Wall clock time and date at job start Wed Apr 1 2020 03:27:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31508 * 1
3 3 Si 1.86797 * 120.00334 * 2 1
4 4 H 1.48502 * 109.47196 * 269.99947 * 3 2 1
5 5 H 1.48500 * 109.47164 * 29.99588 * 3 2 1
6 6 H 1.48503 * 109.47319 * 150.00094 * 3 2 1
7 7 C 1.38726 * 119.99974 * 179.97438 * 2 1 3
8 8 H 1.08002 * 119.99935 * 179.97438 * 7 2 1
9 9 O 1.34784 * 119.99656 * 359.97438 * 7 2 1
10 10 C 1.35574 * 116.99741 * 185.05977 * 9 7 2
11 11 C 1.39177 * 119.89821 * 354.44051 * 10 9 7
12 12 C 1.37599 * 120.09998 * 180.02562 * 11 10 9
13 13 C 1.40022 * 119.89763 * 0.02562 * 12 11 10
14 14 C 1.46957 * 120.10147 * 179.97438 * 13 12 11
15 15 C 1.35022 * 120.00403 * 180.02562 * 14 13 12
16 16 C 1.46248 * 120.00500 * 180.02562 * 15 14 13
17 17 O 1.21721 * 119.99648 * 359.97438 * 16 15 14
18 18 N 1.34778 * 120.00417 * 179.97438 * 16 15 14
19 19 C 1.46500 * 120.00010 * 180.02562 * 18 16 15
20 20 C 1.53000 * 109.46852 * 179.97438 * 19 18 16
21 21 C 1.53004 * 109.47171 * 179.97438 * 20 19 18
22 22 C 1.53000 * 109.47171 * 179.97438 * 21 20 19
23 23 H 1.09002 * 110.33205 * 52.74736 * 22 21 20
24 24 C 1.54906 * 110.37179 * 175.00151 * 22 21 20
25 25 C 1.55142 * 101.68552 * 155.88088 * 24 22 21
26 26 C 1.54357 * 102.99843 * 324.39765 * 25 24 22
27 27 N 1.47445 * 107.25270 * 22.22756 * 26 25 24
28 28 C 1.40022 * 119.79953 * 0.25797 * 13 12 11
29 29 C 1.37602 * 119.89793 * 359.48055 * 28 13 12
30 30 H 0.97000 * 119.99525 * 359.97438 * 1 2 3
31 31 H 1.07999 * 119.94993 * 0.02562 * 11 10 9
32 32 H 1.07999 * 120.05092 * 179.97438 * 12 11 10
33 33 H 1.08004 * 120.00098 * 0.02562 * 14 13 12
34 34 H 1.08004 * 119.99498 * 359.97438 * 15 14 13
35 35 H 0.96996 * 119.99572 * 359.97438 * 18 16 15
36 36 H 1.08994 * 109.47438 * 60.00150 * 19 18 16
37 37 H 1.08998 * 109.47103 * 299.99780 * 19 18 16
38 38 H 1.09008 * 109.46870 * 60.00056 * 20 19 18
39 39 H 1.08998 * 109.47291 * 299.99915 * 20 19 18
40 40 H 1.08993 * 109.46626 * 60.00109 * 21 20 19
41 41 H 1.08998 * 109.47189 * 300.00278 * 21 20 19
42 42 H 1.09003 * 110.99048 * 273.99334 * 24 22 21
43 43 H 1.09002 * 110.99114 * 37.77269 * 24 22 21
44 44 H 1.09005 * 110.70184 * 82.75083 * 25 24 22
45 45 H 1.09002 * 110.70416 * 205.98237 * 25 24 22
46 46 H 1.09005 * 109.84973 * 262.83178 * 26 25 24
47 47 H 1.08995 * 110.04641 * 141.73481 * 26 25 24
48 48 H 1.00902 * 110.99943 * 123.29310 * 27 26 25
49 49 H 1.08003 * 120.05592 * 179.74744 * 28 13 12
50 50 H 1.07997 * 119.95076 * 180.23208 * 29 28 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0463 -1.4001
5 1 1.4466 2.6527 0.6999
6 1 3.5468 1.4400 0.7000
7 6 2.0087 -1.2014 0.0005
8 1 3.0887 -1.2014 0.0001
9 8 1.3347 -2.3686 0.0016
10 6 2.0690 -3.5032 0.1086
11 6 3.4590 -3.4339 0.0942
12 6 4.2084 -4.5829 0.2020
13 6 3.5704 -5.8232 0.3258
14 6 4.3664 -7.0532 0.4407
15 6 3.7491 -8.2482 0.5594
16 6 4.5412 -9.4723 0.6743
17 8 5.7570 -9.4138 0.6624
18 7 3.9251 -10.6651 0.7934
19 6 4.7186 -11.8911 0.9090
20 6 3.7823 -13.0949 1.0314
21 6 4.6110 -14.3755 1.1515
22 6 3.6746 -15.5792 1.2745
23 1 2.9488 -15.5791 0.4613
24 6 4.4880 -16.8976 1.2713
25 6 3.5238 -17.8635 2.0091
26 6 2.8582 -16.9522 3.0622
27 7 2.9856 -15.5638 2.5824
28 6 2.1717 -5.8886 0.3338
29 6 1.4305 -4.7338 0.2309
30 1 -0.4849 0.8401 0.0004
31 1 3.9502 -2.4769 -0.0018
32 1 5.2869 -4.5283 0.1903
33 1 5.4451 -7.0014 0.4301
34 1 2.6704 -8.3000 0.5704
35 1 2.9563 -10.7116 0.8033
36 1 5.3515 -11.8321 1.7945
37 1 5.3431 -12.0046 0.0229
38 1 3.1490 -13.1541 0.1461
39 1 3.1581 -12.9812 1.9177
40 1 5.2445 -14.3165 2.0365
41 1 5.2349 -14.4890 0.2650
42 1 4.6772 -17.2372 0.2529
43 1 5.4215 -16.7818 1.8219
44 1 2.7793 -18.2647 1.3212
45 1 4.0787 -18.6686 2.4906
46 1 3.3663 -17.0615 4.0204
47 1 1.8052 -17.2123 3.1694
48 1 2.0813 -15.1220 2.5096
49 1 1.6754 -6.8435 0.4250
50 1 0.3517 -4.7829 0.2408
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000493790806.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:27:56
Heat of formation + Delta-G solvation = -40.615071 kcal
Electronic energy + Delta-G solvation = -27189.717476 eV
Core-core repulsion = 23181.846884 eV
Total energy + Delta-G solvation = -4007.870592 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-39.62536 -39.21348 -39.04167 -36.91000 -35.80271 -33.25414 -33.10225 -32.27013
-30.67259 -30.42196 -29.57904 -28.11575 -25.85225 -25.35242 -23.17196 -22.26882
-22.04562 -21.30427 -20.85979 -20.33652 -19.23500 -18.13360 -17.44297 -17.11823
-16.94336 -16.25722 -15.83731 -15.52298 -14.90577 -14.76323 -14.59110 -14.40388
-13.95336 -13.90668 -13.80640 -13.59546 -13.35332 -13.17403 -13.02748 -12.82775
-12.57517 -12.45603 -12.21560 -11.92147 -11.78205 -11.72773 -11.70561 -11.59688
-11.20080 -11.12280 -11.10201 -11.03288 -11.01847 -10.66955 -10.53081 -9.74211
-9.59028 -9.48405 -9.08446 -8.92490 -8.83341 -8.37120 -7.10087 -6.64424
-4.19322 1.09887 2.14541 2.58401 3.04470 3.05540 3.10283 3.26915
3.62458 3.67660 3.83026 4.11931 4.20206 4.49542 4.52220 4.56016
4.65359 4.79096 4.87124 4.93308 5.01662 5.05638 5.11472 5.13899
5.26744 5.28470 5.29795 5.37372 5.42736 5.46716 5.51396 5.54775
5.62841 5.68386 5.69948 5.75490 5.89734 5.95803 6.02532 6.13443
6.39482 6.42529 6.48796 6.52761 6.62855 6.80488 6.88100 6.93059
7.14229 7.24871 7.29477 7.59928 7.65059 7.81000 8.39276 8.80487
9.47523 10.52267
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.033397 B = 0.001232 C = 0.001198
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 838.203504 B =22715.890064 C =23366.050468
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.852 5.852
2 C 0.042 3.958
3 Si 0.944 3.056
4 H -0.271 1.271
5 H -0.275 1.275
6 H -0.265 1.265
7 C -0.394 4.394
8 H 0.097 0.903
9 O -0.163 6.163
10 C 0.167 3.833
11 C -0.242 4.242
12 C -0.035 4.035
13 C -0.198 4.198
14 C 0.037 3.963
15 C -0.282 4.282
16 C 0.554 3.446
17 O -0.560 6.560
18 N -0.734 5.734
19 C 0.121 3.879
20 C -0.129 4.129
21 C -0.101 4.101
22 C 0.075 3.925
23 H 0.052 0.948
24 C -0.127 4.127
25 C -0.145 4.145
26 C 0.046 3.954
27 N -0.680 5.680
28 C -0.043 4.043
29 C -0.199 4.199
30 H 0.274 0.726
31 H 0.131 0.869
32 H 0.114 0.886
33 H 0.123 0.877
34 H 0.123 0.877
35 H 0.399 0.601
36 H 0.065 0.935
37 H 0.063 0.937
38 H 0.063 0.937
39 H 0.074 0.926
40 H 0.074 0.926
41 H 0.067 0.933
42 H 0.073 0.927
43 H 0.077 0.923
44 H 0.065 0.935
45 H 0.074 0.926
46 H 0.074 0.926
47 H 0.050 0.950
48 H 0.339 0.661
49 H 0.118 0.882
50 H 0.121 0.879
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.881 -29.599 2.364 30.092
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.485 5.485
2 C -0.164 4.164
3 Si 0.768 3.232
4 H -0.196 1.196
5 H -0.200 1.200
6 H -0.189 1.189
7 C -0.469 4.469
8 H 0.115 0.885
9 O -0.064 6.064
10 C 0.110 3.890
11 C -0.261 4.261
12 C -0.053 4.053
13 C -0.200 4.200
14 C 0.017 3.983
15 C -0.303 4.303
16 C 0.346 3.654
17 O -0.441 6.441
18 N -0.386 5.386
19 C -0.003 4.003
20 C -0.167 4.167
21 C -0.139 4.139
22 C -0.034 4.034
23 H 0.070 0.930
24 C -0.165 4.165
25 C -0.183 4.183
26 C -0.083 4.083
27 N -0.310 5.310
28 C -0.062 4.062
29 C -0.219 4.219
30 H 0.084 0.916
31 H 0.149 0.851
32 H 0.132 0.868
33 H 0.141 0.859
34 H 0.141 0.859
35 H 0.233 0.767
36 H 0.083 0.917
37 H 0.081 0.919
38 H 0.082 0.918
39 H 0.092 0.908
40 H 0.093 0.907
41 H 0.085 0.915
42 H 0.092 0.908
43 H 0.095 0.905
44 H 0.084 0.916
45 H 0.093 0.907
46 H 0.092 0.908
47 H 0.069 0.931
48 H 0.155 0.845
49 H 0.136 0.864
50 H 0.139 0.861
Dipole moment (debyes) X Y Z Total
from point charges 5.856 -29.163 2.728 29.870
hybrid contribution -0.848 0.395 -0.575 1.098
sum 5.007 -28.768 2.153 29.280
Atomic orbital electron populations
1.70014 1.06145 1.28236 1.44116 1.25387 0.95889 0.99122 0.96008
0.85655 0.79029 0.79553 0.78942 1.19640 1.20040 1.18935 1.21480
0.92107 0.80578 1.52742 0.88544 1.83904 1.34955 1.11799 1.75734
1.19616 0.90332 0.87885 0.91149 1.21101 0.93638 0.99131 1.12244
1.20990 0.98600 0.91389 0.94364 1.18473 0.92988 0.92340 1.16152
1.22284 0.99201 0.91001 0.85805 1.22446 0.99717 0.91954 1.16200
1.18419 0.87663 0.83882 0.75435 1.90772 1.14320 1.87434 1.51569
1.45863 1.10161 1.06309 1.76260 1.21280 0.94052 0.82974 1.01949
1.21772 0.98601 0.93786 1.02508 1.21464 0.97561 0.92448 1.02471
1.22416 0.95593 0.95059 0.90350 0.92970 1.22753 0.98806 0.94106
1.00804 1.22804 0.98896 0.98426 0.98188 1.22589 0.99508 0.87466
0.98718 1.61761 1.25413 1.16954 1.26905 1.20883 0.92655 0.96886
0.95734 1.20148 0.99753 0.90137 1.11823 0.91614 0.85123 0.86804
0.85944 0.85927 0.76687 0.91700 0.91908 0.91804 0.90764 0.90718
0.91454 0.90840 0.90451 0.91574 0.90741 0.90780 0.93130 0.84472
0.86414 0.86143
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.85 -23.88 13.67 55.48 0.76 -23.12 16
2 C 0.04 1.10 5.49 -17.51 -0.10 1.01 16
3 Si 0.94 19.56 29.55 -169.99 -5.02 14.53 16
4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16
5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16
6 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16
7 C -0.39 -10.49 9.48 30.91 0.29 -10.19 16
8 H 0.10 2.36 5.18 -52.49 -0.27 2.09 16
9 O -0.16 -4.44 9.74 0.72 0.01 -4.43 16
10 C 0.17 3.84 6.66 -38.88 -0.26 3.58 16
11 C -0.24 -5.03 9.14 -39.47 -0.36 -5.39 16
12 C -0.04 -0.63 9.78 -39.15 -0.38 -1.01 16
13 C -0.20 -3.42 5.87 -105.03 -0.62 -4.04 16
14 C 0.04 0.57 9.45 -37.19 -0.35 0.22 16
15 C -0.28 -3.92 9.41 -37.51 -0.35 -4.28 16
16 C 0.55 7.98 7.74 -13.04 -0.10 7.88 16
17 O -0.56 -10.11 16.23 5.17 0.08 -10.03 16
18 N -0.73 -7.73 5.55 -61.76 -0.34 -8.07 16
19 C 0.12 1.13 5.67 -4.04 -0.02 1.11 16
20 C -0.13 -0.82 5.26 -26.73 -0.14 -0.96 16
21 C -0.10 -0.61 4.92 -26.73 -0.13 -0.74 16
22 C 0.08 0.42 3.23 -66.19 -0.21 0.20 16
23 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16
24 C -0.13 -0.64 6.49 -24.59 -0.16 -0.80 16
25 C -0.14 -0.66 6.95 -24.89 -0.17 -0.83 16
26 C 0.05 0.24 7.58 -2.81 -0.02 0.22 16
27 N -0.68 -4.06 6.76 -103.82 -0.70 -4.76 16
28 C -0.04 -0.74 9.40 -39.15 -0.37 -1.11 16
29 C -0.20 -4.00 9.97 -39.46 -0.39 -4.39 16
30 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16
31 H 0.13 2.69 5.62 -52.49 -0.29 2.39 16
32 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16
33 H 0.12 1.90 7.52 -52.48 -0.39 1.50 16
34 H 0.12 1.45 6.07 -52.48 -0.32 1.13 16
35 H 0.40 3.13 8.45 -40.82 -0.34 2.79 16
36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16
37 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16
38 H 0.06 0.37 8.14 -51.92 -0.42 -0.06 16
39 H 0.07 0.48 7.95 -51.93 -0.41 0.07 16
40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
41 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16
42 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16
43 H 0.08 0.42 8.06 -51.93 -0.42 0.01 16
44 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16
45 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16
46 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16
47 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16
48 H 0.34 1.72 8.91 -39.29 -0.35 1.37 16
49 H 0.12 1.64 6.16 -52.48 -0.32 1.32 16
50 H 0.12 2.30 8.06 -52.49 -0.42 1.87 16
LS Contribution 413.23 15.07 6.23 6.23
Total: -1.00 -31.44 413.23 -10.60 -42.05
By element:
Atomic # 1 Polarization: 14.88 SS G_CDS: -7.76 Total: 7.12 kcal
Atomic # 6 Polarization: -15.66 SS G_CDS: -3.85 Total: -19.52 kcal
Atomic # 7 Polarization: -35.67 SS G_CDS: -0.29 Total: -35.96 kcal
Atomic # 8 Polarization: -14.55 SS G_CDS: 0.09 Total: -14.45 kcal
Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.53 kcal
Total LS contribution 6.23 Total: 6.23 kcal
Total: -31.44 -10.60 -42.05 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000493790806.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.432 kcal
(2) G-P(sol) polarization free energy of solvation -31.444 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.012 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.603 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.047 kcal
(6) G-S(sol) free energy of system = (1) + (5) -40.615 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds