Wall clock time and date at job start Wed Apr 1 2020 02:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99889 * 2 1 4 4 H 1.48498 * 109.47387 * 240.00262 * 3 2 1 5 5 H 1.48490 * 109.47409 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46625 * 120.00451 * 3 2 1 7 7 C 1.37874 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00499 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99825 * 359.97438 * 7 2 1 10 10 C 1.53121 * 109.52145 * 180.02562 * 9 7 2 11 11 C 1.53042 * 109.27963 * 182.37586 * 10 9 7 12 12 N 1.46845 * 109.51903 * 59.17791 * 11 10 9 13 13 C 1.46903 * 110.99754 * 174.15915 * 12 11 10 14 14 C 1.50698 * 109.47380 * 293.61489 * 13 12 11 15 15 O 1.21279 * 119.99971 * 353.72979 * 14 13 12 16 16 N 1.34777 * 120.00182 * 173.72795 * 14 13 12 17 17 C 1.46493 * 120.00136 * 179.97438 * 16 14 13 18 18 H 1.08998 * 109.40420 * 34.89669 * 17 16 14 19 19 C 1.53069 * 109.43973 * 154.78913 * 17 16 14 20 20 C 1.53400 * 108.30240 * 168.27438 * 19 17 16 21 21 O 1.42822 * 108.39004 * 295.29909 * 20 19 17 22 22 C 1.35845 * 117.85849 * 49.16728 * 21 20 19 23 23 C 1.39149 * 118.49892 * 162.84094 * 22 21 20 24 24 C 1.37973 * 120.21528 * 179.81666 * 23 22 21 25 25 C 1.38289 * 119.95781 * 359.97438 * 24 23 22 26 26 C 1.38107 * 119.98401 * 0.07473 * 25 24 23 27 27 C 1.38373 * 121.80845 * 342.77149 * 22 21 20 28 28 C 1.46843 * 111.20335 * 298.25948 * 12 11 10 29 29 C 1.53033 * 109.52443 * 61.74089 * 28 12 11 30 30 H 0.97004 * 119.99703 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.52422 * 300.12349 * 9 7 2 32 32 H 1.08999 * 109.50393 * 62.43400 * 10 9 7 33 33 H 1.09003 * 109.53855 * 302.33775 * 10 9 7 34 34 H 1.08997 * 109.45760 * 299.16516 * 11 10 9 35 35 H 1.09000 * 109.45319 * 179.19391 * 11 10 9 36 36 H 1.08999 * 109.47186 * 173.61065 * 13 12 11 37 37 H 1.09000 * 109.46941 * 53.61104 * 13 12 11 38 38 H 0.96999 * 120.00160 * 0.02562 * 16 14 13 39 39 H 1.09004 * 109.70086 * 287.98469 * 19 17 16 40 40 H 1.09001 * 109.69688 * 48.53768 * 19 17 16 41 41 H 1.09004 * 109.68433 * 175.57027 * 20 19 17 42 42 H 1.09000 * 109.67848 * 55.02488 * 20 19 17 43 43 H 1.07996 * 119.89451 * 359.84134 * 23 22 21 44 44 H 1.07993 * 120.02341 * 179.97438 * 24 23 22 45 45 H 1.07997 * 120.01129 * 180.02562 * 25 24 23 46 46 H 1.07998 * 119.84457 * 180.02562 * 26 25 24 47 47 H 1.08995 * 109.46316 * 181.76109 * 28 12 11 48 48 H 1.09005 * 109.45730 * 301.72765 * 28 12 11 49 49 H 1.08993 * 109.50757 * 180.88159 * 29 28 12 50 50 H 1.09002 * 109.50193 * 60.76596 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2450 -3.6639 -0.0005 11 6 1.4751 -4.9852 -0.0604 12 7 0.6532 -5.0195 -1.2769 13 6 0.0069 -6.3287 -1.4387 14 6 1.0568 -7.3791 -1.6943 15 8 2.2146 -7.0538 -1.8506 16 7 0.7091 -8.6801 -1.7491 17 6 1.7296 -9.7012 -1.9981 18 1 2.6643 -9.4021 -1.5240 19 6 1.2665 -11.0376 -1.4129 20 6 2.1962 -12.1403 -1.9352 21 8 2.0316 -12.2354 -3.3507 22 6 2.0872 -11.0874 -4.0748 23 6 2.2930 -11.1779 -5.4480 24 6 2.3518 -10.0346 -6.2182 25 6 2.2053 -8.7940 -5.6249 26 6 2.0020 -8.7004 -4.2621 27 6 1.9440 -9.8445 -3.4836 28 6 -0.3405 -3.9383 -1.2771 29 6 0.3752 -2.5859 -1.2535 30 1 -0.4850 0.8401 0.0004 31 1 0.6227 -2.5570 0.8883 32 1 2.8429 -3.6320 0.9103 33 1 2.8996 -3.5845 -0.8685 34 1 0.8315 -5.0704 0.8152 35 1 2.1805 -5.8160 -0.0750 36 1 -0.6829 -6.2916 -2.2819 37 1 -0.5424 -6.5774 -0.5307 38 1 -0.2170 -8.9403 -1.6245 39 1 1.3169 -10.9994 -0.3247 40 1 0.2425 -11.2408 -1.7262 41 1 1.9353 -13.0912 -1.4705 42 1 3.2309 -11.8890 -1.7020 43 1 2.4068 -12.1461 -5.9126 44 1 2.5121 -10.1084 -7.2836 45 1 2.2508 -7.8986 -6.2269 46 1 1.8874 -7.7305 -3.8012 47 1 -0.9538 -4.0091 -2.1753 48 1 -0.9755 -4.0287 -0.3958 49 1 -0.3627 -1.7839 -1.2379 50 1 0.9998 -2.4891 -2.1415 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541953026.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:28 Heat of formation + Delta-G solvation = -63.912924 kcal Electronic energy + Delta-G solvation = -30409.905165 eV Core-core repulsion = 26401.024302 eV Total energy + Delta-G solvation = -4008.880863 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.02671 -40.76813 -39.29105 -38.40976 -36.61844 -35.63247 -33.52480 -32.88552 -31.56205 -31.43675 -31.13827 -29.12994 -26.99831 -25.70525 -24.64705 -23.86669 -23.44139 -23.05963 -21.51725 -21.05116 -20.37217 -18.84519 -18.44670 -18.11685 -17.62292 -17.44679 -17.00395 -16.63448 -16.38996 -16.08016 -15.88540 -15.46522 -15.28387 -15.11618 -14.78406 -14.67948 -14.43274 -14.27594 -14.16486 -14.09849 -13.79844 -13.45298 -13.04697 -12.96980 -12.94667 -12.82867 -12.62378 -12.41780 -12.27806 -12.22843 -12.02277 -11.88401 -11.77480 -11.63762 -11.38428 -11.03369 -10.68072 -10.63577 -10.36699 -10.17340 -9.80099 -9.17372 -9.15624 -8.08028 -6.20632 0.29725 0.43824 1.40709 1.42244 1.49839 1.63643 2.00043 2.35609 2.43943 2.81067 3.08999 3.18640 3.52076 3.61804 3.75865 3.80413 4.03696 4.16899 4.18062 4.20862 4.24735 4.31433 4.38379 4.40784 4.50360 4.50886 4.54519 4.60060 4.60891 4.66739 4.75880 4.91074 4.92876 4.93960 4.96291 5.06015 5.12501 5.21605 5.30706 5.33099 5.37266 5.52755 5.54795 5.62096 5.63188 5.81829 5.98855 6.01185 6.19839 6.29225 6.42218 6.45629 6.58823 6.89048 7.29560 7.46347 8.96430 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021838 B = 0.002205 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.865830 B =12696.208255 C =13229.640092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.015 3.985 3 Si 0.952 3.048 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.045 0.955 9 C 0.046 3.954 10 C -0.096 4.096 11 C 0.072 3.928 12 N -0.534 5.534 13 C 0.035 3.965 14 C 0.516 3.484 15 O -0.552 6.552 16 N -0.710 5.710 17 C 0.191 3.809 18 H 0.078 0.922 19 C -0.156 4.156 20 C 0.059 3.941 21 O -0.325 6.325 22 C 0.129 3.871 23 C -0.163 4.163 24 C -0.081 4.081 25 C -0.169 4.169 26 C -0.089 4.089 27 C -0.186 4.186 28 C 0.071 3.929 29 C -0.096 4.096 30 H 0.261 0.739 31 H -0.007 1.007 32 H 0.047 0.953 33 H 0.039 0.961 34 H 0.025 0.975 35 H 0.074 0.926 36 H 0.124 0.876 37 H 0.083 0.917 38 H 0.417 0.583 39 H 0.113 0.887 40 H 0.094 0.906 41 H 0.144 0.856 42 H 0.067 0.933 43 H 0.147 0.853 44 H 0.154 0.846 45 H 0.128 0.872 46 H 0.114 0.886 47 H 0.082 0.918 48 H 0.027 0.973 49 H 0.067 0.933 50 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.352 -28.653 -6.499 29.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.184 4.184 3 Si 0.777 3.223 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.198 1.198 7 C -0.574 4.574 8 H 0.063 0.937 9 C 0.028 3.972 10 C -0.134 4.134 11 C -0.055 4.055 12 N -0.259 5.259 13 C -0.096 4.096 14 C 0.304 3.696 15 O -0.430 6.430 16 N -0.364 5.364 17 C 0.086 3.914 18 H 0.096 0.904 19 C -0.193 4.193 20 C -0.016 4.016 21 O -0.239 6.239 22 C 0.083 3.917 23 C -0.181 4.181 24 C -0.099 4.099 25 C -0.187 4.187 26 C -0.107 4.107 27 C -0.188 4.188 28 C -0.056 4.056 29 C -0.134 4.134 30 H 0.070 0.930 31 H 0.012 0.988 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.043 0.957 35 H 0.092 0.908 36 H 0.142 0.858 37 H 0.101 0.899 38 H 0.254 0.746 39 H 0.131 0.869 40 H 0.113 0.887 41 H 0.162 0.838 42 H 0.085 0.915 43 H 0.165 0.835 44 H 0.172 0.828 45 H 0.146 0.854 46 H 0.132 0.868 47 H 0.100 0.900 48 H 0.045 0.955 49 H 0.085 0.915 50 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -1.402 -28.402 -7.038 29.294 hybrid contribution -0.309 1.488 0.911 1.772 sum -1.711 -26.914 -6.126 27.655 Atomic orbital electron populations 1.69985 1.06925 1.27150 1.51379 1.25696 0.95759 1.02130 0.94805 0.85717 0.78522 0.79368 0.78670 1.20003 1.20558 1.19807 1.21536 0.92822 0.92466 1.50598 0.93672 1.18647 0.93059 0.92164 0.93351 1.21490 0.98074 0.94440 0.99432 1.21996 0.95995 0.98193 0.89351 1.61555 1.23381 1.02019 1.38973 1.22069 0.94947 0.88139 1.04405 1.20856 0.89823 0.83655 0.75309 1.90719 1.21578 1.81559 1.49107 1.45867 1.12270 1.04872 1.73394 1.19627 0.92669 0.88993 0.90126 0.90382 1.22483 1.01485 0.91938 1.03428 1.23245 0.99608 1.01662 0.77066 1.85980 1.87594 1.28861 1.21508 1.18837 0.96546 0.84510 0.91796 1.20881 1.05666 1.00483 0.91104 1.21259 0.96611 0.91016 1.00978 1.21302 1.03766 0.98878 0.94778 1.21303 0.96719 0.98250 0.94447 1.20310 1.08667 0.92652 0.97197 1.22079 0.92560 0.90883 1.00076 1.21422 0.99194 0.95040 0.97779 0.92968 0.98848 0.93410 0.94170 0.95655 0.90765 0.85797 0.89941 0.74608 0.86859 0.88716 0.83808 0.91459 0.83540 0.82806 0.85378 0.86831 0.89978 0.95456 0.91467 0.95640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.39 11.37 21.45 0.24 -53.15 16 2 C 0.01 0.84 5.31 84.65 0.45 1.29 16 3 Si 0.95 44.94 29.54 68.60 2.03 46.97 16 4 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.54 -31.06 8.56 25.60 0.22 -30.84 16 8 H 0.04 2.61 7.74 -2.91 -0.02 2.59 16 9 C 0.05 2.43 2.16 -11.46 -0.02 2.41 16 10 C -0.10 -4.43 5.32 30.65 0.16 -4.27 16 11 C 0.07 2.76 5.12 86.33 0.44 3.20 16 12 N -0.53 -18.88 4.35 -900.94 -3.92 -22.80 16 13 C 0.04 0.86 5.45 85.56 0.47 1.33 16 14 C 0.52 13.27 5.92 87.66 0.52 13.79 16 15 O -0.55 -19.43 12.64 -3.03 -0.04 -19.47 16 16 N -0.71 -12.54 4.86 -445.90 -2.17 -14.71 16 17 C 0.19 3.52 2.70 44.29 0.12 3.64 16 18 H 0.08 1.81 7.57 -2.39 -0.02 1.79 16 19 C -0.16 -1.57 5.67 30.75 0.17 -1.39 16 20 C 0.06 0.61 7.03 72.12 0.51 1.12 16 21 O -0.33 -5.57 10.27 -91.81 -0.94 -6.51 16 22 C 0.13 2.63 6.47 22.52 0.15 2.78 16 23 C -0.16 -3.03 9.94 22.43 0.22 -2.80 16 24 C -0.08 -1.47 10.04 22.22 0.22 -1.25 16 25 C -0.17 -3.82 10.04 22.25 0.22 -3.59 16 26 C -0.09 -2.31 9.08 22.30 0.20 -2.11 16 27 C -0.19 -4.15 5.56 -19.75 -0.11 -4.26 16 28 C 0.07 2.68 5.46 86.33 0.47 3.16 16 29 C -0.10 -4.69 5.12 30.65 0.16 -4.54 16 30 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 31 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 32 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.07 2.79 6.06 -2.39 -0.01 2.77 16 36 H 0.12 2.47 7.98 -2.39 -0.02 2.45 16 37 H 0.08 1.64 8.12 -2.39 -0.02 1.62 16 38 H 0.42 4.52 8.58 -92.71 -0.80 3.73 16 39 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.09 0.80 8.11 -2.39 -0.02 0.78 16 41 H 0.14 0.58 8.14 -2.38 -0.02 0.56 16 42 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 44 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 45 H 0.13 2.64 8.06 -2.91 -0.02 2.61 16 46 H 0.11 3.49 4.70 -2.91 -0.01 3.47 16 47 H 0.08 2.67 8.01 -2.39 -0.02 2.65 16 48 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 49 H 0.07 3.63 6.18 -2.39 -0.01 3.61 16 50 H 0.02 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -73.47 388.10 -0.07 -73.54 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.15 Total: 18.47 kcal Atomic # 6 Polarization: -26.92 SS G_CDS: 4.57 Total: -22.35 kcal Atomic # 7 Polarization: -84.82 SS G_CDS: -5.84 Total: -90.66 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -0.98 Total: -25.98 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -73.47 -0.07 -73.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541953026.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.630 kcal (2) G-P(sol) polarization free energy of solvation -73.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds