3.073 29.976 hybrid contribution -0.563 0.020 0.474 0.736 sum 5.409 -29.194 -2.600 29.804 Atomic orbital electron populations 1.70013 1.06141 1.28227 1.44150 1.25382 0.95889 0.99116 0.96019 0.85653 0.79012 0.79559 0.78950 1.19630 1.20055 1.18952 1.21476 0.92104 0.80581 1.52735 0.88554 1.83902 1.34954 1.11787 1.75765 1.19614 0.90332 0.87881 0.91149 1.20146 0.99752 0.90153 1.11808 1.20884 0.92656 0.96900 0.95722 1.18477 0.92990 0.92340 1.16113 1.22282 0.99194 0.91006 0.85876 1.22452 0.99725 0.91957 1.16107 1.18422 0.87661 0.83901 0.75448 1.90772 1.14324 1.87457 1.51621 1.45862 1.10188 1.06292 1.76169 1.21295 0.94111 0.83100 1.01804 1.21727 0.98486 0.93411 1.02736 1.21502 0.97416 0.92905 1.01997 1.22198 0.95441 0.94489 0.91188 0.92014 1.22844 0.99977 0.95245 0.99541 1.23149 1.00418 0.98466 0.97446 1.22867 1.01021 0.88343 0.95947 1.61574 1.11747 1.41190 1.16389 1.20987 0.98596 0.91387 0.94388 1.21101 0.93640 0.99130 1.12258 0.91621 0.86144 0.86400 0.85952 0.85920 0.76661 0.91813 0.92046 0.91952 0.90317 0.91200 0.91736 0.90673 0.91046 0.91549 0.90749 0.91554 0.90498 0.84519 0.86810 0.85129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.92 13.67 55.48 0.76 -23.17 16 2 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 3 Si 0.94 19.60 29.55 -169.99 -5.02 14.58 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 7 C -0.39 -10.51 9.48 30.91 0.29 -10.21 16 8 H 0.10 2.37 5.18 -52.48 -0.27 2.09 16 9 O -0.16 -4.45 9.74 0.75 0.01 -4.44 16 10 C 0.17 3.86 6.66 -38.88 -0.26 3.60 16 11 C -0.20 -4.01 9.97 -39.47 -0.39 -4.41 16 12 C -0.04 -0.75 9.40 -39.14 -0.37 -1.12 16 13 C -0.20 -3.44 5.87 -105.02 -0.62 -4.05 16 14 C 0.04 0.57 9.45 -37.19 -0.35 0.21 16 15 C -0.28 -3.96 9.41 -37.51 -0.35 -4.31 16 16 C 0.55 8.09 7.74 -13.04 -0.10 7.99 16 17 O -0.56 -10.22 16.23 5.16 0.08 -10.14 16 18 N -0.73 -7.92 5.55 -61.76 -0.34 -8.27 16 19 C 0.12 1.16 5.67 -4.04 -0.02 1.14 16 20 C -0.13 -0.85 5.23 -26.73 -0.14 -0.99 16 21 C -0.10 -0.62 4.76 -26.73 -0.13 -0.74 16 22 C 0.08 0.42 3.34 -66.72 -0.22 0.19 16 23 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 24 C -0.14 -0.67 6.47 -24.91 -0.16 -0.83 16 25 C -0.16 -0.68 7.08 -24.59 -0.17 -0.85 16 26 C 0.05 0.24 7.57 -2.30 -0.02 0.22 16 27 N -0.68 -3.88 6.56 -103.82 -0.68 -4.56 16 28 C -0.04 -0.64 9.78 -39.15 -0.38 -1.02 16 29 C -0.24 -5.05 9.14 -39.47 -0.36 -5.41 16 30 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.12 2.30 8.06 -52.48 -0.42 1.88 16 32 H 0.12 1.65 6.16 -52.49 -0.32 1.33 16 33 H 0.12 1.91 7.52 -52.49 -0.39 1.51 16 34 H 0.12 1.47 6.07 -52.49 -0.32 1.15 16 35 H 0.40 3.26 8.45 -40.82 -0.34 2.92 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.57 7.82 -51.93 -0.41 0.16 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.39 7.85 -51.93 -0.41 -0.02 16 43 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 46 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.34 1.59 8.91 -39.29 -0.35 1.24 16 49 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 50 H 0.13 2.70 5.62 -52.49 -0.29 2.40 16 LS Contribution 412.72 15.07 6.22 6.22 Total: -1.00 -31.47 412.72 -10.58 -42.05 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -7.74 Total: 7.32 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: -3.86 Total: -19.58 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: -0.27 Total: -35.99 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: 0.09 Total: -14.58 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -31.47 -10.58 -42.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493790804.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.853 kcal (2) G-P(sol) polarization free energy of solvation -31.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds