Wall clock time and date at job start Wed Apr 1 2020 03:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86796 * 120.00248 * 2 1 4 4 H 1.48503 * 109.46893 * 269.99897 * 3 2 1 5 5 H 1.48505 * 109.47097 * 29.99018 * 3 2 1 6 6 H 1.48490 * 109.47382 * 149.99666 * 3 2 1 7 7 C 1.38714 * 119.99677 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99914 * 180.02562 * 7 2 1 9 9 O 1.34784 * 120.00468 * 0.02562 * 7 2 1 10 10 C 1.35565 * 117.00244 * 174.94296 * 9 7 2 11 11 C 1.39174 * 119.90192 * 185.28374 * 10 9 7 12 12 C 1.37599 * 120.10787 * 179.72331 * 11 10 9 13 13 C 1.40027 * 119.89021 * 0.56991 * 12 11 10 14 14 C 1.46967 * 120.09713 * 179.68439 * 13 12 11 15 15 C 1.35017 * 120.00092 * 0.02562 * 14 13 12 16 16 C 1.46255 * 120.00395 * 180.02562 * 15 14 13 17 17 O 1.21730 * 119.99665 * 359.97438 * 16 15 14 18 18 N 1.34769 * 120.00507 * 180.02562 * 16 15 14 19 19 C 1.46497 * 120.00341 * 180.02562 * 18 16 15 20 20 C 1.53001 * 109.47411 * 179.97438 * 19 18 16 21 21 C 1.53005 * 109.47097 * 179.97438 * 20 19 18 22 22 C 1.52994 * 109.46847 * 180.02562 * 21 20 19 23 23 H 1.08997 * 109.88232 * 305.42203 * 22 21 20 24 24 C 1.54318 * 109.88686 * 184.22295 * 22 21 20 25 25 C 1.55145 * 103.01917 * 218.30924 * 24 22 21 26 26 C 1.54900 * 101.65418 * 35.65656 * 25 24 22 27 27 N 1.47449 * 109.89310 * 66.45655 * 22 21 20 28 28 C 1.40017 * 119.80316 * 359.70194 * 13 12 11 29 29 C 1.37597 * 119.89584 * 0.02562 * 28 13 12 30 30 H 0.97002 * 119.99909 * 0.02562 * 1 2 3 31 31 H 1.08004 * 119.94684 * 359.97438 * 11 10 9 32 32 H 1.07997 * 120.05435 * 180.24910 * 12 11 10 33 33 H 1.08001 * 119.99763 * 180.02562 * 14 13 12 34 34 H 1.08002 * 120.00174 * 0.02562 * 15 14 13 35 35 H 0.97003 * 120.00010 * 0.02562 * 18 16 15 36 36 H 1.09005 * 109.47236 * 300.00012 * 19 18 16 37 37 H 1.08993 * 109.47303 * 59.99562 * 19 18 16 38 38 H 1.08990 * 109.47322 * 299.99835 * 20 19 18 39 39 H 1.08997 * 109.46833 * 60.00191 * 20 19 18 40 40 H 1.08998 * 109.46931 * 299.99875 * 21 20 19 41 41 H 1.09001 * 109.47126 * 60.00030 * 21 20 19 42 42 H 1.08995 * 110.71083 * 336.69178 * 24 22 21 43 43 H 1.09002 * 110.71026 * 99.92900 * 24 22 21 44 44 H 1.08996 * 110.99344 * 277.55985 * 25 24 22 45 45 H 1.09001 * 111.02084 * 153.76306 * 25 24 22 46 46 H 1.08996 * 110.37307 * 204.10092 * 26 25 24 47 47 H 1.09000 * 110.47075 * 81.80263 * 26 25 24 48 48 H 1.00894 * 110.99695 * 240.68373 * 27 22 21 49 49 H 1.07997 * 120.05684 * 179.97438 * 28 13 12 50 50 H 1.08001 * 119.94863 * 180.02562 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5465 1.4401 0.7000 7 6 2.0086 -1.2013 0.0005 8 1 3.0886 -1.2014 0.0010 9 8 1.3347 -2.3686 0.0005 10 6 2.0690 -3.5032 -0.1054 11 6 1.4306 -4.7344 -0.2224 12 6 2.1717 -5.8882 -0.3359 13 6 3.5704 -5.8233 -0.3215 14 6 4.3664 -7.0535 -0.4355 15 6 3.7492 -8.2484 -0.5548 16 6 4.5413 -9.4727 -0.6676 17 8 5.7572 -9.4143 -0.6544 18 7 3.9253 -10.6653 -0.7872 19 6 4.7187 -11.8917 -0.8997 20 6 3.7824 -13.0955 -1.0221 21 6 4.6112 -14.3763 -1.1402 22 6 3.6749 -15.5800 -1.2633 23 1 2.9724 -15.5899 -0.4300 24 6 4.4974 -16.8856 -1.2764 25 6 3.7442 -17.7628 -2.3110 26 6 3.2874 -16.7040 -3.3453 27 7 2.9388 -15.5147 -2.5392 28 6 4.2084 -4.5831 -0.1979 29 6 3.4590 -3.4341 -0.0906 30 1 -0.4850 0.8401 -0.0004 31 1 0.3517 -4.7839 -0.2283 32 1 1.6755 -6.8427 -0.4308 33 1 5.4452 -7.0016 -0.4238 34 1 2.6705 -8.3002 -0.5669 35 1 2.9564 -10.7118 -0.7989 36 1 5.3540 -11.8337 -1.7836 37 1 5.3409 -12.0046 -0.0120 38 1 3.1476 -13.1535 -0.1381 39 1 3.1600 -12.9829 -1.9098 40 1 5.2458 -14.3181 -2.0245 41 1 5.2340 -14.4891 -0.2528 42 1 5.5191 -16.6943 -1.6045 43 1 4.4891 -17.3564 -0.2934 44 1 2.8872 -18.2571 -1.8536 45 1 4.4144 -18.4910 -2.7678 46 1 2.4148 -17.0603 -3.8928 47 1 4.0982 -16.4704 -4.0352 48 1 1.9437 -15.4645 -2.3803 49 1 5.2869 -4.5283 -0.1859 50 1 3.9501 -2.4769 0.0044 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493790804.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:51 Heat of formation + Delta-G solvation = -60.411688 kcal Electronic energy + Delta-G solvation = -27223.159419 eV Core-core repulsion = 23214.430381 eV Total energy + Delta-G solvation = -4008.729038 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.91035 -40.56838 -39.67489 -38.50057 -36.63272 -34.72578 -34.06359 -33.77000 -31.95943 -30.94626 -30.38411 -29.33809 -27.52458 -26.28592 -24.38535 -23.66853 -22.91358 -22.05890 -21.77796 -20.85176 -20.51445 -19.69753 -18.83455 -18.18342 -17.93128 -17.04078 -16.58431 -16.43552 -16.37396 -16.08056 -15.94356 -15.60966 -15.28642 -15.26285 -14.76494 -14.58775 -14.44867 -14.10066 -14.06847 -13.88603 -13.59480 -13.44789 -13.30943 -13.13570 -12.89644 -12.70160 -12.55950 -12.55281 -12.20691 -12.15586 -12.12319 -11.93518 -11.66143 -11.56434 -11.51206 -11.20669 -11.10793 -10.92375 -10.57419 -10.03511 -9.88315 -9.38966 -8.66880 -8.51677 -6.17816 -0.23240 0.59434 1.14809 1.36320 1.46545 1.53198 2.15871 2.32765 2.39209 2.87281 3.18620 3.29288 3.43297 3.70204 3.79788 3.84311 3.95698 4.08897 4.10447 4.14978 4.15942 4.31885 4.36830 4.39360 4.42420 4.49022 4.62496 4.66347 4.67451 4.75333 4.82962 4.93819 4.95510 4.98066 5.02630 5.03979 5.07302 5.14477 5.20518 5.29954 5.30478 5.34653 5.41447 5.45092 5.54663 5.60940 5.64821 5.82537 5.97993 6.00781 6.11376 6.55537 6.64693 6.92831 7.31913 7.69856 8.70457 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.033900 B = 0.001237 C = 0.001205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.767320 B =22635.034729 C =23229.219720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.017 4.017 3 Si 1.017 2.983 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.253 1.253 7 C -0.418 4.418 8 H 0.105 0.895 9 O -0.220 6.220 10 C 0.129 3.871 11 C -0.206 4.206 12 C -0.038 4.038 13 C -0.171 4.171 14 C 0.013 3.987 15 C -0.244 4.244 16 C 0.546 3.454 17 O -0.599 6.599 18 N -0.715 5.715 19 C 0.120 3.880 20 C -0.111 4.111 21 C -0.097 4.097 22 C 0.078 3.922 23 H 0.070 0.930 24 C -0.139 4.139 25 C -0.152 4.152 26 C 0.046 3.954 27 N -0.691 5.691 28 C -0.041 4.041 29 C -0.249 4.249 30 H 0.275 0.725 31 H 0.123 0.877 32 H 0.161 0.839 33 H 0.123 0.877 34 H 0.153 0.847 35 H 0.416 0.584 36 H 0.050 0.950 37 H 0.055 0.945 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.056 0.944 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.066 0.934 48 H 0.345 0.655 49 H 0.144 0.856 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.053 -33.258 -2.864 33.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.215 4.215 3 Si 0.836 3.164 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.176 1.176 7 C -0.494 4.494 8 H 0.122 0.878 9 O -0.125 6.125 10 C 0.077 3.923 11 C -0.225 4.225 12 C -0.055 4.055 13 C -0.172 4.172 14 C -0.006 4.006 15 C -0.265 4.265 16 C 0.337 3.663 17 O -0.483 6.483 18 N -0.366 5.366 19 C -0.004 4.004 20 C -0.149 4.149 21 C -0.136 4.136 22 C -0.032 4.032 23 H 0.088 0.912 24 C -0.178 4.178 25 C -0.191 4.191 26 C -0.084 4.084 27 N -0.321 5.321 28 C -0.059 4.059 29 C -0.268 4.268 30 H 0.084 0.916 31 H 0.141 0.859 32 H 0.178 0.822 33 H 0.141 0.859 34 H 0.171 0.829 35 H 0.253 0.747 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.090 0.910 45 H 0.096 0.904 46 H 0.093 0.907 47 H 0.084 0.916 48 H 0.162 0.838 49 H 0.161 0.839 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.907 -32.616 -3.160 33.488 hybrid contribution -0.658 0.386 0.437 0.879 sum 6.249 -32.229 -2.724 32.942 Atomic orbital electron populations 1.70146 1.08047 1.29090 1.47746 1.26583 0.96804 1.02701 0.95461 0.84600 0.77911 0.74535 0.79308 1.18806 1.19499 1.17609 1.21901 0.92718 0.81256 1.53488 0.87760 1.83882 1.36218 1.12739 1.79650 1.20194 0.91535 0.88037 0.92522 1.20420 1.00388 0.90127 1.11584 1.21292 0.92594 0.97543 0.94109 1.18791 0.93294 0.92794 1.12288 1.22168 0.99226 0.90670 0.88586 1.22783 1.01127 0.91130 1.11436 1.18593 0.87187 0.85036 0.75447 1.90774 1.16067 1.88071 1.53356 1.45787 1.11238 1.05623 1.73924 1.21379 0.94558 0.83547 1.00871 1.21615 0.97868 0.92128 1.03294 1.21481 0.97456 0.93107 1.01588 1.22179 0.95435 0.94210 0.91401 0.91224 1.22854 0.99616 0.95205 1.00077 1.23125 1.00584 0.98289 0.97084 1.22866 1.01099 0.88407 0.95990 1.61540 1.12274 1.41676 1.16580 1.21310 1.00079 0.90727 0.93765 1.21196 0.93082 1.00091 1.12417 0.91592 0.85860 0.82168 0.85890 0.82924 0.74691 0.93168 0.92681 0.90585 0.90355 0.92536 0.91325 0.91305 0.90344 0.91041 0.90370 0.90650 0.91553 0.83836 0.83873 0.85782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.42 13.67 21.62 0.30 -54.13 16 2 C -0.02 -0.92 5.49 84.86 0.47 -0.45 16 3 Si 1.02 41.60 29.55 68.60 2.03 43.63 16 4 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 5 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 6 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 7 C -0.42 -23.61 9.48 67.93 0.64 -22.97 16 8 H 0.11 5.39 5.18 -2.91 -0.02 5.38 16 9 O -0.22 -12.78 9.74 -20.24 -0.20 -12.97 16 10 C 0.13 6.18 6.66 22.72 0.15 6.34 16 11 C -0.21 -8.23 9.97 22.34 0.22 -8.00 16 12 C -0.04 -1.18 9.40 22.55 0.21 -0.97 16 13 C -0.17 -5.39 5.87 -20.13 -0.12 -5.51 16 14 C 0.01 0.37 9.45 23.82 0.23 0.59 16 15 C -0.24 -5.71 9.41 23.61 0.22 -5.49 16 16 C 0.55 14.01 7.74 86.33 0.67 14.68 16 17 O -0.60 -20.45 16.23 -4.45 -0.07 -20.52 16 18 N -0.71 -12.76 5.55 -467.51 -2.59 -15.36 16 19 C 0.12 2.01 5.67 86.38 0.49 2.50 16 20 C -0.11 -1.18 5.23 30.60 0.16 -1.02 16 21 C -0.10 -1.01 4.76 30.59 0.15 -0.87 16 22 C 0.08 0.67 3.34 45.26 0.15 0.82 16 23 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 24 C -0.14 -1.10 6.47 31.78 0.21 -0.89 16 25 C -0.15 -1.04 7.08 31.98 0.23 -0.82 16 26 C 0.05 0.38 7.57 86.77 0.66 1.04 16 27 N -0.69 -6.47 6.56 -482.38 -3.17 -9.64 16 28 C -0.04 -1.40 9.78 22.55 0.22 -1.18 16 29 C -0.25 -10.51 9.14 22.34 0.20 -10.31 16 30 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 31 H 0.12 4.75 8.06 -2.91 -0.02 4.73 16 32 H 0.16 3.61 6.16 -2.91 -0.02 3.59 16 33 H 0.12 3.46 7.52 -2.91 -0.02 3.44 16 34 H 0.15 2.65 6.07 -2.91 -0.02 2.64 16 35 H 0.42 4.79 8.45 -92.71 -0.78 4.01 16 36 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.08 0.89 7.82 -2.39 -0.02 0.87 16 40 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.07 0.63 7.85 -2.39 -0.02 0.61 16 43 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 46 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.35 2.43 8.91 -89.70 -0.80 1.63 16 49 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 50 H 0.12 5.31 5.62 -2.91 -0.02 5.29 16 Total: -1.00 -73.36 412.72 0.83 -72.53 By element: Atomic # 1 Polarization: 29.59 SS G_CDS: -0.62 Total: 28.97 kcal Atomic # 6 Polarization: -37.67 SS G_CDS: 5.15 Total: -32.51 kcal Atomic # 7 Polarization: -73.66 SS G_CDS: -5.47 Total: -79.13 kcal Atomic # 8 Polarization: -33.22 SS G_CDS: -0.27 Total: -33.49 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -73.36 0.83 -72.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493790804.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.120 kcal (2) G-P(sol) polarization free energy of solvation -73.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds