Wall clock time and date at job start Wed Apr 1 2020 02:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99889 * 2 1 4 4 H 1.48498 * 109.47387 * 240.00262 * 3 2 1 5 5 H 1.48490 * 109.47409 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46625 * 120.00451 * 3 2 1 7 7 C 1.37874 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00499 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99825 * 359.97438 * 7 2 1 10 10 C 1.53121 * 109.52145 * 180.02562 * 9 7 2 11 11 C 1.53042 * 109.27963 * 182.37586 * 10 9 7 12 12 N 1.46845 * 109.51903 * 59.17791 * 11 10 9 13 13 C 1.46903 * 110.99754 * 174.15915 * 12 11 10 14 14 C 1.50698 * 109.47380 * 293.61489 * 13 12 11 15 15 O 1.21279 * 119.99971 * 353.72979 * 14 13 12 16 16 N 1.34777 * 120.00182 * 173.72795 * 14 13 12 17 17 C 1.46493 * 120.00136 * 179.97438 * 16 14 13 18 18 H 1.08998 * 109.40420 * 34.89669 * 17 16 14 19 19 C 1.53069 * 109.43973 * 154.78913 * 17 16 14 20 20 C 1.53400 * 108.30240 * 168.27438 * 19 17 16 21 21 O 1.42822 * 108.39004 * 295.29909 * 20 19 17 22 22 C 1.35845 * 117.85849 * 49.16728 * 21 20 19 23 23 C 1.39149 * 118.49892 * 162.84094 * 22 21 20 24 24 C 1.37973 * 120.21528 * 179.81666 * 23 22 21 25 25 C 1.38289 * 119.95781 * 359.97438 * 24 23 22 26 26 C 1.38107 * 119.98401 * 0.07473 * 25 24 23 27 27 C 1.38373 * 121.80845 * 342.77149 * 22 21 20 28 28 C 1.46843 * 111.20335 * 298.25948 * 12 11 10 29 29 C 1.53033 * 109.52443 * 61.74089 * 28 12 11 30 30 H 0.97004 * 119.99703 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.52422 * 300.12349 * 9 7 2 32 32 H 1.08999 * 109.50393 * 62.43400 * 10 9 7 33 33 H 1.09003 * 109.53855 * 302.33775 * 10 9 7 34 34 H 1.08997 * 109.45760 * 299.16516 * 11 10 9 35 35 H 1.09000 * 109.45319 * 179.19391 * 11 10 9 36 36 H 1.08999 * 109.47186 * 173.61065 * 13 12 11 37 37 H 1.09000 * 109.46941 * 53.61104 * 13 12 11 38 38 H 0.96999 * 120.00160 * 0.02562 * 16 14 13 39 39 H 1.09004 * 109.70086 * 287.98469 * 19 17 16 40 40 H 1.09001 * 109.69688 * 48.53768 * 19 17 16 41 41 H 1.09004 * 109.68433 * 175.57027 * 20 19 17 42 42 H 1.09000 * 109.67848 * 55.02488 * 20 19 17 43 43 H 1.07996 * 119.89451 * 359.84134 * 23 22 21 44 44 H 1.07993 * 120.02341 * 179.97438 * 24 23 22 45 45 H 1.07997 * 120.01129 * 180.02562 * 25 24 23 46 46 H 1.07998 * 119.84457 * 180.02562 * 26 25 24 47 47 H 1.08995 * 109.46316 * 181.76109 * 28 12 11 48 48 H 1.09005 * 109.45730 * 301.72765 * 28 12 11 49 49 H 1.08993 * 109.50757 * 180.88159 * 29 28 12 50 50 H 1.09002 * 109.50193 * 60.76596 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2450 -3.6639 -0.0005 11 6 1.4751 -4.9852 -0.0604 12 7 0.6532 -5.0195 -1.2769 13 6 0.0069 -6.3287 -1.4387 14 6 1.0568 -7.3791 -1.6943 15 8 2.2146 -7.0538 -1.8506 16 7 0.7091 -8.6801 -1.7491 17 6 1.7296 -9.7012 -1.9981 18 1 2.6643 -9.4021 -1.5240 19 6 1.2665 -11.0376 -1.4129 20 6 2.1962 -12.1403 -1.9352 21 8 2.0316 -12.2354 -3.3507 22 6 2.0872 -11.0874 -4.0748 23 6 2.2930 -11.1779 -5.4480 24 6 2.3518 -10.0346 -6.2182 25 6 2.2053 -8.7940 -5.6249 26 6 2.0020 -8.7004 -4.2621 27 6 1.9440 -9.8445 -3.4836 28 6 -0.3405 -3.9383 -1.2771 29 6 0.3752 -2.5859 -1.2535 30 1 -0.4850 0.8401 0.0004 31 1 0.6227 -2.5570 0.8883 32 1 2.8429 -3.6320 0.9103 33 1 2.8996 -3.5845 -0.8685 34 1 0.8315 -5.0704 0.8152 35 1 2.1805 -5.8160 -0.0750 36 1 -0.6829 -6.2916 -2.2819 37 1 -0.5424 -6.5774 -0.5307 38 1 -0.2170 -8.9403 -1.6245 39 1 1.3169 -10.9994 -0.3247 40 1 0.2425 -11.2408 -1.7262 41 1 1.9353 -13.0912 -1.4705 42 1 3.2309 -11.8890 -1.7020 43 1 2.4068 -12.1461 -5.9126 44 1 2.5121 -10.1084 -7.2836 45 1 2.2508 -7.8986 -6.2269 46 1 1.8874 -7.7305 -3.8012 47 1 -0.9538 -4.0091 -2.1753 48 1 -0.9755 -4.0287 -0.3958 49 1 -0.3627 -1.7839 -1.2379 50 1 0.9998 -2.4891 -2.1415 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541953026.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:30 Heat of formation + Delta-G solvation = -43.005443 kcal Electronic energy + Delta-G solvation = -30408.998549 eV Core-core repulsion = 26401.024302 eV Total energy + Delta-G solvation = -4007.974246 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.24035 -39.69748 -37.84067 -37.63354 -35.68850 -33.83091 -32.38626 -31.32930 -30.80340 -30.33469 -29.74733 -27.70617 -25.64290 -24.47594 -23.89426 -22.56547 -22.10428 -21.48681 -20.57712 -20.25572 -18.57328 -18.07576 -17.23242 -16.73404 -16.67915 -16.31663 -16.03930 -15.36815 -15.15381 -14.94270 -14.49248 -14.36903 -14.20454 -13.94794 -13.86152 -13.47437 -13.41477 -13.03367 -12.79275 -12.61446 -12.35454 -12.27534 -12.20694 -11.77001 -11.62984 -11.41525 -11.30244 -11.15005 -10.94079 -10.88411 -10.75777 -10.46517 -10.16793 -9.98229 -9.74948 -9.38165 -9.32230 -8.97374 -8.82463 -8.68024 -8.37957 -8.24846 -7.76194 -5.93318 -3.97849 1.10229 1.27199 2.64916 2.85733 3.02821 3.36323 3.40191 3.43904 3.63600 4.14648 4.29500 4.37374 4.43862 4.49557 4.63660 4.69017 4.88804 4.91690 5.05999 5.10650 5.25423 5.26008 5.33042 5.33885 5.36598 5.38535 5.56236 5.57800 5.79233 5.85692 5.91560 6.10483 6.11515 6.17639 6.22430 6.34994 6.43132 6.46643 6.59170 6.59236 6.70359 6.95502 7.11131 7.17903 7.20000 7.30322 7.47885 7.64038 7.68157 7.85874 8.10344 8.18466 8.25013 8.53908 9.05546 9.66171 11.13007 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021838 B = 0.002205 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.865830 B =12696.208255 C =13229.640092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.508 4.508 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.103 4.103 11 C 0.059 3.941 12 N -0.517 5.517 13 C 0.035 3.965 14 C 0.514 3.486 15 O -0.506 6.506 16 N -0.731 5.731 17 C 0.192 3.808 18 H 0.100 0.900 19 C -0.166 4.166 20 C 0.066 3.934 21 O -0.318 6.318 22 C 0.134 3.866 23 C -0.157 4.157 24 C -0.084 4.084 25 C -0.154 4.154 26 C -0.066 4.066 27 C -0.177 4.177 28 C 0.059 3.941 29 C -0.103 4.103 30 H 0.259 0.741 31 H 0.019 0.981 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.018 0.982 35 H 0.069 0.931 36 H 0.100 0.900 37 H 0.055 0.945 38 H 0.400 0.600 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.112 0.888 42 H 0.068 0.932 43 H 0.128 0.872 44 H 0.127 0.873 45 H 0.124 0.876 46 H 0.137 0.863 47 H 0.056 0.944 48 H 0.024 0.976 49 H 0.094 0.906 50 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.447 -26.225 -6.291 27.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.546 4.546 8 H 0.072 0.928 9 C 0.029 3.971 10 C -0.141 4.141 11 C -0.068 4.068 12 N -0.242 5.242 13 C -0.097 4.097 14 C 0.300 3.700 15 O -0.379 6.379 16 N -0.384 5.384 17 C 0.087 3.913 18 H 0.118 0.882 19 C -0.204 4.204 20 C -0.009 4.009 21 O -0.232 6.232 22 C 0.089 3.911 23 C -0.176 4.176 24 C -0.102 4.102 25 C -0.173 4.173 26 C -0.084 4.084 27 C -0.179 4.179 28 C -0.068 4.068 29 C -0.142 4.142 30 H 0.069 0.931 31 H 0.038 0.962 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.036 0.964 35 H 0.087 0.913 36 H 0.118 0.882 37 H 0.073 0.927 38 H 0.234 0.766 39 H 0.111 0.889 40 H 0.102 0.898 41 H 0.130 0.870 42 H 0.086 0.914 43 H 0.146 0.854 44 H 0.145 0.855 45 H 0.142 0.858 46 H 0.155 0.845 47 H 0.075 0.925 48 H 0.042 0.958 49 H 0.112 0.888 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.462 -25.926 -6.837 26.816 hybrid contribution -0.611 0.799 0.865 1.326 sum -1.073 -25.127 -5.972 25.850 Atomic orbital electron populations 1.69865 1.05846 1.26339 1.51303 1.24964 0.94848 0.98965 0.95265 0.86693 0.79621 0.83296 0.78587 1.20297 1.21413 1.20405 1.21189 0.92898 0.90674 1.49872 0.92798 1.18692 0.92739 0.91856 0.93810 1.21632 0.98671 0.93438 1.00350 1.22215 0.95864 1.00355 0.88368 1.61737 1.22974 0.99925 1.39566 1.21964 0.94800 0.90736 1.02158 1.20868 0.90623 0.82622 0.75841 1.90727 1.19785 1.80718 1.46717 1.46095 1.11263 1.06012 1.75055 1.19563 0.93364 0.87491 0.90832 0.88184 1.22501 1.01173 0.94340 1.02412 1.22928 0.99428 1.00040 0.78533 1.85982 1.87796 1.29504 1.19929 1.18687 0.96857 0.84370 0.91195 1.20538 1.06385 0.99525 0.91121 1.20970 0.97785 0.91858 0.99608 1.21131 1.03299 0.97774 0.95063 1.21360 0.94767 0.98712 0.93538 1.20193 1.08438 0.92732 0.96511 1.22322 0.92861 0.92972 0.98664 1.21661 1.00242 0.92639 0.99629 0.93109 0.96250 0.93356 0.92309 0.96405 0.91277 0.88194 0.92701 0.76596 0.88936 0.89778 0.86986 0.91378 0.85402 0.85506 0.85770 0.84502 0.92534 0.95809 0.88821 0.93657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.59 11.37 55.43 0.63 -24.96 16 2 C 0.06 1.68 5.31 -17.82 -0.09 1.59 16 3 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.51 -14.24 8.56 -34.44 -0.29 -14.53 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.05 1.21 2.16 -91.65 -0.20 1.01 16 10 C -0.10 -2.30 5.32 -26.65 -0.14 -2.44 16 11 C 0.06 1.14 5.12 -3.83 -0.02 1.12 16 12 N -0.52 -9.34 4.35 -236.12 -1.03 -10.36 16 13 C 0.04 0.47 5.45 -4.98 -0.03 0.44 16 14 C 0.51 6.85 5.92 -10.99 -0.07 6.79 16 15 O -0.51 -8.77 12.64 5.56 0.07 -8.70 16 16 N -0.73 -7.06 4.86 -54.87 -0.27 -7.33 16 17 C 0.19 1.88 2.70 -69.01 -0.19 1.69 16 18 H 0.10 1.15 7.57 -51.93 -0.39 0.76 16 19 C -0.17 -1.07 5.67 -26.49 -0.15 -1.22 16 20 C 0.07 0.43 7.03 37.36 0.26 0.69 16 21 O -0.32 -3.08 10.27 -19.25 -0.20 -3.28 16 22 C 0.13 1.46 6.47 -39.19 -0.25 1.21 16 23 C -0.16 -1.59 9.94 -39.34 -0.39 -1.98 16 24 C -0.08 -0.82 10.04 -39.66 -0.40 -1.22 16 25 C -0.15 -1.75 10.04 -39.61 -0.40 -2.15 16 26 C -0.07 -0.84 9.08 -39.53 -0.36 -1.20 16 27 C -0.18 -2.02 5.56 -104.44 -0.58 -2.60 16 28 C 0.06 1.13 5.46 -3.84 -0.02 1.11 16 29 C -0.10 -2.46 5.12 -26.65 -0.14 -2.60 16 30 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 1.30 6.06 -51.93 -0.31 0.99 16 36 H 0.10 1.15 7.98 -51.93 -0.41 0.73 16 37 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 38 H 0.40 2.74 8.58 -40.82 -0.35 2.39 16 39 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.50 8.11 -51.93 -0.42 0.08 16 41 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 44 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 45 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 46 H 0.14 2.02 4.70 -52.49 -0.25 1.77 16 47 H 0.06 0.97 8.01 -51.93 -0.42 0.55 16 48 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 49 H 0.09 2.45 6.18 -51.93 -0.32 2.13 16 50 H 0.04 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 388.10 15.07 5.85 5.85 Total: -1.00 -32.42 388.10 -11.33 -43.75 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -7.91 Total: 2.71 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -3.45 Total: -14.29 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: -0.66 Total: -42.64 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: -0.13 Total: -11.97 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.42 -11.33 -43.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541953026.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.741 kcal (2) G-P(sol) polarization free energy of solvation -32.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds