Wall clock time and date at job start Wed Apr 1 2020 03:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99866 * 2 1 4 4 H 1.48500 * 109.47065 * 239.99276 * 3 2 1 5 5 H 1.48496 * 109.47402 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47276 * 119.99765 * 3 2 1 7 7 C 1.37877 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99854 * 192.59878 * 7 2 1 9 9 C 1.50697 * 119.99945 * 12.60681 * 7 2 1 10 10 C 1.52994 * 115.55205 * 39.78958 * 9 7 2 11 11 N 1.46500 * 109.47684 * 54.56959 * 10 9 7 12 12 C 1.34776 * 120.00679 * 184.92430 * 11 10 9 13 13 O 1.21590 * 119.99644 * 5.27498 * 12 11 10 14 14 N 1.34773 * 119.99903 * 185.27415 * 12 11 10 15 15 C 1.47151 * 120.98638 * 5.35727 * 14 12 11 16 16 C 1.53290 * 108.38685 * 230.51307 * 15 14 12 17 17 O 1.42961 * 109.22565 * 307.69785 * 16 15 14 18 18 C 1.42961 * 114.16527 * 62.57907 * 17 16 15 19 19 H 1.09007 * 109.51350 * 57.39750 * 18 17 16 20 20 C 1.52998 * 109.51293 * 177.49914 * 18 17 16 21 21 C 1.50704 * 109.47055 * 294.99890 * 20 18 17 22 22 C 1.38232 * 120.00126 * 269.72876 * 21 20 18 23 23 C 1.38235 * 120.00016 * 179.78724 * 22 21 20 24 24 C 1.38234 * 120.00008 * 0.43920 * 23 22 21 25 25 C 1.38240 * 119.99833 * 359.81307 * 24 23 22 26 26 C 1.38232 * 119.99943 * 359.97438 * 25 24 23 27 27 C 1.47154 * 120.97713 * 185.08179 * 14 12 11 28 28 C 1.53005 * 117.49892 * 254.07801 * 9 7 2 29 29 C 1.52996 * 60.00088 * 252.51231 * 28 9 7 30 30 H 0.96993 * 119.99938 * 354.99846 * 1 2 3 31 31 H 1.08998 * 109.47547 * 174.56909 * 10 9 7 32 32 H 1.09003 * 109.47149 * 294.56906 * 10 9 7 33 33 H 0.97005 * 119.99536 * 4.92054 * 11 10 9 34 34 H 1.09004 * 109.67840 * 350.23951 * 15 14 12 35 35 H 1.09003 * 109.67727 * 110.78710 * 15 14 12 36 36 H 1.08999 * 109.51486 * 67.62299 * 16 15 14 37 37 H 1.09001 * 109.51427 * 187.77525 * 16 15 14 38 38 H 1.08992 * 109.47310 * 55.00243 * 20 18 17 39 39 H 1.08999 * 109.47285 * 175.00454 * 20 18 17 40 40 H 1.08005 * 119.99908 * 359.97438 * 22 21 20 41 41 H 1.08004 * 120.00215 * 180.27945 * 23 22 21 42 42 H 1.07996 * 120.00172 * 179.83672 * 24 23 22 43 43 H 1.07993 * 119.99799 * 180.02562 * 25 24 23 44 44 H 1.07996 * 119.99993 * 180.02562 * 26 25 24 45 45 H 1.09005 * 109.67760 * 249.20956 * 27 14 12 46 46 H 1.09000 * 109.68359 * 9.76107 * 27 14 12 47 47 H 1.09003 * 117.49514 * 0.02562 * 28 9 7 48 48 H 1.08998 * 117.49741 * 145.02044 * 28 9 7 49 49 H 1.09000 * 117.49739 * 252.51099 * 29 28 9 50 50 H 1.09000 * 117.51995 * 107.48384 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0650 -1.2052 0.2046 9 6 1.2783 -2.4835 -0.2837 10 6 0.2198 -2.4155 -1.3863 11 7 0.8244 -1.8878 -2.6120 12 6 0.0558 -1.6452 -3.6922 13 8 -1.1512 -1.7726 -3.6205 14 7 0.6253 -1.2614 -4.8519 15 6 2.0888 -1.2130 -4.9976 16 6 2.4730 0.1577 -5.5662 17 8 1.7087 0.4082 -6.7481 18 6 0.2976 0.4758 -6.5292 19 1 0.0799 1.2503 -5.7937 20 6 -0.4085 0.8079 -7.8452 21 6 -0.0087 2.1896 -8.2950 22 6 -0.7477 3.2874 -7.8955 23 6 -0.3784 4.5551 -8.3045 24 6 0.7246 4.7243 -9.1203 25 6 1.4606 3.6259 -9.5241 26 6 1.0939 2.3586 -9.1115 27 6 -0.1981 -0.8841 -6.0116 28 6 1.0097 -3.4183 0.8974 29 6 2.0693 -3.7856 -0.1432 30 1 -0.4850 0.8368 0.0732 31 1 -0.1723 -3.4147 -1.5757 32 1 -0.5922 -1.7604 -1.0705 33 1 1.7779 -1.7129 -2.6460 34 1 2.5594 -1.3517 -4.0243 35 1 2.4159 -1.9981 -5.6794 36 1 2.2634 0.9305 -4.8266 37 1 3.5351 0.1657 -5.8111 38 1 -0.1213 0.0812 -8.6051 39 1 -1.4878 0.7721 -7.6976 40 1 -1.6119 3.1548 -7.2614 41 1 -0.9531 5.4133 -7.9887 42 1 1.0116 5.7145 -9.4420 43 1 2.3226 3.7581 -10.1611 44 1 1.6691 1.5006 -9.4266 45 1 -0.0973 -1.6366 -6.7938 46 1 -1.2426 -0.8049 -5.7101 47 1 1.3579 -3.1003 1.8802 48 1 0.0785 -3.9848 0.8892 49 1 1.8353 -4.5939 -0.8361 50 1 3.1151 -3.7096 0.1544 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578834599.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:16 Heat of formation + Delta-G solvation = -15.248713 kcal Electronic energy + Delta-G solvation = -30677.786150 eV Core-core repulsion = 26671.015526 eV Total energy + Delta-G solvation = -4006.770624 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.22400 -39.30492 -38.17554 -36.70237 -34.46810 -33.90264 -33.04351 -32.18634 -30.97427 -30.73753 -28.22368 -26.73597 -25.64970 -24.63183 -23.47968 -22.65856 -21.76130 -21.22155 -20.84738 -19.35518 -19.11991 -17.85748 -16.94046 -16.59535 -16.23254 -15.67709 -15.47469 -15.25600 -15.01669 -14.85591 -14.68611 -14.63839 -14.02603 -13.75522 -13.52392 -13.49778 -13.25426 -12.93316 -12.79674 -12.72504 -12.31261 -12.04427 -11.75766 -11.61695 -11.57028 -11.33788 -11.14680 -11.04448 -11.03387 -10.85127 -10.61128 -10.54935 -10.29956 -10.00922 -9.68601 -9.31644 -9.16213 -9.00443 -8.80795 -8.79264 -8.39554 -8.20173 -7.74698 -6.10480 -4.17630 1.24833 1.32275 3.05099 3.19227 3.27672 3.28458 3.59888 3.76792 3.87988 4.27822 4.49969 4.56116 4.74747 4.86656 4.91443 4.96706 5.00092 5.02340 5.08523 5.13735 5.27784 5.30154 5.38367 5.42187 5.46782 5.57786 5.60068 5.73280 5.80860 5.84599 5.92113 5.97611 6.00406 6.04464 6.28673 6.36631 6.41343 6.53546 6.54434 6.58675 6.66725 6.68669 6.89726 6.91417 7.03533 7.13889 7.27322 7.41879 7.57890 7.63870 7.90267 8.31124 8.69943 8.82889 9.32846 9.43437 10.90133 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013625 B = 0.002994 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.534920 B = 9350.376686 C =10273.571473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.080 3.920 3 Si 0.887 3.113 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.505 4.505 8 H 0.061 0.939 9 C 0.040 3.960 10 C 0.176 3.824 11 N -0.708 5.708 12 C 0.704 3.296 13 O -0.599 6.599 14 N -0.641 5.641 15 C 0.079 3.921 16 C 0.049 3.951 17 O -0.373 6.373 18 C 0.083 3.917 19 H 0.064 0.936 20 C -0.072 4.072 21 C -0.075 4.075 22 C -0.118 4.118 23 C -0.122 4.122 24 C -0.127 4.127 25 C -0.123 4.123 26 C -0.099 4.099 27 C 0.107 3.893 28 C -0.191 4.191 29 C -0.212 4.212 30 H 0.264 0.736 31 H 0.022 0.978 32 H 0.107 0.893 33 H 0.394 0.606 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.123 0.877 45 H 0.068 0.932 46 H 0.100 0.900 47 H 0.080 0.920 48 H 0.066 0.934 49 H 0.067 0.933 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.787 4.212 -17.950 18.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.125 4.125 3 Si 0.714 3.286 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.039 3.961 10 C 0.052 3.948 11 N -0.362 5.362 12 C 0.406 3.594 13 O -0.479 6.479 14 N -0.380 5.380 15 C -0.045 4.045 16 C -0.029 4.029 17 O -0.292 6.292 18 C 0.024 3.976 19 H 0.082 0.918 20 C -0.110 4.110 21 C -0.075 4.075 22 C -0.136 4.136 23 C -0.140 4.140 24 C -0.145 4.145 25 C -0.142 4.142 26 C -0.117 4.117 27 C -0.017 4.017 28 C -0.230 4.230 29 C -0.249 4.249 30 H 0.074 0.926 31 H 0.040 0.960 32 H 0.125 0.875 33 H 0.230 0.770 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.122 0.878 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.135 0.865 43 H 0.137 0.863 44 H 0.141 0.859 45 H 0.086 0.914 46 H 0.118 0.882 47 H 0.098 0.902 48 H 0.085 0.915 49 H 0.086 0.914 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.791 4.233 -18.070 18.645 hybrid contribution 1.002 0.971 0.530 1.492 sum 2.793 5.203 -17.540 18.508 Atomic orbital electron populations 1.69850 1.05938 1.27132 1.46762 1.24933 0.94646 0.98850 0.94101 0.86749 0.79767 0.83333 0.78751 1.20142 1.21246 1.20177 1.20380 0.94524 0.89111 1.50206 0.92118 1.19139 0.94856 0.89033 0.93045 1.20869 0.97197 0.95809 0.80900 1.45127 1.11085 1.68268 1.11699 1.15869 0.85345 0.78210 0.80002 1.90843 1.12646 1.60418 1.83963 1.47230 1.05682 1.73083 1.12054 1.22262 0.81604 0.98186 1.02451 1.22950 0.96181 0.95751 0.87981 1.87908 1.17007 1.92537 1.31766 1.22573 0.81927 0.96568 0.96562 0.91755 1.20607 1.00200 0.93924 0.96269 1.19752 0.95664 0.94835 0.97279 1.21108 1.00059 0.92413 1.00066 1.21112 0.97427 0.97109 0.98371 1.21122 0.95995 0.98658 0.98731 1.21138 0.99757 0.92819 1.00439 1.21043 0.96111 0.97273 0.97239 1.22092 0.97027 0.95151 0.87437 1.22877 0.97976 1.06514 0.95635 1.22947 0.96430 1.01475 1.04095 0.92560 0.95971 0.87538 0.77009 0.88980 0.90970 0.92544 0.87840 0.89797 0.89126 0.86103 0.86285 0.86453 0.86328 0.85905 0.91419 0.88203 0.90153 0.91540 0.91408 0.90627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.47 11.08 55.43 0.61 -22.86 16 2 C 0.08 2.07 5.22 -17.82 -0.09 1.98 16 3 Si 0.89 20.13 29.56 -169.99 -5.02 15.10 16 4 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.51 -12.76 8.38 -34.44 -0.29 -13.05 16 8 H 0.06 1.52 7.85 -52.49 -0.41 1.11 16 9 C 0.04 0.94 1.86 -155.66 -0.29 0.65 16 10 C 0.18 4.16 4.95 -4.04 -0.02 4.14 16 11 N -0.71 -15.10 5.25 -65.23 -0.34 -15.44 16 12 C 0.70 14.89 8.31 -86.92 -0.72 14.17 16 13 O -0.60 -14.77 15.82 5.29 0.08 -14.68 16 14 N -0.64 -10.66 3.01 -177.74 -0.54 -11.19 16 15 C 0.08 1.06 6.64 -3.54 -0.02 1.04 16 16 C 0.05 0.61 6.98 37.31 0.26 0.88 16 17 O -0.37 -4.83 9.88 -35.23 -0.35 -5.18 16 18 C 0.08 1.05 2.78 -26.36 -0.07 0.97 16 19 H 0.06 0.94 8.14 -51.92 -0.42 0.51 16 20 C -0.07 -0.74 5.06 -27.88 -0.14 -0.88 16 21 C -0.08 -0.83 4.97 -104.62 -0.52 -1.34 16 22 C -0.12 -1.28 9.70 -39.58 -0.38 -1.66 16 23 C -0.12 -1.24 10.05 -39.58 -0.40 -1.63 16 24 C -0.13 -1.23 10.05 -39.58 -0.40 -1.63 16 25 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 26 C -0.10 -1.05 9.40 -39.58 -0.37 -1.42 16 27 C 0.11 1.52 5.93 -3.31 -0.02 1.50 16 28 C -0.19 -4.21 9.96 -26.73 -0.27 -4.48 16 29 C -0.21 -4.35 9.92 -26.73 -0.27 -4.62 16 30 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 31 H 0.02 0.51 8.09 -51.93 -0.42 0.09 16 32 H 0.11 2.92 6.10 -51.93 -0.32 2.60 16 33 H 0.39 7.82 5.66 -40.82 -0.23 7.59 16 34 H 0.09 1.26 5.65 -51.93 -0.29 0.97 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 39 H 0.09 0.80 8.08 -51.93 -0.42 0.38 16 40 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 41 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 42 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 43 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 44 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 45 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.10 1.55 7.12 -51.93 -0.37 1.18 16 47 H 0.08 1.79 8.14 -51.93 -0.42 1.36 16 48 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 49 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 50 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 404.66 15.07 6.10 6.10 Total: -1.00 -30.45 404.66 -11.80 -42.26 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -7.94 Total: 12.89 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -4.41 Total: -7.00 kcal Atomic # 7 Polarization: -49.23 SS G_CDS: -0.26 Total: -49.49 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.26 Total: -19.86 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -30.45 -11.80 -42.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578834599.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.009 kcal (2) G-P(sol) polarization free energy of solvation -30.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds