Wall clock time and date at job start Wed Apr 1 2020 03:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00203 * 2 1 4 4 H 1.48509 * 109.46979 * 275.82329 * 3 2 1 5 5 H 1.48500 * 109.47408 * 35.81799 * 3 2 1 6 6 H 1.48497 * 109.47295 * 155.82161 * 3 2 1 7 7 C 1.37876 * 119.99832 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00023 * 344.10325 * 7 2 1 9 9 C 1.50698 * 120.00267 * 164.10991 * 7 2 1 10 10 C 1.53007 * 115.54820 * 326.97404 * 9 7 2 11 11 N 1.46505 * 109.46979 * 281.40688 * 10 9 7 12 12 C 1.34770 * 119.99930 * 185.02298 * 11 10 9 13 13 O 1.21585 * 120.00105 * 4.99689 * 12 11 10 14 14 N 1.34780 * 120.00117 * 185.00361 * 12 11 10 15 15 C 1.47151 * 120.98001 * 355.03240 * 14 12 11 16 16 C 1.53305 * 108.38368 * 129.44503 * 15 14 12 17 17 O 1.42963 * 109.21861 * 52.30410 * 16 15 14 18 18 C 1.42959 * 114.16608 * 297.41793 * 17 16 15 19 19 H 1.09005 * 109.55407 * 302.63355 * 18 17 16 20 20 C 1.53003 * 109.51417 * 182.51076 * 18 17 16 21 21 C 1.50700 * 109.47134 * 65.24757 * 20 18 17 22 22 C 1.38228 * 120.00377 * 270.28251 * 21 20 18 23 23 C 1.38234 * 119.99909 * 180.24024 * 22 21 20 24 24 C 1.38232 * 120.00215 * 359.48174 * 23 22 21 25 25 C 1.38236 * 119.99773 * 0.26238 * 24 23 22 26 26 C 1.38236 * 120.00116 * 359.97438 * 25 24 23 27 27 C 1.47151 * 120.98574 * 175.01516 * 14 12 11 28 28 C 1.52993 * 117.52314 * 112.67280 * 9 7 2 29 29 C 1.53000 * 117.50320 * 181.30780 * 9 7 2 30 30 H 0.97005 * 120.00203 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.47544 * 161.40404 * 10 9 7 32 32 H 1.08999 * 109.47155 * 41.39576 * 10 9 7 33 33 H 0.96997 * 119.99892 * 5.01235 * 11 10 9 34 34 H 1.08997 * 109.68465 * 249.16679 * 15 14 12 35 35 H 1.09006 * 109.68156 * 9.72623 * 15 14 12 36 36 H 1.08995 * 109.51321 * 172.22933 * 16 15 14 37 37 H 1.09002 * 109.51062 * 292.33227 * 16 15 14 38 38 H 1.09005 * 109.46463 * 305.25767 * 20 18 17 39 39 H 1.08992 * 109.47107 * 185.25793 * 20 18 17 40 40 H 1.07998 * 120.00217 * 359.97438 * 22 21 20 41 41 H 1.08004 * 120.00342 * 179.75954 * 23 22 21 42 42 H 1.08005 * 120.00451 * 180.28090 * 24 23 22 43 43 H 1.07997 * 120.00194 * 180.02562 * 25 24 23 44 44 H 1.07996 * 120.00389 * 180.02562 * 26 25 24 45 45 H 1.08999 * 109.68210 * 110.83306 * 27 14 12 46 46 H 1.08999 * 109.71075 * 350.29339 * 27 14 12 47 47 H 1.08996 * 117.50170 * 214.97354 * 28 9 7 48 48 H 1.09005 * 117.49645 * 359.97438 * 28 9 7 49 49 H 1.09004 * 117.49823 * 359.96977 * 29 9 7 50 50 H 1.08993 * 117.50340 * 144.99690 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.3736 2.1174 -1.3929 5 1 1.5135 2.6141 0.8193 6 1 3.6027 1.4077 0.5734 7 6 2.0045 -1.1941 -0.0005 8 1 1.4954 -2.1116 0.2552 9 6 3.4682 -1.2189 -0.3579 10 6 3.9117 -0.1861 -1.3959 11 7 3.5400 -0.6492 -2.7353 12 6 3.9209 0.0528 -3.8208 13 8 4.6486 1.0188 -3.6956 14 7 3.4950 -0.3158 -5.0453 15 6 2.7038 -1.5419 -5.2347 16 6 1.4557 -1.1903 -6.0527 17 8 1.8507 -0.4997 -7.2405 18 6 2.5056 0.7483 -7.0015 19 1 1.8546 1.3952 -6.4134 20 6 2.8241 1.4225 -8.3376 21 6 1.5390 1.7810 -9.0382 22 6 0.9428 0.8748 -9.8951 23 6 -0.2334 1.2057 -10.5416 24 6 -0.8191 2.4385 -10.3230 25 6 -0.2257 3.3427 -9.4621 26 6 0.9531 3.0138 -8.8193 27 6 3.8073 0.4961 -6.2322 28 6 4.4604 -1.5778 0.7500 29 6 4.1696 -2.5787 -0.3700 30 1 -0.4851 0.8401 0.0004 31 1 4.9929 -0.0585 -1.3427 32 1 3.4229 0.7666 -1.1924 33 1 3.0199 -1.4611 -2.8407 34 1 3.2972 -2.2827 -5.7705 35 1 2.4066 -1.9406 -4.2647 36 1 0.9273 -2.1048 -6.3219 37 1 0.8002 -0.5519 -5.4604 38 1 3.3995 0.7386 -8.9615 39 1 3.4051 2.3272 -8.1586 40 1 1.3982 -0.0900 -10.0628 41 1 -0.6972 0.4992 -11.2141 42 1 -1.7405 2.6953 -10.8246 43 1 -0.6835 4.3058 -9.2909 44 1 1.4165 3.7200 -8.1463 45 1 4.5118 -0.0396 -6.8684 46 1 4.2413 1.4471 -5.9233 47 1 5.4291 -1.0782 0.7395 48 1 4.0545 -1.7956 1.7380 49 1 3.5723 -3.4553 -0.1191 50 1 4.9468 -2.7375 -1.1174 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578834601.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:19 Heat of formation + Delta-G solvation = -1.563382 kcal Electronic energy + Delta-G solvation = -30579.296884 eV Core-core repulsion = 26573.119700 eV Total energy + Delta-G solvation = -4006.177184 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.43836 -39.42874 -38.42630 -37.08774 -34.68144 -34.02123 -33.36293 -32.32651 -31.00586 -30.85261 -28.42535 -27.35897 -25.98261 -24.67670 -23.59535 -22.69378 -21.97093 -21.47033 -20.92585 -19.61262 -19.26577 -18.11552 -17.01428 -16.74049 -16.45938 -16.02354 -15.76002 -15.53809 -15.22297 -15.06262 -14.84221 -14.77086 -14.20266 -13.94997 -13.55268 -13.53102 -13.35892 -13.26854 -13.00010 -12.83671 -12.51753 -12.26707 -12.14305 -12.08905 -11.77617 -11.41962 -11.19781 -11.08443 -11.01794 -10.71896 -10.66057 -10.50426 -10.16601 -10.10301 -9.85018 -9.50665 -9.41206 -9.04673 -9.03444 -8.85234 -8.56926 -8.43110 -8.07499 -6.28855 -4.21166 1.21322 1.29244 2.77845 3.25745 3.36461 3.38593 3.51608 3.56088 3.71369 4.18240 4.29265 4.44219 4.70647 4.74578 4.79671 4.86504 4.91135 4.97181 4.98067 5.03219 5.19496 5.21328 5.27142 5.32042 5.38370 5.50655 5.53784 5.59496 5.63394 5.69426 5.74455 5.84467 5.86818 5.93604 5.95666 6.09966 6.16760 6.33412 6.36130 6.38664 6.43288 6.50254 6.52499 6.63926 6.82338 6.87916 7.02098 7.05871 7.09087 7.21078 7.60874 8.32815 8.36382 8.76868 8.94597 9.37051 10.82151 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014753 B = 0.002823 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.403447 B = 9916.846661 C =10513.498234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.083 3.917 3 Si 0.886 3.114 4 H -0.279 1.279 5 H -0.298 1.298 6 H -0.263 1.263 7 C -0.491 4.491 8 H 0.080 0.920 9 C -0.006 4.006 10 C 0.166 3.834 11 N -0.720 5.720 12 C 0.706 3.294 13 O -0.599 6.599 14 N -0.636 5.636 15 C 0.077 3.923 16 C 0.049 3.951 17 O -0.372 6.372 18 C 0.082 3.918 19 H 0.065 0.935 20 C -0.072 4.072 21 C -0.077 4.077 22 C -0.098 4.098 23 C -0.123 4.123 24 C -0.126 4.126 25 C -0.122 4.122 26 C -0.118 4.118 27 C 0.105 3.895 28 C -0.199 4.199 29 C -0.188 4.188 30 H 0.267 0.733 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.401 0.599 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.070 0.930 46 H 0.100 0.900 47 H 0.070 0.930 48 H 0.089 0.911 49 H 0.084 0.916 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.202 0.335 -20.148 20.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.122 4.122 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.227 1.227 6 H -0.189 1.189 7 C -0.528 4.528 8 H 0.098 0.902 9 C -0.008 4.008 10 C 0.043 3.957 11 N -0.375 5.375 12 C 0.407 3.593 13 O -0.478 6.478 14 N -0.376 5.376 15 C -0.047 4.047 16 C -0.028 4.028 17 O -0.291 6.291 18 C 0.024 3.976 19 H 0.083 0.917 20 C -0.110 4.110 21 C -0.077 4.077 22 C -0.116 4.116 23 C -0.141 4.141 24 C -0.144 4.144 25 C -0.140 4.140 26 C -0.136 4.136 27 C -0.019 4.019 28 C -0.237 4.237 29 C -0.225 4.225 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.238 0.762 34 H 0.093 0.907 35 H 0.112 0.888 36 H 0.124 0.876 37 H 0.077 0.923 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.141 0.859 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.089 0.911 46 H 0.118 0.882 47 H 0.089 0.911 48 H 0.107 0.893 49 H 0.103 0.897 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.507 1.081 -20.171 20.354 hybrid contribution 0.063 0.537 0.390 0.667 sum 2.570 1.618 -19.780 20.012 Atomic orbital electron populations 1.69936 1.06418 1.27463 1.47780 1.24962 0.94533 0.99074 0.93625 0.86885 0.80235 0.83558 0.77548 1.20662 1.22657 1.18859 1.20283 0.89492 0.95485 1.47521 0.90221 1.19547 0.94462 0.92227 0.94527 1.21201 0.97871 0.96937 0.79664 1.45211 1.58321 1.29218 1.04799 1.15870 0.80461 0.82749 0.80177 1.90860 1.41556 1.30259 1.85111 1.47204 1.58056 1.26343 1.05961 1.22338 0.93332 0.87244 1.01804 1.22956 0.95198 0.97779 0.86894 1.87925 1.77470 1.33604 1.30074 1.22484 0.93423 0.86191 0.95540 0.91709 1.20598 0.94949 1.00882 0.94525 1.19730 0.96731 0.94051 0.97160 1.21040 0.95573 0.98880 0.96119 1.21147 0.96124 0.96751 1.00093 1.21132 0.99904 0.94363 0.98992 1.21115 0.95919 0.99600 0.97369 1.21098 0.96178 0.96545 0.99822 1.22075 0.96552 0.97490 0.85767 1.23131 1.00240 1.05079 0.95289 1.22783 1.03389 0.94482 1.01868 0.92328 0.92720 0.92960 0.76182 0.90652 0.88829 0.87552 0.92253 0.89743 0.89153 0.85884 0.86276 0.86399 0.86259 0.86160 0.91135 0.88180 0.91138 0.89293 0.89727 0.90892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.55 13.96 55.43 0.77 -24.78 16 2 C 0.08 2.28 5.40 -17.82 -0.10 2.18 16 3 Si 0.89 22.37 24.32 -169.99 -4.13 18.23 16 4 H -0.28 -7.28 6.87 56.52 0.39 -6.89 16 5 H -0.30 -7.52 7.11 56.52 0.40 -7.11 16 6 H -0.26 -6.43 6.80 56.52 0.38 -6.05 16 7 C -0.49 -12.95 9.56 -34.44 -0.33 -13.28 16 8 H 0.08 2.26 8.06 -52.49 -0.42 1.83 16 9 C -0.01 -0.14 1.30 -155.66 -0.20 -0.34 16 10 C 0.17 3.73 4.65 -4.04 -0.02 3.71 16 11 N -0.72 -14.40 5.45 -65.22 -0.36 -14.75 16 12 C 0.71 13.98 8.31 -86.92 -0.72 13.26 16 13 O -0.60 -13.81 15.82 5.29 0.08 -13.73 16 14 N -0.64 -9.87 3.02 -178.00 -0.54 -10.41 16 15 C 0.08 0.95 6.63 -3.53 -0.02 0.93 16 16 C 0.05 0.58 6.99 37.32 0.26 0.84 16 17 O -0.37 -4.53 9.88 -35.23 -0.35 -4.88 16 18 C 0.08 0.98 2.76 -26.58 -0.07 0.91 16 19 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 20 C -0.07 -0.68 5.06 -27.88 -0.14 -0.82 16 21 C -0.08 -0.80 4.97 -104.62 -0.52 -1.32 16 22 C -0.10 -1.00 9.40 -39.59 -0.37 -1.37 16 23 C -0.12 -1.17 10.05 -39.58 -0.40 -1.56 16 24 C -0.13 -1.17 10.05 -39.58 -0.40 -1.57 16 25 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 26 C -0.12 -1.23 9.70 -39.58 -0.38 -1.61 16 27 C 0.10 1.38 5.91 -3.54 -0.02 1.36 16 28 C -0.20 -4.03 9.88 -26.73 -0.26 -4.30 16 29 C -0.19 -3.59 9.93 -26.73 -0.27 -3.85 16 30 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.05 1.20 7.92 -51.93 -0.41 0.78 16 32 H 0.05 1.31 1.79 -51.93 -0.09 1.22 16 33 H 0.40 7.30 5.99 -40.82 -0.24 7.06 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 1.18 5.66 -51.93 -0.29 0.89 16 36 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.08 0.72 8.09 -51.93 -0.42 0.30 16 39 H 0.09 0.74 8.09 -51.93 -0.42 0.32 16 40 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 41 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16 42 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 43 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.10 1.43 7.12 -51.93 -0.37 1.06 16 47 H 0.07 1.32 8.09 -51.93 -0.42 0.90 16 48 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 49 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 50 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 398.36 15.07 6.00 6.00 Total: -1.00 -32.40 398.36 -10.64 -43.03 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -7.76 Total: 9.71 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -4.37 Total: -8.43 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: -0.12 Total: -49.94 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.26 Total: -18.61 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.13 Total: 18.23 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.40 -10.64 -43.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578834601.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.471 kcal (2) G-P(sol) polarization free energy of solvation -32.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds