Wall clock time and date at job start Wed Apr 1 2020 03:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99551 * 2 1 4 4 H 1.48500 * 109.46967 * 270.00353 * 3 2 1 5 5 H 1.48502 * 109.47094 * 30.00211 * 3 2 1 6 6 H 1.48496 * 109.47013 * 150.00376 * 3 2 1 7 7 C 1.37877 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99729 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99954 * 359.97438 * 7 2 1 10 10 C 1.53036 * 109.45796 * 180.02562 * 9 7 2 11 11 C 1.53189 * 109.31189 * 178.62589 * 10 9 7 12 12 N 1.46925 * 108.77382 * 54.63674 * 11 10 9 13 13 C 1.34781 * 120.63155 * 126.37044 * 12 11 10 14 14 O 1.21347 * 120.00163 * 1.94562 * 13 12 11 15 15 C 1.49449 * 119.99904 * 181.95575 * 13 12 11 16 16 O 1.21346 * 119.99962 * 353.05908 * 15 13 12 17 17 N 1.34774 * 120.00131 * 173.07140 * 15 13 12 18 18 C 1.46499 * 120.00501 * 179.71948 * 17 15 13 19 19 C 1.52995 * 109.47502 * 180.26885 * 18 17 15 20 20 C 1.52999 * 109.47092 * 179.97438 * 19 18 17 21 21 C 1.50700 * 109.47244 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00317 * 269.73328 * 21 20 19 23 23 C 1.38235 * 119.99779 * 179.76346 * 22 21 20 24 24 C 1.38241 * 120.00337 * 0.50726 * 23 22 21 25 25 C 1.38241 * 119.99591 * 359.74532 * 24 23 22 26 26 C 1.38235 * 119.99836 * 359.97438 * 25 24 23 27 27 C 1.46924 * 118.73764 * 306.63885 * 12 11 10 28 28 C 1.52765 * 109.00767 * 53.31607 * 27 12 11 29 29 H 0.96996 * 120.00116 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.45796 * 299.96863 * 9 7 2 31 31 H 1.09001 * 109.49983 * 58.67268 * 10 9 7 32 32 H 1.09003 * 109.52523 * 298.59527 * 10 9 7 33 33 H 1.08996 * 109.59077 * 294.84611 * 11 10 9 34 34 H 1.09006 * 109.70238 * 174.48609 * 11 10 9 35 35 H 0.97002 * 120.00114 * 359.97438 * 17 15 13 36 36 H 1.09003 * 109.47171 * 300.27800 * 18 17 15 37 37 H 1.09007 * 109.46740 * 60.27364 * 18 17 15 38 38 H 1.08998 * 109.47397 * 300.00228 * 19 18 17 39 39 H 1.09007 * 109.46732 * 60.00474 * 19 18 17 40 40 H 1.08998 * 109.47374 * 300.00472 * 20 19 18 41 41 H 1.09007 * 109.46757 * 60.00720 * 20 19 18 42 42 H 1.07992 * 120.00173 * 359.97438 * 22 21 20 43 43 H 1.07999 * 120.00338 * 180.22727 * 23 22 21 44 44 H 1.08000 * 120.00288 * 179.72232 * 24 23 22 45 45 H 1.07996 * 119.99512 * 179.97438 * 25 24 23 46 46 H 1.07999 * 119.99669 * 179.97438 * 26 25 24 47 47 H 1.09000 * 109.58549 * 173.14264 * 27 12 11 48 48 H 1.09000 * 109.59086 * 293.57106 * 27 12 11 49 49 H 1.08994 * 109.56421 * 185.55416 * 28 27 12 50 50 H 1.08994 * 109.38600 * 65.51203 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4964 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2459 -3.6621 -0.0005 11 6 1.4769 -4.9866 0.0341 12 7 0.5227 -5.0087 -1.0829 13 6 0.5126 -6.0344 -1.9571 14 8 1.2724 -6.9684 -1.8057 15 6 -0.4344 -6.0215 -3.1133 16 8 -1.2785 -5.1538 -3.1964 17 7 -0.3510 -6.9738 -4.0633 18 6 -1.2832 -6.9647 -5.1934 19 6 -0.9790 -8.1475 -6.1151 20 6 -1.9530 -8.1383 -7.2949 21 6 -1.6530 -9.3029 -8.2031 22 6 -0.7582 -9.1535 -9.2461 23 6 -0.4794 -10.2232 -10.0761 24 6 -1.1032 -11.4395 -9.8695 25 6 -2.0020 -11.5874 -8.8295 26 6 -2.2764 -10.5192 -7.9960 27 6 -0.4162 -3.8885 -1.2322 28 6 0.3703 -2.5790 -1.2495 29 1 -0.4850 0.8400 0.0004 30 1 0.6253 -2.5571 0.8901 31 1 2.8884 -3.5914 0.8772 32 1 2.8564 -3.6193 -0.9026 33 1 0.9374 -5.0713 0.9774 34 1 2.1739 -5.8189 -0.0642 35 1 0.3239 -7.6674 -3.9970 36 1 -2.3048 -7.0465 -4.8224 37 1 -1.1718 -6.0334 -5.7488 38 1 0.0426 -8.0656 -6.4861 39 1 -1.0904 -9.0788 -5.5597 40 1 -2.9744 -8.2204 -6.9235 41 1 -1.8420 -7.2070 -7.8504 42 1 -0.2745 -8.2021 -9.4105 43 1 0.2224 -10.1076 -10.8888 44 1 -0.8888 -12.2739 -10.5207 45 1 -2.4896 -12.5374 -8.6683 46 1 -2.9788 -10.6347 -7.1838 47 1 -0.9663 -3.9950 -2.1671 48 1 -1.1133 -3.8818 -0.3943 49 1 -0.3222 -1.7374 -1.2607 50 1 0.9979 -2.5456 -2.1400 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543838985.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:52 Heat of formation + Delta-G solvation = -46.009683 kcal Electronic energy + Delta-G solvation = -28919.904326 eV Core-core repulsion = 24911.799805 eV Total energy + Delta-G solvation = -4008.104520 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.67914 -39.69524 -38.54220 -37.03099 -36.18836 -34.00059 -33.33512 -31.25631 -31.20347 -30.56737 -30.04653 -27.08235 -26.16384 -24.28602 -22.94771 -22.71051 -22.32918 -21.77662 -21.28868 -20.18072 -18.87051 -17.28746 -17.18741 -16.76346 -16.34927 -16.26331 -15.75035 -15.62875 -15.35628 -14.87163 -14.70122 -14.52132 -13.95259 -13.82234 -13.72130 -13.67516 -13.38725 -13.01472 -12.89436 -12.78885 -12.52414 -12.39336 -12.27689 -12.00105 -11.71596 -11.52192 -11.39389 -11.24254 -11.11363 -10.93486 -10.82167 -10.57500 -10.34304 -10.05809 -9.69579 -9.34547 -9.29174 -9.21952 -9.16288 -9.06948 -8.50049 -8.29890 -8.07121 -5.99207 -4.05778 0.96945 1.02922 1.62888 2.51590 3.30233 3.37200 3.39954 3.40140 3.43604 3.78024 4.24546 4.41262 4.43317 4.53269 4.62869 4.67211 4.73574 4.84287 4.88604 5.05350 5.14282 5.26211 5.30390 5.30551 5.44614 5.63186 5.65088 5.66547 5.74145 5.78853 5.86000 5.91431 6.07111 6.09571 6.13226 6.15041 6.25930 6.26769 6.48398 6.63191 6.63625 6.75666 6.82962 6.99621 7.12534 7.18338 7.32876 7.68337 7.80970 7.92373 7.98325 8.09988 8.26773 8.43708 8.97432 9.58968 11.06175 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020248 B = 0.001717 C = 0.001659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.512662 B =16300.011826 C =16868.702959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.045 3.955 10 C -0.122 4.122 11 C 0.106 3.894 12 N -0.558 5.558 13 C 0.499 3.501 14 O -0.547 6.547 15 C 0.511 3.489 16 O -0.502 6.502 17 N -0.705 5.705 18 C 0.116 3.884 19 C -0.126 4.126 20 C -0.078 4.078 21 C -0.080 4.080 22 C -0.117 4.117 23 C -0.119 4.119 24 C -0.126 4.126 25 C -0.119 4.119 26 C -0.117 4.117 27 C 0.044 3.956 28 C -0.120 4.120 29 H 0.260 0.740 30 H 0.027 0.973 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.412 0.588 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.121 0.879 46 H 0.122 0.878 47 H 0.142 0.858 48 H 0.059 0.941 49 H 0.105 0.895 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.061 -21.201 -17.109 27.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.551 4.551 8 H 0.072 0.928 9 C 0.027 3.973 10 C -0.160 4.160 11 C -0.016 4.016 12 N -0.289 5.289 13 C 0.280 3.720 14 O -0.427 6.427 15 C 0.293 3.707 16 O -0.378 6.378 17 N -0.358 5.358 18 C -0.007 4.007 19 C -0.164 4.164 20 C -0.116 4.116 21 C -0.081 4.081 22 C -0.135 4.135 23 C -0.137 4.137 24 C -0.144 4.144 25 C -0.137 4.137 26 C -0.135 4.135 27 C -0.076 4.076 28 C -0.159 4.159 29 H 0.070 0.930 30 H 0.046 0.954 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.248 0.752 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.140 0.860 47 H 0.158 0.842 48 H 0.077 0.923 49 H 0.123 0.877 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.435 -20.902 -17.061 27.523 hybrid contribution 0.830 0.676 0.076 1.073 sum -4.605 -20.226 -16.985 26.810 Atomic orbital electron populations 1.69848 1.05825 1.26436 1.50755 1.24965 0.94863 0.99028 0.95122 0.86619 0.79872 0.83591 0.78048 1.20770 1.21254 1.20001 1.21193 0.92882 0.90604 1.50450 0.92750 1.18691 0.92691 0.91598 0.94355 1.22011 0.98922 0.93994 1.01105 1.21895 0.91779 1.00110 0.87796 1.48265 1.34850 1.20103 1.25722 1.19837 0.84477 0.83733 0.83902 1.90691 1.41794 1.34913 1.75316 1.20419 0.84904 0.81725 0.83638 1.90382 1.36697 1.34521 1.76194 1.45783 1.36381 1.30101 1.23581 1.21488 0.93476 0.99218 0.86541 1.21784 1.00441 0.98315 0.95860 1.20519 0.99808 0.96442 0.94856 1.19873 0.96861 0.95166 0.96155 1.21105 0.98044 0.99110 0.95202 1.21173 0.99777 0.93227 0.99506 1.21172 0.97394 0.97618 0.98259 1.21166 0.98268 0.98800 0.95489 1.21093 1.00110 0.92696 0.99603 1.23449 0.91876 0.86052 1.06231 1.21900 0.99951 0.95102 0.98933 0.92973 0.95448 0.91880 0.92912 0.91529 0.90139 0.75210 0.90815 0.90724 0.90773 0.90822 0.90379 0.90335 0.85963 0.86102 0.86230 0.86127 0.86012 0.84192 0.92252 0.87686 0.94630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.99 11.31 55.43 0.63 -24.36 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 3 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.51 -13.92 8.56 -34.44 -0.29 -14.21 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.05 1.10 2.07 -91.73 -0.19 0.91 16 10 C -0.12 -2.53 5.30 -26.61 -0.14 -2.67 16 11 C 0.11 1.95 6.43 -3.71 -0.02 1.93 16 12 N -0.56 -10.58 2.98 -173.54 -0.52 -11.09 16 13 C 0.50 8.82 7.76 -11.58 -0.09 8.73 16 14 O -0.55 -10.11 15.91 5.50 0.09 -10.03 16 15 C 0.51 7.93 7.80 -11.59 -0.09 7.84 16 16 O -0.50 -8.73 13.02 5.50 0.07 -8.66 16 17 N -0.70 -8.12 5.55 -60.73 -0.34 -8.46 16 18 C 0.12 1.03 5.67 -4.05 -0.02 1.01 16 19 C -0.13 -0.83 5.31 -26.73 -0.14 -0.97 16 20 C -0.08 -0.47 5.35 -27.88 -0.15 -0.62 16 21 C -0.08 -0.57 5.13 -104.62 -0.54 -1.11 16 22 C -0.12 -0.83 9.70 -39.58 -0.38 -1.21 16 23 C -0.12 -0.80 10.05 -39.58 -0.40 -1.20 16 24 C -0.13 -0.83 10.05 -39.58 -0.40 -1.23 16 25 C -0.12 -0.79 10.05 -39.58 -0.40 -1.19 16 26 C -0.12 -0.81 9.70 -39.58 -0.38 -1.20 16 27 C 0.04 0.88 6.20 -3.93 -0.02 0.86 16 28 C -0.12 -2.82 5.14 -26.83 -0.14 -2.96 16 29 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.08 1.41 7.01 -51.93 -0.36 1.05 16 35 H 0.41 4.24 7.96 -40.82 -0.33 3.92 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.42 8.09 -51.93 -0.42 0.00 16 41 H 0.08 0.44 8.08 -51.93 -0.42 0.02 16 42 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 43 H 0.12 0.61 8.06 -52.49 -0.42 0.18 16 44 H 0.12 0.57 8.06 -52.49 -0.42 0.14 16 45 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 46 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 47 H 0.14 2.79 3.79 -56.97 -0.22 2.57 16 48 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 49 H 0.11 2.74 6.03 -51.93 -0.31 2.43 16 50 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 403.91 15.07 6.09 6.09 Total: -1.00 -30.81 403.91 -10.84 -41.65 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -7.94 Total: 4.43 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -3.90 Total: -5.72 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: -0.23 Total: -43.91 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: 0.16 Total: -18.68 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -30.81 -10.84 -41.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543838985.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.356 kcal (2) G-P(sol) polarization free energy of solvation -30.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds