Wall clock time and date at job start Wed Apr 1 2020 03:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99866 * 2 1 4 4 H 1.48500 * 109.47065 * 239.99276 * 3 2 1 5 5 H 1.48496 * 109.47402 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47276 * 119.99765 * 3 2 1 7 7 C 1.37877 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99854 * 192.59878 * 7 2 1 9 9 C 1.50697 * 119.99945 * 12.60681 * 7 2 1 10 10 C 1.52994 * 115.55205 * 39.78958 * 9 7 2 11 11 N 1.46500 * 109.47684 * 54.56959 * 10 9 7 12 12 C 1.34776 * 120.00679 * 184.92430 * 11 10 9 13 13 O 1.21590 * 119.99644 * 5.27498 * 12 11 10 14 14 N 1.34773 * 119.99903 * 185.27415 * 12 11 10 15 15 C 1.47151 * 120.98638 * 5.35727 * 14 12 11 16 16 C 1.53290 * 108.38685 * 230.51307 * 15 14 12 17 17 O 1.42961 * 109.22565 * 307.69785 * 16 15 14 18 18 C 1.42961 * 114.16527 * 62.57907 * 17 16 15 19 19 H 1.09007 * 109.51350 * 57.39750 * 18 17 16 20 20 C 1.52998 * 109.51293 * 177.49914 * 18 17 16 21 21 C 1.50704 * 109.47055 * 294.99890 * 20 18 17 22 22 C 1.38232 * 120.00126 * 269.72876 * 21 20 18 23 23 C 1.38235 * 120.00016 * 179.78724 * 22 21 20 24 24 C 1.38234 * 120.00008 * 0.43920 * 23 22 21 25 25 C 1.38240 * 119.99833 * 359.81307 * 24 23 22 26 26 C 1.38232 * 119.99943 * 359.97438 * 25 24 23 27 27 C 1.47154 * 120.97713 * 185.08179 * 14 12 11 28 28 C 1.53005 * 117.49892 * 254.07801 * 9 7 2 29 29 C 1.52996 * 60.00088 * 252.51231 * 28 9 7 30 30 H 0.96993 * 119.99938 * 354.99846 * 1 2 3 31 31 H 1.08998 * 109.47547 * 174.56909 * 10 9 7 32 32 H 1.09003 * 109.47149 * 294.56906 * 10 9 7 33 33 H 0.97005 * 119.99536 * 4.92054 * 11 10 9 34 34 H 1.09004 * 109.67840 * 350.23951 * 15 14 12 35 35 H 1.09003 * 109.67727 * 110.78710 * 15 14 12 36 36 H 1.08999 * 109.51486 * 67.62299 * 16 15 14 37 37 H 1.09001 * 109.51427 * 187.77525 * 16 15 14 38 38 H 1.08992 * 109.47310 * 55.00243 * 20 18 17 39 39 H 1.08999 * 109.47285 * 175.00454 * 20 18 17 40 40 H 1.08005 * 119.99908 * 359.97438 * 22 21 20 41 41 H 1.08004 * 120.00215 * 180.27945 * 23 22 21 42 42 H 1.07996 * 120.00172 * 179.83672 * 24 23 22 43 43 H 1.07993 * 119.99799 * 180.02562 * 25 24 23 44 44 H 1.07996 * 119.99993 * 180.02562 * 26 25 24 45 45 H 1.09005 * 109.67760 * 249.20956 * 27 14 12 46 46 H 1.09000 * 109.68359 * 9.76107 * 27 14 12 47 47 H 1.09003 * 117.49514 * 0.02562 * 28 9 7 48 48 H 1.08998 * 117.49741 * 145.02044 * 28 9 7 49 49 H 1.09000 * 117.49739 * 252.51099 * 29 28 9 50 50 H 1.09000 * 117.51995 * 107.48384 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0650 -1.2052 0.2046 9 6 1.2783 -2.4835 -0.2837 10 6 0.2198 -2.4155 -1.3863 11 7 0.8244 -1.8878 -2.6120 12 6 0.0558 -1.6452 -3.6922 13 8 -1.1512 -1.7726 -3.6205 14 7 0.6253 -1.2614 -4.8519 15 6 2.0888 -1.2130 -4.9976 16 6 2.4730 0.1577 -5.5662 17 8 1.7087 0.4082 -6.7481 18 6 0.2976 0.4758 -6.5292 19 1 0.0799 1.2503 -5.7937 20 6 -0.4085 0.8079 -7.8452 21 6 -0.0087 2.1896 -8.2950 22 6 -0.7477 3.2874 -7.8955 23 6 -0.3784 4.5551 -8.3045 24 6 0.7246 4.7243 -9.1203 25 6 1.4606 3.6259 -9.5241 26 6 1.0939 2.3586 -9.1115 27 6 -0.1981 -0.8841 -6.0116 28 6 1.0097 -3.4183 0.8974 29 6 2.0693 -3.7856 -0.1432 30 1 -0.4850 0.8368 0.0732 31 1 -0.1723 -3.4147 -1.5757 32 1 -0.5922 -1.7604 -1.0705 33 1 1.7779 -1.7129 -2.6460 34 1 2.5594 -1.3517 -4.0243 35 1 2.4159 -1.9981 -5.6794 36 1 2.2634 0.9305 -4.8266 37 1 3.5351 0.1657 -5.8111 38 1 -0.1213 0.0812 -8.6051 39 1 -1.4878 0.7721 -7.6976 40 1 -1.6119 3.1548 -7.2614 41 1 -0.9531 5.4133 -7.9887 42 1 1.0116 5.7145 -9.4420 43 1 2.3226 3.7581 -10.1611 44 1 1.6691 1.5006 -9.4266 45 1 -0.0973 -1.6366 -6.7938 46 1 -1.2426 -0.8049 -5.7101 47 1 1.3579 -3.1003 1.8802 48 1 0.0785 -3.9848 0.8892 49 1 1.8353 -4.5939 -0.8361 50 1 3.1151 -3.7096 0.1544 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578834599.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:15 Heat of formation + Delta-G solvation = -31.130716 kcal Electronic energy + Delta-G solvation = -30678.474846 eV Core-core repulsion = 26671.015526 eV Total energy + Delta-G solvation = -4007.459320 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.52911 -40.27961 -39.41718 -38.43839 -35.82712 -34.98454 -34.55513 -34.14107 -31.72604 -31.71020 -29.39682 -28.12990 -27.45724 -26.11071 -24.54434 -23.42047 -23.02392 -22.76016 -21.74118 -21.19384 -20.60316 -19.38832 -18.07905 -17.76024 -17.52043 -17.06939 -16.84559 -16.59832 -16.26739 -16.05127 -15.81394 -15.70689 -15.57843 -15.19556 -15.05611 -14.49759 -14.39685 -14.22774 -14.08928 -13.63988 -13.52090 -13.49462 -13.24471 -12.94852 -12.85353 -12.75687 -12.68652 -12.36850 -12.32869 -12.04207 -11.97525 -11.79843 -11.69712 -11.45164 -11.21705 -11.07894 -10.98314 -10.60652 -10.15943 -9.87235 -9.76814 -9.58850 -9.28701 -8.06714 -6.18843 0.47549 0.55555 1.38441 1.41553 1.47562 1.65925 2.23294 2.38908 2.66724 2.93108 2.95773 3.17936 3.56360 3.65507 3.89008 3.95262 3.99924 4.04845 4.08979 4.20620 4.25196 4.25691 4.34580 4.38152 4.46509 4.53722 4.58617 4.68198 4.70087 4.72431 4.77463 4.78723 4.84189 4.88518 4.97616 5.01597 5.10498 5.20296 5.22670 5.27385 5.47689 5.53181 5.59537 5.61644 5.66579 5.75867 5.82882 5.90584 6.00222 6.09830 6.18364 6.37642 6.81335 7.13960 7.44627 7.68435 8.91566 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013625 B = 0.002994 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.534920 B = 9350.376686 C =10273.571473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.041 3.959 3 Si 0.937 3.063 4 H -0.263 1.263 5 H -0.298 1.298 6 H -0.271 1.271 7 C -0.508 4.508 8 H 0.062 0.938 9 C 0.012 3.988 10 C 0.189 3.811 11 N -0.705 5.705 12 C 0.698 3.302 13 O -0.642 6.642 14 N -0.637 5.637 15 C 0.076 3.924 16 C 0.051 3.949 17 O -0.371 6.371 18 C 0.092 3.908 19 H 0.039 0.961 20 C -0.065 4.065 21 C -0.089 4.089 22 C -0.136 4.136 23 C -0.134 4.134 24 C -0.133 4.133 25 C -0.130 4.130 26 C -0.109 4.109 27 C 0.105 3.895 28 C -0.197 4.197 29 C -0.180 4.180 30 H 0.256 0.744 31 H 0.022 0.978 32 H 0.065 0.935 33 H 0.401 0.599 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.034 0.966 37 H 0.137 0.863 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.123 0.877 41 H 0.133 0.867 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.131 0.869 45 H 0.092 0.908 46 H 0.081 0.919 47 H 0.074 0.926 48 H 0.073 0.927 49 H 0.087 0.913 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.111 4.165 -19.765 20.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.162 4.162 3 Si 0.763 3.237 4 H -0.187 1.187 5 H -0.224 1.224 6 H -0.196 1.196 7 C -0.545 4.545 8 H 0.080 0.920 9 C 0.011 3.989 10 C 0.064 3.936 11 N -0.359 5.359 12 C 0.399 3.601 13 O -0.525 6.525 14 N -0.376 5.376 15 C -0.047 4.047 16 C -0.027 4.027 17 O -0.289 6.289 18 C 0.033 3.967 19 H 0.057 0.943 20 C -0.103 4.103 21 C -0.089 4.089 22 C -0.155 4.155 23 C -0.152 4.152 24 C -0.151 4.151 25 C -0.148 4.148 26 C -0.127 4.127 27 C -0.018 4.018 28 C -0.236 4.236 29 C -0.217 4.217 30 H 0.066 0.934 31 H 0.040 0.960 32 H 0.083 0.917 33 H 0.238 0.762 34 H 0.107 0.893 35 H 0.117 0.883 36 H 0.053 0.947 37 H 0.155 0.845 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.141 0.859 41 H 0.151 0.849 42 H 0.156 0.844 43 H 0.157 0.843 44 H 0.149 0.851 45 H 0.110 0.890 46 H 0.099 0.901 47 H 0.093 0.907 48 H 0.091 0.909 49 H 0.105 0.895 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.178 4.191 -19.918 20.778 hybrid contribution 0.295 0.979 1.082 1.489 sum 4.474 5.169 -18.836 20.038 Atomic orbital electron populations 1.70025 1.07286 1.27044 1.48532 1.25525 0.95044 1.01525 0.94089 0.85935 0.78600 0.79821 0.79310 1.18731 1.22401 1.19622 1.20622 0.94558 0.89987 1.49333 0.91993 1.19166 0.96093 0.89809 0.93835 1.20501 0.96404 0.94727 0.81954 1.44953 1.11337 1.68390 1.11208 1.16077 0.84824 0.78155 0.81010 1.90804 1.14572 1.62244 1.84905 1.47298 1.07489 1.71688 1.11097 1.22518 0.79291 0.99756 1.03099 1.23038 0.97882 0.94283 0.87453 1.87925 1.16861 1.92357 1.31765 1.22457 0.82201 0.94704 0.97292 0.94303 1.20588 1.00456 0.94145 0.95096 1.19873 0.96177 0.95000 0.97866 1.21305 1.00540 0.93024 1.00583 1.21388 0.97934 0.97354 0.98483 1.21445 0.95621 0.99784 0.98253 1.21454 1.00335 0.92565 1.00413 1.21235 0.96092 0.98040 0.97312 1.22272 0.95864 0.96732 0.86966 1.22887 0.99168 1.06265 0.95252 1.22944 0.96425 0.99674 1.02683 0.93411 0.95989 0.91659 0.76150 0.89289 0.88260 0.94714 0.84517 0.88265 0.88228 0.85937 0.84910 0.84373 0.84278 0.85107 0.89024 0.90085 0.90743 0.90871 0.89505 0.89485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.03 11.08 21.45 0.24 -49.79 16 2 C 0.04 2.10 5.22 84.65 0.44 2.54 16 3 Si 0.94 41.29 29.56 68.60 2.03 43.32 16 4 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 5 H -0.30 -13.56 7.11 99.48 0.71 -12.86 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.51 -25.43 8.38 25.60 0.21 -25.21 16 8 H 0.06 3.03 7.85 -2.91 -0.02 3.01 16 9 C 0.01 0.54 1.86 -52.93 -0.10 0.45 16 10 C 0.19 9.09 4.95 86.38 0.43 9.52 16 11 N -0.71 -30.24 5.25 -478.54 -2.51 -32.76 16 12 C 0.70 29.97 8.31 179.06 1.49 31.46 16 13 O -0.64 -32.80 15.82 -4.00 -0.06 -32.86 16 14 N -0.64 -20.87 3.01 -834.52 -2.52 -23.38 16 15 C 0.08 1.89 6.64 86.35 0.57 2.47 16 16 C 0.05 1.17 6.98 72.08 0.50 1.67 16 17 O -0.37 -8.84 9.88 -148.98 -1.47 -10.32 16 18 C 0.09 2.28 2.78 30.83 0.09 2.37 16 19 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 20 C -0.07 -1.26 5.06 29.85 0.15 -1.10 16 21 C -0.09 -1.87 4.97 -19.87 -0.10 -1.97 16 22 C -0.14 -2.90 9.70 22.27 0.22 -2.69 16 23 C -0.13 -2.58 10.05 22.27 0.22 -2.35 16 24 C -0.13 -2.34 10.05 22.27 0.22 -2.12 16 25 C -0.13 -2.29 10.05 22.27 0.22 -2.06 16 26 C -0.11 -2.12 9.40 22.27 0.21 -1.91 16 27 C 0.10 2.91 5.93 86.49 0.51 3.43 16 28 C -0.20 -8.52 9.96 30.59 0.30 -8.21 16 29 C -0.18 -6.99 9.92 30.59 0.30 -6.68 16 30 H 0.26 14.23 8.32 -92.71 -0.77 13.46 16 31 H 0.02 1.03 8.09 -2.39 -0.02 1.01 16 32 H 0.07 3.73 6.10 -2.39 -0.01 3.71 16 33 H 0.40 15.73 5.66 -92.70 -0.52 15.20 16 34 H 0.09 2.28 5.65 -2.38 -0.01 2.27 16 35 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.14 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.10 1.60 8.08 -2.39 -0.02 1.58 16 39 H 0.10 1.70 8.08 -2.39 -0.02 1.68 16 40 H 0.12 2.42 8.06 -2.91 -0.02 2.40 16 41 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 42 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 43 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 44 H 0.13 2.26 8.06 -2.91 -0.02 2.23 16 45 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 46 H 0.08 2.58 7.12 -2.39 -0.02 2.56 16 47 H 0.07 3.27 8.14 -2.39 -0.02 3.25 16 48 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 49 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 50 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 Total: -1.00 -66.70 404.66 2.02 -64.68 By element: Atomic # 1 Polarization: 41.11 SS G_CDS: 0.41 Total: 41.52 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: 5.91 Total: -0.41 kcal Atomic # 7 Polarization: -101.14 SS G_CDS: -4.79 Total: -105.93 kcal Atomic # 8 Polarization: -41.64 SS G_CDS: -1.54 Total: -43.18 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Total: -66.70 2.02 -64.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578834599.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.553 kcal (2) G-P(sol) polarization free energy of solvation -66.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds