Wall clock time and date at job start Wed Apr 1 2020 03:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99551 * 2 1 4 4 H 1.48500 * 109.46967 * 270.00353 * 3 2 1 5 5 H 1.48502 * 109.47094 * 30.00211 * 3 2 1 6 6 H 1.48496 * 109.47013 * 150.00376 * 3 2 1 7 7 C 1.37877 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99729 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99954 * 359.97438 * 7 2 1 10 10 C 1.53036 * 109.45796 * 180.02562 * 9 7 2 11 11 C 1.53189 * 109.31189 * 178.62589 * 10 9 7 12 12 N 1.46925 * 108.77382 * 54.63674 * 11 10 9 13 13 C 1.34781 * 120.63155 * 126.37044 * 12 11 10 14 14 O 1.21347 * 120.00163 * 1.94562 * 13 12 11 15 15 C 1.49449 * 119.99904 * 181.95575 * 13 12 11 16 16 O 1.21346 * 119.99962 * 353.05908 * 15 13 12 17 17 N 1.34774 * 120.00131 * 173.07140 * 15 13 12 18 18 C 1.46499 * 120.00501 * 179.71948 * 17 15 13 19 19 C 1.52995 * 109.47502 * 180.26885 * 18 17 15 20 20 C 1.52999 * 109.47092 * 179.97438 * 19 18 17 21 21 C 1.50700 * 109.47244 * 179.97438 * 20 19 18 22 22 C 1.38234 * 120.00317 * 269.73328 * 21 20 19 23 23 C 1.38235 * 119.99779 * 179.76346 * 22 21 20 24 24 C 1.38241 * 120.00337 * 0.50726 * 23 22 21 25 25 C 1.38241 * 119.99591 * 359.74532 * 24 23 22 26 26 C 1.38235 * 119.99836 * 359.97438 * 25 24 23 27 27 C 1.46924 * 118.73764 * 306.63885 * 12 11 10 28 28 C 1.52765 * 109.00767 * 53.31607 * 27 12 11 29 29 H 0.96996 * 120.00116 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.45796 * 299.96863 * 9 7 2 31 31 H 1.09001 * 109.49983 * 58.67268 * 10 9 7 32 32 H 1.09003 * 109.52523 * 298.59527 * 10 9 7 33 33 H 1.08996 * 109.59077 * 294.84611 * 11 10 9 34 34 H 1.09006 * 109.70238 * 174.48609 * 11 10 9 35 35 H 0.97002 * 120.00114 * 359.97438 * 17 15 13 36 36 H 1.09003 * 109.47171 * 300.27800 * 18 17 15 37 37 H 1.09007 * 109.46740 * 60.27364 * 18 17 15 38 38 H 1.08998 * 109.47397 * 300.00228 * 19 18 17 39 39 H 1.09007 * 109.46732 * 60.00474 * 19 18 17 40 40 H 1.08998 * 109.47374 * 300.00472 * 20 19 18 41 41 H 1.09007 * 109.46757 * 60.00720 * 20 19 18 42 42 H 1.07992 * 120.00173 * 359.97438 * 22 21 20 43 43 H 1.07999 * 120.00338 * 180.22727 * 23 22 21 44 44 H 1.08000 * 120.00288 * 179.72232 * 24 23 22 45 45 H 1.07996 * 119.99512 * 179.97438 * 25 24 23 46 46 H 1.07999 * 119.99669 * 179.97438 * 26 25 24 47 47 H 1.09000 * 109.58549 * 173.14264 * 27 12 11 48 48 H 1.09000 * 109.59086 * 293.57106 * 27 12 11 49 49 H 1.08994 * 109.56421 * 185.55416 * 28 27 12 50 50 H 1.08994 * 109.38600 * 65.51203 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4964 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2459 -3.6621 -0.0005 11 6 1.4769 -4.9866 0.0341 12 7 0.5227 -5.0087 -1.0829 13 6 0.5126 -6.0344 -1.9571 14 8 1.2724 -6.9684 -1.8057 15 6 -0.4344 -6.0215 -3.1133 16 8 -1.2785 -5.1538 -3.1964 17 7 -0.3510 -6.9738 -4.0633 18 6 -1.2832 -6.9647 -5.1934 19 6 -0.9790 -8.1475 -6.1151 20 6 -1.9530 -8.1383 -7.2949 21 6 -1.6530 -9.3029 -8.2031 22 6 -0.7582 -9.1535 -9.2461 23 6 -0.4794 -10.2232 -10.0761 24 6 -1.1032 -11.4395 -9.8695 25 6 -2.0020 -11.5874 -8.8295 26 6 -2.2764 -10.5192 -7.9960 27 6 -0.4162 -3.8885 -1.2322 28 6 0.3703 -2.5790 -1.2495 29 1 -0.4850 0.8400 0.0004 30 1 0.6253 -2.5571 0.8901 31 1 2.8884 -3.5914 0.8772 32 1 2.8564 -3.6193 -0.9026 33 1 0.9374 -5.0713 0.9774 34 1 2.1739 -5.8189 -0.0642 35 1 0.3239 -7.6674 -3.9970 36 1 -2.3048 -7.0465 -4.8224 37 1 -1.1718 -6.0334 -5.7488 38 1 0.0426 -8.0656 -6.4861 39 1 -1.0904 -9.0788 -5.5597 40 1 -2.9744 -8.2204 -6.9235 41 1 -1.8420 -7.2070 -7.8504 42 1 -0.2745 -8.2021 -9.4105 43 1 0.2224 -10.1076 -10.8888 44 1 -0.8888 -12.2739 -10.5207 45 1 -2.4896 -12.5374 -8.6683 46 1 -2.9788 -10.6347 -7.1838 47 1 -0.9663 -3.9950 -2.1671 48 1 -1.1133 -3.8818 -0.3943 49 1 -0.3222 -1.7374 -1.2607 50 1 0.9979 -2.5456 -2.1400 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543838985.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:51 Heat of formation + Delta-G solvation = -62.627307 kcal Electronic energy + Delta-G solvation = -28920.624920 eV Core-core repulsion = 24911.799805 eV Total energy + Delta-G solvation = -4008.825114 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.01451 -40.21156 -39.84659 -38.60463 -37.09270 -35.38790 -34.54978 -33.02137 -31.76197 -31.72074 -31.23003 -28.50119 -27.37041 -25.65028 -24.18592 -23.72275 -23.41783 -22.84822 -21.98199 -21.43576 -20.44538 -18.70439 -18.34407 -18.08915 -17.61747 -17.27227 -16.87380 -16.49098 -16.47338 -16.18472 -15.73421 -15.69418 -15.32963 -14.96411 -14.75075 -14.64663 -14.43905 -14.28579 -14.21165 -13.96888 -13.83639 -13.41111 -13.27164 -13.19283 -12.91689 -12.81219 -12.55339 -12.51198 -12.28692 -12.14247 -12.02569 -11.92770 -11.73918 -11.60362 -11.49506 -11.05757 -11.00861 -10.45736 -10.34810 -9.94519 -9.77830 -9.69745 -9.55853 -8.07124 -6.21251 0.31154 0.47958 0.54321 1.30434 1.41539 1.42837 1.52365 2.10079 2.44104 2.48672 2.92300 3.19169 3.26709 3.68443 3.93686 4.11389 4.14806 4.17809 4.25490 4.26931 4.29539 4.34689 4.36629 4.50313 4.52603 4.56004 4.64964 4.70881 4.77839 4.79813 4.81427 4.88660 4.95169 5.11494 5.13866 5.18531 5.19589 5.24881 5.29965 5.37385 5.39315 5.53798 5.62496 5.63157 5.67744 5.77349 5.96221 6.01837 6.11502 6.17705 6.29154 6.38537 6.69898 6.88752 6.92918 7.46525 8.96484 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020248 B = 0.001717 C = 0.001659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.512662 B =16300.011826 C =16868.702959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.014 3.986 3 Si 0.952 3.048 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.535 4.535 8 H 0.051 0.949 9 C 0.042 3.958 10 C -0.113 4.113 11 C 0.111 3.889 12 N -0.568 5.568 13 C 0.499 3.501 14 O -0.552 6.552 15 C 0.511 3.489 16 O -0.524 6.524 17 N -0.684 5.684 18 C 0.114 3.886 19 C -0.114 4.114 20 C -0.074 4.074 21 C -0.090 4.090 22 C -0.131 4.131 23 C -0.130 4.130 24 C -0.137 4.137 25 C -0.130 4.130 26 C -0.129 4.129 27 C 0.059 3.941 28 C -0.110 4.110 29 H 0.261 0.739 30 H 0.003 0.997 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.420 0.580 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.130 0.870 43 H 0.134 0.866 44 H 0.135 0.865 45 H 0.136 0.864 46 H 0.133 0.867 47 H 0.150 0.850 48 H 0.057 0.943 49 H 0.076 0.924 50 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.765 -22.512 -18.046 29.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.184 4.184 3 Si 0.778 3.222 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.573 4.573 8 H 0.069 0.931 9 C 0.023 3.977 10 C -0.151 4.151 11 C -0.011 4.011 12 N -0.299 5.299 13 C 0.282 3.718 14 O -0.432 6.432 15 C 0.293 3.707 16 O -0.403 6.403 17 N -0.337 5.337 18 C -0.008 4.008 19 C -0.152 4.152 20 C -0.112 4.112 21 C -0.090 4.090 22 C -0.148 4.148 23 C -0.148 4.148 24 C -0.155 4.155 25 C -0.148 4.148 26 C -0.147 4.147 27 C -0.061 4.061 28 C -0.149 4.149 29 H 0.070 0.930 30 H 0.021 0.979 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.257 0.743 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.148 0.852 43 H 0.152 0.848 44 H 0.153 0.847 45 H 0.153 0.847 46 H 0.151 0.849 47 H 0.166 0.834 48 H 0.075 0.925 49 H 0.094 0.906 50 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -5.121 -22.264 -18.022 29.099 hybrid contribution 0.748 1.000 0.311 1.287 sum -4.372 -21.264 -17.711 28.017 Atomic orbital electron populations 1.69979 1.06995 1.27127 1.51190 1.25702 0.95687 1.02196 0.94857 0.85654 0.78784 0.79706 0.78072 1.20415 1.20868 1.19422 1.21558 0.92992 0.92153 1.50603 0.93103 1.18665 0.93149 0.92318 0.93566 1.21853 0.98216 0.93873 1.01153 1.21848 0.91925 0.98976 0.88356 1.48245 1.34979 1.20268 1.26447 1.20208 0.84520 0.83053 0.84007 1.90683 1.42121 1.34938 1.75489 1.20052 0.84399 0.82471 0.83821 1.90345 1.37557 1.35731 1.76634 1.45779 1.36308 1.28710 1.22887 1.21690 0.93006 1.00280 0.85824 1.21686 1.00699 0.97306 0.95506 1.20489 0.99960 0.96333 0.94439 1.20012 0.97037 0.95530 0.96433 1.21324 0.98359 0.99681 0.95486 1.21438 1.00129 0.93334 0.99932 1.21456 0.97306 0.98154 0.98560 1.21446 0.98363 0.99497 0.95454 1.21328 1.00435 0.92817 1.00108 1.23216 0.91409 0.84808 1.06700 1.21670 0.99228 0.96122 0.97856 0.92977 0.97935 0.90987 0.93627 0.90483 0.88735 0.74263 0.90426 0.90858 0.90607 0.90308 0.89685 0.89970 0.85203 0.84808 0.84703 0.84657 0.84949 0.83408 0.92494 0.90588 0.95866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.28 11.31 21.45 0.24 -52.04 16 2 C 0.01 0.79 5.30 84.65 0.45 1.24 16 3 Si 0.95 43.64 29.54 68.60 2.03 45.66 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 7 C -0.53 -29.44 8.56 25.60 0.22 -29.22 16 8 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 9 C 0.04 2.07 2.07 -11.51 -0.02 2.05 16 10 C -0.11 -4.64 5.30 30.67 0.16 -4.48 16 11 C 0.11 3.95 6.43 86.36 0.56 4.51 16 12 N -0.57 -21.07 2.98 -821.31 -2.45 -23.52 16 13 C 0.50 16.96 7.76 87.27 0.68 17.64 16 14 O -0.55 -19.34 15.91 -3.24 -0.05 -19.39 16 15 C 0.51 15.15 7.80 87.27 0.68 15.83 16 16 O -0.52 -17.74 13.02 -3.23 -0.04 -17.78 16 17 N -0.68 -14.43 5.55 -464.42 -2.58 -17.00 16 18 C 0.11 1.81 5.67 86.38 0.49 2.30 16 19 C -0.11 -1.25 5.31 30.59 0.16 -1.09 16 20 C -0.07 -0.76 5.35 29.85 0.16 -0.60 16 21 C -0.09 -1.15 5.13 -19.87 -0.10 -1.25 16 22 C -0.13 -1.70 9.70 22.27 0.22 -1.48 16 23 C -0.13 -1.62 10.05 22.27 0.22 -1.39 16 24 C -0.14 -1.63 10.05 22.27 0.22 -1.40 16 25 C -0.13 -1.55 10.05 22.27 0.22 -1.33 16 26 C -0.13 -1.61 9.70 22.27 0.22 -1.39 16 27 C 0.06 2.39 6.20 86.22 0.53 2.92 16 28 C -0.11 -5.29 5.14 30.53 0.16 -5.13 16 29 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 30 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 32 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.09 3.14 7.01 -2.38 -0.02 3.12 16 35 H 0.42 7.68 7.96 -92.71 -0.74 6.95 16 36 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.07 1.24 8.14 -2.38 -0.02 1.23 16 38 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 40 H 0.08 0.76 8.09 -2.39 -0.02 0.74 16 41 H 0.08 0.79 8.08 -2.38 -0.02 0.77 16 42 H 0.13 1.37 8.06 -2.91 -0.02 1.35 16 43 H 0.13 1.18 8.06 -2.91 -0.02 1.16 16 44 H 0.14 1.07 8.06 -2.91 -0.02 1.05 16 45 H 0.14 1.10 8.06 -2.91 -0.02 1.08 16 46 H 0.13 1.26 8.06 -2.91 -0.02 1.23 16 47 H 0.15 5.88 3.79 -82.29 -0.31 5.57 16 48 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 49 H 0.08 4.10 6.03 -2.39 -0.01 4.09 16 50 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -65.67 403.91 2.27 -63.40 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: -0.10 Total: 22.96 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: 5.23 Total: -2.29 kcal Atomic # 7 Polarization: -87.78 SS G_CDS: -4.78 Total: -92.56 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: -0.09 Total: -37.17 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -65.67 2.27 -63.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543838985.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.770 kcal (2) G-P(sol) polarization free energy of solvation -65.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds