Wall clock time and date at job start Wed Apr 1 2020 03:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86792 * 120.00282 * 2 1 4 4 H 1.48504 * 109.47354 * 270.00350 * 3 2 1 5 5 H 1.48503 * 109.46956 * 30.00283 * 3 2 1 6 6 H 1.48501 * 109.47378 * 150.00189 * 3 2 1 7 7 C 1.37883 * 119.99767 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99808 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00406 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47411 * 179.97438 * 9 7 2 11 11 C 1.53041 * 109.45910 * 174.99747 * 10 9 7 12 12 C 1.53189 * 109.30924 * 181.38358 * 11 10 9 13 13 N 1.46928 * 108.77778 * 305.36440 * 12 11 10 14 14 C 1.34771 * 120.63153 * 233.58875 * 13 12 11 15 15 O 1.21281 * 120.00209 * 359.97438 * 14 13 12 16 16 C 1.50695 * 120.00307 * 179.97438 * 14 13 12 17 17 C 1.52998 * 109.47898 * 179.97438 * 16 14 13 18 18 C 1.50697 * 109.47525 * 179.97438 * 17 16 14 19 19 C 1.37984 * 120.07203 * 96.13395 * 18 17 16 20 20 C 1.38335 * 120.14446 * 180.02562 * 19 18 17 21 21 C 1.38383 * 120.29021 * 359.97438 * 20 19 18 22 22 C 1.37936 * 120.14861 * 0.02562 * 21 20 19 23 23 C 1.39548 * 120.07500 * 276.17153 * 18 17 16 24 24 C 1.47850 * 120.14344 * 0.02562 * 23 18 17 25 25 N 1.34783 * 119.99758 * 185.94674 * 24 23 18 26 26 O 1.21548 * 120.00334 * 5.94656 * 24 23 18 27 27 C 1.46924 * 118.73671 * 53.86285 * 13 12 11 28 28 C 1.53041 * 109.45655 * 295.06675 * 10 9 7 29 29 H 0.97000 * 120.00474 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47061 * 59.99264 * 9 7 2 31 31 H 1.09007 * 109.46638 * 300.00040 * 9 7 2 32 32 H 1.09001 * 109.46082 * 55.02520 * 10 9 7 33 33 H 1.08997 * 109.49355 * 61.43431 * 11 10 9 34 34 H 1.09001 * 109.52497 * 301.35133 * 11 10 9 35 35 H 1.09000 * 109.58569 * 185.57667 * 12 11 10 36 36 H 1.08998 * 109.70601 * 65.22610 * 12 11 10 37 37 H 1.09006 * 109.47061 * 59.99569 * 16 14 13 38 38 H 1.09002 * 109.46931 * 300.00377 * 16 14 13 39 39 H 1.09006 * 109.46957 * 59.99700 * 17 16 14 40 40 H 1.09008 * 109.46929 * 300.00545 * 17 16 14 41 41 H 1.07999 * 119.92847 * 0.02562 * 19 18 17 42 42 H 1.07995 * 119.85519 * 180.27151 * 20 19 18 43 43 H 1.08001 * 119.92196 * 179.97438 * 21 20 19 44 44 H 1.07996 * 120.07728 * 180.02562 * 22 21 20 45 45 H 0.96998 * 120.00458 * 0.02562 * 25 24 23 46 46 H 0.97004 * 119.99445 * 179.97438 * 25 24 23 47 47 H 1.09000 * 109.59172 * 65.92751 * 27 13 12 48 48 H 1.09001 * 109.58726 * 186.35549 * 27 13 12 49 49 H 1.09003 * 109.49621 * 298.56696 * 28 10 9 50 50 H 1.08999 * 109.50120 * 58.66453 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4993 0.0005 10 6 2.2452 -3.6622 0.0005 11 6 1.4838 -4.9838 0.1264 12 6 2.4843 -6.1434 0.1608 13 7 3.3503 -6.0562 -1.0229 14 6 3.4920 -7.1114 -1.8492 15 8 2.9022 -8.1457 -1.6188 16 6 4.3835 -7.0062 -3.0597 17 6 4.3683 -8.3330 -3.8214 18 6 5.2593 -8.2275 -5.0321 19 6 6.5615 -8.6803 -4.9739 20 6 7.3808 -8.5837 -6.0843 21 6 6.9012 -8.0335 -7.2600 22 6 5.6015 -7.5770 -7.3315 23 6 4.7696 -7.6709 -6.2144 24 6 3.3759 -7.1823 -6.2835 25 7 2.8685 -6.7563 -7.4572 26 8 2.6876 -7.1649 -5.2818 27 6 4.0635 -4.7988 -1.2853 28 6 3.0411 -3.6524 -1.3066 29 1 -0.4851 0.8400 0.0004 30 1 0.6245 -2.5572 -0.8896 31 1 0.6239 -2.5567 0.8904 32 1 2.9289 -3.5554 0.8427 33 1 0.8181 -5.1029 -0.7284 34 1 0.8984 -4.9809 1.0458 35 1 1.9457 -7.0910 0.1506 36 1 3.0916 -6.0782 1.0635 37 1 5.4019 -6.7814 -2.7425 38 1 4.0213 -6.2096 -3.7095 39 1 3.3500 -8.5582 -4.1385 40 1 4.7308 -9.1293 -3.1712 41 1 6.9418 -9.1111 -4.0595 42 1 8.3979 -8.9436 -6.0349 43 1 7.5462 -7.9606 -8.1231 44 1 5.2282 -7.1482 -8.2497 45 1 3.4176 -6.7706 -8.2567 46 1 1.9540 -6.4362 -7.5026 47 1 4.7968 -4.6235 -0.4981 48 1 4.5673 -4.8589 -2.2500 49 1 2.3606 -3.7841 -2.1479 50 1 3.5645 -2.7016 -1.4067 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565602514.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:26 Heat of formation + Delta-G solvation = -68.260966 kcal Electronic energy + Delta-G solvation = -30130.846461 eV Core-core repulsion = 26121.777053 eV Total energy + Delta-G solvation = -4009.069408 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.73325 -39.74748 -38.40608 -37.24815 -34.69525 -33.90133 -33.51973 -32.10821 -31.24464 -30.91443 -29.73749 -27.93392 -25.46770 -24.36593 -23.84858 -22.72340 -21.96807 -21.37811 -20.72793 -19.60801 -18.43699 -18.24936 -17.08998 -16.93284 -16.25714 -15.94520 -15.68967 -15.57582 -15.34866 -15.02276 -14.77710 -14.51223 -13.92439 -13.76578 -13.67796 -13.39918 -13.25841 -13.21928 -12.77471 -12.71156 -12.40393 -12.25132 -12.05087 -11.81814 -11.66179 -11.39943 -11.14273 -11.05168 -10.92456 -10.72058 -10.64409 -10.41703 -10.05673 -9.99920 -9.77275 -9.66041 -9.43529 -9.36251 -9.19282 -9.04776 -8.92424 -8.33343 -8.19821 -5.97530 -3.99376 0.51091 0.96527 2.61909 2.95844 3.22171 3.31272 3.31763 3.38389 3.40919 3.53525 4.38139 4.42385 4.45533 4.46762 4.63515 4.91760 4.96189 5.05965 5.16019 5.21404 5.30318 5.37453 5.40443 5.49921 5.56992 5.59138 5.64338 5.66187 5.77760 5.82091 5.90714 5.92909 6.04967 6.08836 6.15912 6.19019 6.38626 6.46752 6.48709 6.52111 6.59675 6.61595 6.81481 7.04501 7.05544 7.07096 7.16788 7.70279 7.75083 7.86319 8.02911 8.03220 8.45239 8.49878 9.07230 9.64039 11.13822 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012357 B = 0.002508 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.465217 B =11160.224228 C =12033.484623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.027 3.973 10 C -0.080 4.080 11 C -0.129 4.129 12 C 0.113 3.887 13 N -0.608 5.608 14 C 0.520 3.480 15 O -0.552 6.552 16 C -0.121 4.121 17 C -0.075 4.075 18 C -0.017 4.017 19 C -0.126 4.126 20 C -0.090 4.090 21 C -0.135 4.135 22 C -0.084 4.084 23 C -0.140 4.140 24 C 0.555 3.445 25 N -0.853 5.853 26 O -0.517 6.517 27 C 0.104 3.896 28 C -0.118 4.118 29 H 0.260 0.740 30 H 0.015 0.985 31 H 0.016 0.984 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.072 0.928 41 H 0.131 0.869 42 H 0.127 0.873 43 H 0.127 0.873 44 H 0.125 0.875 45 H 0.398 0.602 46 H 0.406 0.594 47 H 0.065 0.935 48 H 0.076 0.924 49 H 0.059 0.941 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.024 -17.398 -16.449 28.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.553 4.553 8 H 0.074 0.926 9 C -0.010 4.010 10 C -0.098 4.098 11 C -0.167 4.167 12 C -0.010 4.010 13 N -0.341 5.341 14 C 0.309 3.691 15 O -0.431 6.431 16 C -0.160 4.160 17 C -0.112 4.112 18 C -0.018 4.018 19 C -0.144 4.144 20 C -0.108 4.108 21 C -0.153 4.153 22 C -0.103 4.103 23 C -0.143 4.143 24 C 0.341 3.659 25 N -0.418 5.418 26 O -0.393 6.393 27 C -0.019 4.019 28 C -0.157 4.157 29 H 0.069 0.931 30 H 0.033 0.967 31 H 0.034 0.966 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.116 0.884 39 H 0.127 0.873 40 H 0.090 0.910 41 H 0.149 0.851 42 H 0.145 0.855 43 H 0.145 0.855 44 H 0.143 0.857 45 H 0.227 0.773 46 H 0.238 0.762 47 H 0.084 0.916 48 H 0.094 0.906 49 H 0.078 0.922 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 14.250 -17.877 -15.565 27.657 hybrid contribution 0.413 1.373 -0.609 1.558 sum 14.662 -16.503 -16.174 27.367 Atomic orbital electron populations 1.69964 1.06053 1.26481 1.51003 1.25027 0.94797 0.99163 0.95542 0.86649 0.79874 0.83775 0.78015 1.20766 1.21321 1.19908 1.21245 0.92908 0.90972 1.50193 0.92617 1.19127 0.93637 0.91025 0.97182 1.21177 0.97942 0.94668 0.96050 1.22016 0.97683 0.94881 1.02140 1.21621 0.92581 1.00212 0.86541 1.48156 1.46646 1.13021 1.26282 1.20525 0.81995 0.82925 0.83651 1.90635 1.48654 1.29455 1.74352 1.21486 0.99336 0.99914 0.95312 1.20614 1.01410 0.96768 0.92426 1.20118 0.94158 0.93274 0.94232 1.21149 0.93055 1.00990 0.99201 1.21379 0.99779 0.96881 0.92794 1.21080 0.95633 1.00142 0.98468 1.21265 0.94029 0.97911 0.97098 1.19792 0.94156 1.05095 0.95244 1.18334 0.86908 0.77259 0.83387 1.43788 1.18408 1.68642 1.10955 1.90878 1.61091 1.53284 1.34056 1.22002 0.95056 0.83875 1.00924 1.21968 0.97547 0.97031 0.99104 0.93078 0.96660 0.96604 0.92428 0.92092 0.91279 0.89796 0.92075 0.89933 0.88350 0.87266 0.90969 0.85139 0.85510 0.85470 0.85686 0.77298 0.76247 0.91645 0.90595 0.92239 0.89896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.51 -14.19 8.39 -34.44 -0.29 -14.48 16 8 H 0.06 1.47 7.05 -52.49 -0.37 1.10 16 9 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 10 C -0.08 -1.61 2.10 -90.58 -0.19 -1.80 16 11 C -0.13 -2.35 5.36 -26.61 -0.14 -2.49 16 12 C 0.11 1.85 6.43 -3.71 -0.02 1.83 16 13 N -0.61 -9.87 2.97 -172.51 -0.51 -10.38 16 14 C 0.52 8.67 7.70 -10.99 -0.08 8.59 16 15 O -0.55 -10.85 15.40 5.56 0.09 -10.76 16 16 C -0.12 -1.60 3.59 -27.89 -0.10 -1.70 16 17 C -0.07 -0.95 3.89 -27.89 -0.11 -1.06 16 18 C -0.02 -0.17 5.17 -104.23 -0.54 -0.71 16 19 C -0.13 -1.03 9.66 -39.64 -0.38 -1.41 16 20 C -0.09 -0.58 10.04 -39.49 -0.40 -0.98 16 21 C -0.14 -0.81 10.03 -39.64 -0.40 -1.21 16 22 C -0.08 -0.57 9.53 -39.19 -0.37 -0.94 16 23 C -0.14 -1.34 5.87 -104.97 -0.62 -1.96 16 24 C 0.55 6.08 7.96 -12.32 -0.10 5.98 16 25 N -0.85 -5.91 8.82 30.53 0.27 -5.64 16 26 O -0.52 -7.84 12.58 5.32 0.07 -7.77 16 27 C 0.10 1.54 6.37 -3.49 -0.02 1.52 16 28 C -0.12 -2.16 5.21 -26.39 -0.14 -2.30 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.08 1.43 7.01 -51.93 -0.36 1.07 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 0.90 7.93 -51.93 -0.41 0.49 16 38 H 0.10 1.39 6.38 -51.93 -0.33 1.06 16 39 H 0.11 1.69 5.77 -51.93 -0.30 1.39 16 40 H 0.07 0.88 8.00 -51.92 -0.42 0.47 16 41 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 42 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 43 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 44 H 0.13 0.47 6.45 -52.49 -0.34 0.13 16 45 H 0.40 1.47 6.90 -40.82 -0.28 1.18 16 46 H 0.41 2.61 8.93 -40.82 -0.36 2.24 16 47 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.08 0.97 5.93 -51.93 -0.31 0.66 16 49 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 50 H 0.08 1.58 6.91 -51.93 -0.36 1.22 16 LS Contribution 396.00 15.07 5.97 5.97 Total: -1.00 -35.51 396.00 -10.16 -45.67 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -7.63 Total: 3.79 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -4.12 Total: -11.07 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: 0.49 Total: -42.27 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: 0.15 Total: -18.53 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.51 -10.16 -45.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565602514.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.591 kcal (2) G-P(sol) polarization free energy of solvation -35.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds