Wall clock time and date at job start Wed Apr 1 2020 03:27:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31508 * 1
3 3 Si 1.86797 * 120.00334 * 2 1
4 4 H 1.48502 * 109.47196 * 269.99947 * 3 2 1
5 5 H 1.48500 * 109.47164 * 29.99588 * 3 2 1
6 6 H 1.48503 * 109.47319 * 150.00094 * 3 2 1
7 7 C 1.38726 * 119.99974 * 179.97438 * 2 1 3
8 8 H 1.08002 * 119.99935 * 179.97438 * 7 2 1
9 9 O 1.34784 * 119.99656 * 359.97438 * 7 2 1
10 10 C 1.35574 * 116.99741 * 185.05977 * 9 7 2
11 11 C 1.39177 * 119.89821 * 354.44051 * 10 9 7
12 12 C 1.37599 * 120.09998 * 180.02562 * 11 10 9
13 13 C 1.40022 * 119.89763 * 0.02562 * 12 11 10
14 14 C 1.46957 * 120.10147 * 179.97438 * 13 12 11
15 15 C 1.35022 * 120.00403 * 180.02562 * 14 13 12
16 16 C 1.46248 * 120.00500 * 180.02562 * 15 14 13
17 17 O 1.21721 * 119.99648 * 359.97438 * 16 15 14
18 18 N 1.34778 * 120.00417 * 179.97438 * 16 15 14
19 19 C 1.46500 * 120.00010 * 180.02562 * 18 16 15
20 20 C 1.53000 * 109.46852 * 179.97438 * 19 18 16
21 21 C 1.53004 * 109.47171 * 179.97438 * 20 19 18
22 22 C 1.53000 * 109.47171 * 179.97438 * 21 20 19
23 23 H 1.09002 * 110.33205 * 52.74736 * 22 21 20
24 24 C 1.54906 * 110.37179 * 175.00151 * 22 21 20
25 25 C 1.55142 * 101.68552 * 155.88088 * 24 22 21
26 26 C 1.54357 * 102.99843 * 324.39765 * 25 24 22
27 27 N 1.47445 * 107.25270 * 22.22756 * 26 25 24
28 28 C 1.40022 * 119.79953 * 0.25797 * 13 12 11
29 29 C 1.37602 * 119.89793 * 359.48055 * 28 13 12
30 30 H 0.97000 * 119.99525 * 359.97438 * 1 2 3
31 31 H 1.07999 * 119.94993 * 0.02562 * 11 10 9
32 32 H 1.07999 * 120.05092 * 179.97438 * 12 11 10
33 33 H 1.08004 * 120.00098 * 0.02562 * 14 13 12
34 34 H 1.08004 * 119.99498 * 359.97438 * 15 14 13
35 35 H 0.96996 * 119.99572 * 359.97438 * 18 16 15
36 36 H 1.08994 * 109.47438 * 60.00150 * 19 18 16
37 37 H 1.08998 * 109.47103 * 299.99780 * 19 18 16
38 38 H 1.09008 * 109.46870 * 60.00056 * 20 19 18
39 39 H 1.08998 * 109.47291 * 299.99915 * 20 19 18
40 40 H 1.08993 * 109.46626 * 60.00109 * 21 20 19
41 41 H 1.08998 * 109.47189 * 300.00278 * 21 20 19
42 42 H 1.09003 * 110.99048 * 273.99334 * 24 22 21
43 43 H 1.09002 * 110.99114 * 37.77269 * 24 22 21
44 44 H 1.09005 * 110.70184 * 82.75083 * 25 24 22
45 45 H 1.09002 * 110.70416 * 205.98237 * 25 24 22
46 46 H 1.09005 * 109.84973 * 262.83178 * 26 25 24
47 47 H 1.08995 * 110.04641 * 141.73481 * 26 25 24
48 48 H 1.00902 * 110.99943 * 123.29310 * 27 26 25
49 49 H 1.08003 * 120.05592 * 179.74744 * 28 13 12
50 50 H 1.07997 * 119.95076 * 180.23208 * 29 28 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0463 -1.4001
5 1 1.4466 2.6527 0.6999
6 1 3.5468 1.4400 0.7000
7 6 2.0087 -1.2014 0.0005
8 1 3.0887 -1.2014 0.0001
9 8 1.3347 -2.3686 0.0016
10 6 2.0690 -3.5032 0.1086
11 6 3.4590 -3.4339 0.0942
12 6 4.2084 -4.5829 0.2020
13 6 3.5704 -5.8232 0.3258
14 6 4.3664 -7.0532 0.4407
15 6 3.7491 -8.2482 0.5594
16 6 4.5412 -9.4723 0.6743
17 8 5.7570 -9.4138 0.6624
18 7 3.9251 -10.6651 0.7934
19 6 4.7186 -11.8911 0.9090
20 6 3.7823 -13.0949 1.0314
21 6 4.6110 -14.3755 1.1515
22 6 3.6746 -15.5792 1.2745
23 1 2.9488 -15.5791 0.4613
24 6 4.4880 -16.8976 1.2713
25 6 3.5238 -17.8635 2.0091
26 6 2.8582 -16.9522 3.0622
27 7 2.9856 -15.5638 2.5824
28 6 2.1717 -5.8886 0.3338
29 6 1.4305 -4.7338 0.2309
30 1 -0.4849 0.8401 0.0004
31 1 3.9502 -2.4769 -0.0018
32 1 5.2869 -4.5283 0.1903
33 1 5.4451 -7.0014 0.4301
34 1 2.6704 -8.3000 0.5704
35 1 2.9563 -10.7116 0.8033
36 1 5.3515 -11.8321 1.7945
37 1 5.3431 -12.0046 0.0229
38 1 3.1490 -13.1541 0.1461
39 1 3.1581 -12.9812 1.9177
40 1 5.2445 -14.3165 2.0365
41 1 5.2349 -14.4890 0.2650
42 1 4.6772 -17.2372 0.2529
43 1 5.4215 -16.7818 1.8219
44 1 2.7793 -18.2647 1.3212
45 1 4.0787 -18.6686 2.4906
46 1 3.3663 -17.0615 4.0204
47 1 1.8052 -17.2123 3.1694
48 1 2.0813 -15.1220 2.5096
49 1 1.6754 -6.8435 0.4250
50 1 0.3517 -4.7829 0.2408
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000493790806.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:27:55
Heat of formation + Delta-G solvation = -60.911133 kcal
Electronic energy + Delta-G solvation = -27190.597579 eV
Core-core repulsion = 23181.846884 eV
Total energy + Delta-G solvation = -4008.750695 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.189 amu
Computer time = 1.19 seconds
Orbital eigenvalues (eV)
-40.91164 -40.57049 -39.61438 -38.50130 -36.65539 -34.72669 -34.07857 -33.80539
-31.96066 -31.06752 -30.40326 -29.34415 -27.52422 -26.25978 -24.37032 -23.66517
-22.84969 -22.06646 -21.75177 -20.96032 -20.53207 -19.70102 -18.83695 -18.18748
-17.83421 -17.08860 -16.64642 -16.44201 -16.38172 -16.11290 -15.93764 -15.61122
-15.37943 -15.25672 -14.73557 -14.57562 -14.47213 -14.10372 -13.96746 -13.78397
-13.59600 -13.41468 -13.30787 -13.13921 -12.99138 -12.71401 -12.68570 -12.56150
-12.21376 -12.18556 -12.12593 -12.07992 -11.58985 -11.57761 -11.54087 -11.20946
-11.10549 -10.92184 -10.57612 -10.03895 -9.88436 -9.33942 -8.67060 -8.51774
-6.17920 -0.23395 0.59293 1.14733 1.36245 1.46228 1.53291 2.15762
2.32017 2.39090 2.87166 3.18601 3.28140 3.43134 3.68041 3.80478
3.84872 3.95494 4.04014 4.09593 4.11375 4.14179 4.30071 4.33262
4.37228 4.43322 4.48789 4.61396 4.66637 4.67281 4.74528 4.82406
4.89932 4.95410 4.98530 5.00859 5.03831 5.05704 5.16881 5.20404
5.29810 5.30756 5.34516 5.37227 5.43203 5.53536 5.60532 5.64694
5.82402 5.97865 6.01494 6.11263 6.51491 6.64272 6.92712 7.31754
7.69725 8.70303
Molecular weight = 344.19amu
Principal moments of inertia in cm(-1)
A = 0.033397 B = 0.001232 C = 0.001198
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 838.203504 B =22715.890064 C =23366.050468
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.913 5.913
2 C -0.017 4.017
3 Si 1.017 2.983
4 H -0.263 1.263
5 H -0.271 1.271
6 H -0.253 1.253
7 C -0.418 4.418
8 H 0.105 0.895
9 O -0.220 6.220
10 C 0.129 3.871
11 C -0.249 4.249
12 C -0.041 4.041
13 C -0.171 4.171
14 C 0.013 3.987
15 C -0.244 4.244
16 C 0.546 3.454
17 O -0.598 6.598
18 N -0.715 5.715
19 C 0.120 3.880
20 C -0.115 4.115
21 C -0.098 4.098
22 C 0.076 3.924
23 H 0.059 0.941
24 C -0.129 4.129
25 C -0.142 4.142
26 C 0.044 3.956
27 N -0.693 5.693
28 C -0.038 4.038
29 C -0.206 4.206
30 H 0.275 0.725
31 H 0.124 0.876
32 H 0.144 0.856
33 H 0.123 0.877
34 H 0.153 0.847
35 H 0.416 0.584
36 H 0.051 0.949
37 H 0.056 0.944
38 H 0.077 0.923
39 H 0.077 0.923
40 H 0.060 0.940
41 H 0.071 0.929
42 H 0.081 0.919
43 H 0.069 0.931
44 H 0.072 0.928
45 H 0.078 0.922
46 H 0.065 0.935
47 H 0.059 0.941
48 H 0.344 0.656
49 H 0.161 0.839
50 H 0.123 0.877
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.820 -32.898 2.397 33.495
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.550 5.550
2 C -0.215 4.215
3 Si 0.836 3.164
4 H -0.188 1.188
5 H -0.195 1.195
6 H -0.176 1.176
7 C -0.494 4.494
8 H 0.122 0.878
9 O -0.125 6.125
10 C 0.077 3.923
11 C -0.268 4.268
12 C -0.059 4.059
13 C -0.172 4.172
14 C -0.007 4.007
15 C -0.265 4.265
16 C 0.338 3.662
17 O -0.482 6.482
18 N -0.366 5.366
19 C -0.003 4.003
20 C -0.153 4.153
21 C -0.137 4.137
22 C -0.033 4.033
23 H 0.077 0.923
24 C -0.167 4.167
25 C -0.181 4.181
26 C -0.085 4.085
27 N -0.323 5.323
28 C -0.055 4.055
29 C -0.225 4.225
30 H 0.084 0.916
31 H 0.142 0.858
32 H 0.161 0.839
33 H 0.141 0.859
34 H 0.171 0.829
35 H 0.253 0.747
36 H 0.070 0.930
37 H 0.074 0.926
38 H 0.096 0.904
39 H 0.095 0.905
40 H 0.079 0.921
41 H 0.090 0.910
42 H 0.100 0.900
43 H 0.087 0.913
44 H 0.090 0.910
45 H 0.097 0.903
46 H 0.084 0.916
47 H 0.077 0.923
48 H 0.161 0.839
49 H 0.178 0.822
50 H 0.141 0.859
Dipole moment (debyes) X Y Z Total
from point charges 6.799 -32.557 2.768 33.374
hybrid contribution -0.943 0.748 -0.525 1.313
sum 5.856 -31.809 2.243 32.421
Atomic orbital electron populations
1.70147 1.08047 1.29086 1.47746 1.26586 0.96801 1.02700 0.95460
0.84603 0.77895 0.74539 0.79330 1.18752 1.19517 1.17644 1.21902
0.92717 0.81258 1.53492 0.87756 1.83885 1.36213 1.12748 1.79649
1.20197 0.91535 0.88044 0.92523 1.21196 0.93084 1.00092 1.12409
1.21313 1.00080 0.90737 0.93760 1.18790 0.93295 0.92799 1.12281
1.22168 0.99229 0.90671 0.88583 1.22784 1.01131 0.91136 1.11437
1.18585 0.87182 0.85032 0.75445 1.90774 1.16073 1.88057 1.53308
1.45781 1.11229 1.05623 1.73980 1.21365 0.94521 0.83436 1.01010
1.21666 0.97984 0.92333 1.03278 1.21429 0.97557 0.92621 1.02063
1.22401 0.95596 0.94876 0.90422 0.92255 1.22770 0.98505 0.94125
1.01273 1.22800 0.98898 0.98321 0.98059 1.22602 1.00033 0.87355
0.98535 1.61738 1.25878 1.17499 1.27209 1.21292 0.92591 0.97534
0.94117 1.20423 1.00390 0.90118 1.11592 0.91594 0.85788 0.83876
0.85893 0.82914 0.74682 0.93047 0.92575 0.90391 0.90455 0.92089
0.91001 0.89990 0.91265 0.90974 0.90338 0.91615 0.92279 0.83931
0.82153 0.85861
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -54.36 13.67 21.62 0.30 -54.06 16
2 C -0.02 -0.92 5.49 84.86 0.47 -0.45 16
3 Si 1.02 41.54 29.55 68.60 2.03 43.56 16
4 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16
5 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16
6 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16
7 C -0.42 -23.58 9.48 67.94 0.64 -22.94 16
8 H 0.11 5.39 5.18 -2.91 -0.02 5.37 16
9 O -0.22 -12.76 9.74 -20.34 -0.20 -12.96 16
10 C 0.13 6.16 6.66 22.72 0.15 6.31 16
11 C -0.25 -10.48 9.14 22.34 0.20 -10.28 16
12 C -0.04 -1.40 9.78 22.55 0.22 -1.18 16
13 C -0.17 -5.36 5.87 -20.13 -0.12 -5.47 16
14 C 0.01 0.36 9.45 23.82 0.23 0.59 16
15 C -0.24 -5.62 9.41 23.61 0.22 -5.40 16
16 C 0.55 13.76 7.74 86.32 0.67 14.42 16
17 O -0.60 -20.19 16.23 -4.42 -0.07 -20.26 16
18 N -0.71 -12.29 5.55 -467.51 -2.60 -14.88 16
19 C 0.12 1.93 5.67 86.38 0.49 2.42 16
20 C -0.11 -1.11 5.26 30.60 0.16 -0.94 16
21 C -0.10 -0.97 4.92 30.60 0.15 -0.82 16
22 C 0.08 0.67 3.23 45.39 0.15 0.82 16
23 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16
24 C -0.13 -1.06 6.49 31.98 0.21 -0.85 16
25 C -0.14 -1.03 6.95 31.79 0.22 -0.81 16
26 C 0.04 0.38 7.58 86.66 0.66 1.04 16
27 N -0.69 -6.89 6.76 -482.39 -3.26 -10.15 16
28 C -0.04 -1.17 9.40 22.55 0.21 -0.96 16
29 C -0.21 -8.19 9.97 22.35 0.22 -7.97 16
30 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16
31 H 0.12 5.29 5.62 -2.91 -0.02 5.27 16
32 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16
33 H 0.12 3.43 7.52 -2.91 -0.02 3.41 16
34 H 0.15 2.59 6.07 -2.91 -0.02 2.58 16
35 H 0.42 4.47 8.45 -92.71 -0.78 3.69 16
36 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16
37 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16
38 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16
39 H 0.08 0.74 7.95 -2.39 -0.02 0.72 16
40 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16
41 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16
42 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16
43 H 0.07 0.68 8.06 -2.39 -0.02 0.66 16
44 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16
45 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16
46 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16
47 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16
48 H 0.34 2.68 8.91 -89.69 -0.80 1.88 16
49 H 0.16 3.57 6.16 -2.91 -0.02 3.55 16
50 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16
Total: -1.00 -73.46 413.23 0.73 -72.73
By element:
Atomic # 1 Polarization: 29.12 SS G_CDS: -0.62 Total: 28.50 kcal
Atomic # 6 Polarization: -37.63 SS G_CDS: 5.15 Total: -32.48 kcal
Atomic # 7 Polarization: -73.54 SS G_CDS: -5.56 Total: -79.10 kcal
Atomic # 8 Polarization: -32.94 SS G_CDS: -0.27 Total: -33.21 kcal
Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.56 kcal
Total: -73.46 0.73 -72.73 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000493790806.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.816 kcal
(2) G-P(sol) polarization free energy of solvation -73.456 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.639 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.728 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.727 kcal
(6) G-S(sol) free energy of system = (1) + (5) -60.911 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.19 seconds