Wall clock time and date at job start Wed Apr 1 2020 03:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00203 * 2 1 4 4 H 1.48509 * 109.46979 * 275.82329 * 3 2 1 5 5 H 1.48500 * 109.47408 * 35.81799 * 3 2 1 6 6 H 1.48497 * 109.47295 * 155.82161 * 3 2 1 7 7 C 1.37876 * 119.99832 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00023 * 344.10325 * 7 2 1 9 9 C 1.50698 * 120.00267 * 164.10991 * 7 2 1 10 10 C 1.53007 * 115.54820 * 326.97404 * 9 7 2 11 11 N 1.46505 * 109.46979 * 281.40688 * 10 9 7 12 12 C 1.34770 * 119.99930 * 185.02298 * 11 10 9 13 13 O 1.21585 * 120.00105 * 4.99689 * 12 11 10 14 14 N 1.34780 * 120.00117 * 185.00361 * 12 11 10 15 15 C 1.47151 * 120.98001 * 355.03240 * 14 12 11 16 16 C 1.53305 * 108.38368 * 129.44503 * 15 14 12 17 17 O 1.42963 * 109.21861 * 52.30410 * 16 15 14 18 18 C 1.42959 * 114.16608 * 297.41793 * 17 16 15 19 19 H 1.09005 * 109.55407 * 302.63355 * 18 17 16 20 20 C 1.53003 * 109.51417 * 182.51076 * 18 17 16 21 21 C 1.50700 * 109.47134 * 65.24757 * 20 18 17 22 22 C 1.38228 * 120.00377 * 270.28251 * 21 20 18 23 23 C 1.38234 * 119.99909 * 180.24024 * 22 21 20 24 24 C 1.38232 * 120.00215 * 359.48174 * 23 22 21 25 25 C 1.38236 * 119.99773 * 0.26238 * 24 23 22 26 26 C 1.38236 * 120.00116 * 359.97438 * 25 24 23 27 27 C 1.47151 * 120.98574 * 175.01516 * 14 12 11 28 28 C 1.52993 * 117.52314 * 112.67280 * 9 7 2 29 29 C 1.53000 * 117.50320 * 181.30780 * 9 7 2 30 30 H 0.97005 * 120.00203 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.47544 * 161.40404 * 10 9 7 32 32 H 1.08999 * 109.47155 * 41.39576 * 10 9 7 33 33 H 0.96997 * 119.99892 * 5.01235 * 11 10 9 34 34 H 1.08997 * 109.68465 * 249.16679 * 15 14 12 35 35 H 1.09006 * 109.68156 * 9.72623 * 15 14 12 36 36 H 1.08995 * 109.51321 * 172.22933 * 16 15 14 37 37 H 1.09002 * 109.51062 * 292.33227 * 16 15 14 38 38 H 1.09005 * 109.46463 * 305.25767 * 20 18 17 39 39 H 1.08992 * 109.47107 * 185.25793 * 20 18 17 40 40 H 1.07998 * 120.00217 * 359.97438 * 22 21 20 41 41 H 1.08004 * 120.00342 * 179.75954 * 23 22 21 42 42 H 1.08005 * 120.00451 * 180.28090 * 24 23 22 43 43 H 1.07997 * 120.00194 * 180.02562 * 25 24 23 44 44 H 1.07996 * 120.00389 * 180.02562 * 26 25 24 45 45 H 1.08999 * 109.68210 * 110.83306 * 27 14 12 46 46 H 1.08999 * 109.71075 * 350.29339 * 27 14 12 47 47 H 1.08996 * 117.50170 * 214.97354 * 28 9 7 48 48 H 1.09005 * 117.49645 * 359.97438 * 28 9 7 49 49 H 1.09004 * 117.49823 * 359.96977 * 29 9 7 50 50 H 1.08993 * 117.50340 * 144.99690 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.3736 2.1174 -1.3929 5 1 1.5135 2.6141 0.8193 6 1 3.6027 1.4077 0.5734 7 6 2.0045 -1.1941 -0.0005 8 1 1.4954 -2.1116 0.2552 9 6 3.4682 -1.2189 -0.3579 10 6 3.9117 -0.1861 -1.3959 11 7 3.5400 -0.6492 -2.7353 12 6 3.9209 0.0528 -3.8208 13 8 4.6486 1.0188 -3.6956 14 7 3.4950 -0.3158 -5.0453 15 6 2.7038 -1.5419 -5.2347 16 6 1.4557 -1.1903 -6.0527 17 8 1.8507 -0.4997 -7.2405 18 6 2.5056 0.7483 -7.0015 19 1 1.8546 1.3952 -6.4134 20 6 2.8241 1.4225 -8.3376 21 6 1.5390 1.7810 -9.0382 22 6 0.9428 0.8748 -9.8951 23 6 -0.2334 1.2057 -10.5416 24 6 -0.8191 2.4385 -10.3230 25 6 -0.2257 3.3427 -9.4621 26 6 0.9531 3.0138 -8.8193 27 6 3.8073 0.4961 -6.2322 28 6 4.4604 -1.5778 0.7500 29 6 4.1696 -2.5787 -0.3700 30 1 -0.4851 0.8401 0.0004 31 1 4.9929 -0.0585 -1.3427 32 1 3.4229 0.7666 -1.1924 33 1 3.0199 -1.4611 -2.8407 34 1 3.2972 -2.2827 -5.7705 35 1 2.4066 -1.9406 -4.2647 36 1 0.9273 -2.1048 -6.3219 37 1 0.8002 -0.5519 -5.4604 38 1 3.3995 0.7386 -8.9615 39 1 3.4051 2.3272 -8.1586 40 1 1.3982 -0.0900 -10.0628 41 1 -0.6972 0.4992 -11.2141 42 1 -1.7405 2.6953 -10.8246 43 1 -0.6835 4.3058 -9.2909 44 1 1.4165 3.7200 -8.1463 45 1 4.5118 -0.0396 -6.8684 46 1 4.2413 1.4471 -5.9233 47 1 5.4291 -1.0782 0.7395 48 1 4.0545 -1.7956 1.7380 49 1 3.5723 -3.4553 -0.1191 50 1 4.9468 -2.7375 -1.1174 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578834601.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:18 Heat of formation + Delta-G solvation = -20.963795 kcal Electronic energy + Delta-G solvation = -30580.138149 eV Core-core repulsion = 26573.119700 eV Total energy + Delta-G solvation = -4007.018449 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.70767 -40.37220 -39.55409 -38.71372 -35.95526 -35.12743 -34.66847 -34.40320 -31.76888 -31.72475 -29.64244 -28.78035 -27.49368 -26.21440 -24.59948 -23.43327 -23.25989 -22.79724 -21.76463 -21.33214 -20.72213 -19.60764 -18.34338 -17.87258 -17.70945 -17.54093 -17.16689 -16.71677 -16.29469 -16.14900 -15.82854 -15.73797 -15.56662 -15.38028 -15.13913 -14.97150 -14.68610 -14.23427 -14.13579 -14.05162 -13.89750 -13.62300 -13.30028 -13.03580 -12.96005 -12.76830 -12.53565 -12.35413 -12.16342 -11.99730 -11.96314 -11.80406 -11.76734 -11.54834 -11.35869 -11.28487 -11.11783 -10.78161 -10.42807 -10.08977 -9.77488 -9.62338 -9.41869 -8.42444 -6.33395 0.46870 0.55153 1.22474 1.30506 1.36447 1.46134 2.01787 2.21570 2.64484 2.70473 2.92113 2.93854 3.47412 3.54027 3.84302 3.89158 3.93755 3.98314 4.02150 4.07046 4.11945 4.19955 4.24196 4.31828 4.36007 4.39518 4.43927 4.44433 4.56123 4.67078 4.67558 4.69298 4.77019 4.82023 4.87321 4.90835 4.96499 4.99991 5.19403 5.20608 5.22097 5.33902 5.44467 5.53392 5.61114 5.62242 5.66413 5.74838 5.79951 6.08129 6.17828 6.25128 6.64414 6.88062 7.25641 7.43005 8.72316 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014753 B = 0.002823 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.403447 B = 9916.846661 C =10513.498234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.042 3.958 3 Si 0.936 3.064 4 H -0.299 1.299 5 H -0.302 1.302 6 H -0.250 1.250 7 C -0.479 4.479 8 H 0.052 0.948 9 C -0.037 4.037 10 C 0.171 3.829 11 N -0.719 5.719 12 C 0.699 3.301 13 O -0.637 6.637 14 N -0.633 5.633 15 C 0.075 3.925 16 C 0.051 3.949 17 O -0.370 6.370 18 C 0.090 3.910 19 H 0.039 0.961 20 C -0.065 4.065 21 C -0.090 4.090 22 C -0.109 4.109 23 C -0.130 4.130 24 C -0.133 4.133 25 C -0.134 4.134 26 C -0.136 4.136 27 C 0.103 3.897 28 C -0.190 4.190 29 C -0.157 4.157 30 H 0.266 0.734 31 H 0.062 0.938 32 H 0.026 0.974 33 H 0.408 0.592 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.137 0.863 37 H 0.035 0.965 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.131 0.869 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.133 0.867 44 H 0.123 0.877 45 H 0.096 0.904 46 H 0.084 0.916 47 H 0.091 0.909 48 H 0.087 0.913 49 H 0.089 0.911 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.544 -1.015 -21.723 22.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.158 4.158 3 Si 0.768 3.232 4 H -0.228 1.228 5 H -0.231 1.231 6 H -0.174 1.174 7 C -0.517 4.517 8 H 0.070 0.930 9 C -0.038 4.038 10 C 0.047 3.953 11 N -0.375 5.375 12 C 0.401 3.599 13 O -0.519 6.519 14 N -0.371 5.371 15 C -0.048 4.048 16 C -0.027 4.027 17 O -0.289 6.289 18 C 0.031 3.969 19 H 0.057 0.943 20 C -0.102 4.102 21 C -0.090 4.090 22 C -0.127 4.127 23 C -0.148 4.148 24 C -0.151 4.151 25 C -0.152 4.152 26 C -0.154 4.154 27 C -0.020 4.020 28 C -0.229 4.229 29 C -0.194 4.194 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.043 0.957 33 H 0.247 0.753 34 H 0.122 0.878 35 H 0.108 0.892 36 H 0.154 0.846 37 H 0.053 0.947 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.149 0.851 41 H 0.157 0.843 42 H 0.156 0.844 43 H 0.151 0.849 44 H 0.141 0.859 45 H 0.114 0.886 46 H 0.103 0.897 47 H 0.109 0.891 48 H 0.105 0.895 49 H 0.107 0.893 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.850 -0.307 -21.769 22.109 hybrid contribution -0.375 0.873 0.826 1.259 sum 3.475 0.567 -20.942 21.236 Atomic orbital electron populations 1.70021 1.07615 1.27852 1.50670 1.25446 0.94846 1.01302 0.94239 0.86083 0.79912 0.80998 0.76206 1.22840 1.23055 1.17403 1.20434 0.91604 0.93938 1.45695 0.92953 1.19412 0.92772 0.95201 0.96456 1.20991 0.97856 0.95659 0.80746 1.45107 1.58559 1.29588 1.04272 1.16065 0.80338 0.82285 0.81211 1.90823 1.43354 1.31815 1.85928 1.47316 1.57337 1.27304 1.05127 1.22573 0.93620 0.86443 1.02160 1.23029 0.94668 0.98450 0.86541 1.87939 1.77355 1.33502 1.30077 1.22399 0.92159 0.85893 0.96399 0.94295 1.20588 0.94999 1.01458 0.93184 1.19876 0.97203 0.94278 0.97638 1.21238 0.95993 0.99197 0.96246 1.21457 0.95977 0.97227 1.00161 1.21448 1.00594 0.94273 0.98801 1.21391 0.95895 1.00489 0.97425 1.21306 0.96794 0.96978 1.00338 1.22254 0.97654 0.96930 0.85149 1.23176 0.99966 1.04850 0.94889 1.22821 1.02525 0.92765 1.01318 0.92479 0.91977 0.95702 0.75307 0.87764 0.89207 0.84569 0.94681 0.88185 0.88082 0.85078 0.84329 0.84427 0.84924 0.85856 0.88626 0.89724 0.89088 0.89493 0.89276 0.88338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.02 13.96 21.45 0.30 -54.72 16 2 C 0.04 2.34 5.40 84.65 0.46 2.80 16 3 Si 0.94 47.28 24.32 68.60 1.67 48.95 16 4 H -0.30 -15.94 6.87 99.48 0.68 -15.26 16 5 H -0.30 -15.16 7.11 99.48 0.71 -14.45 16 6 H -0.25 -11.84 6.80 99.48 0.68 -11.17 16 7 C -0.48 -25.32 9.56 25.60 0.24 -25.08 16 8 H 0.05 3.00 8.06 -2.91 -0.02 2.98 16 9 C -0.04 -1.61 1.30 -52.93 -0.07 -1.68 16 10 C 0.17 7.51 4.65 86.38 0.40 7.91 16 11 N -0.72 -28.19 5.45 -478.53 -2.61 -30.80 16 12 C 0.70 27.42 8.31 179.06 1.49 28.91 16 13 O -0.64 -29.49 15.82 -3.98 -0.06 -29.55 16 14 N -0.63 -19.00 3.02 -835.34 -2.52 -21.52 16 15 C 0.07 1.71 6.63 86.36 0.57 2.28 16 16 C 0.05 1.11 6.99 72.08 0.50 1.62 16 17 O -0.37 -8.40 9.88 -148.98 -1.47 -9.87 16 18 C 0.09 2.08 2.76 30.69 0.08 2.17 16 19 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 20 C -0.06 -1.15 5.06 29.85 0.15 -1.00 16 21 C -0.09 -1.80 4.97 -19.87 -0.10 -1.90 16 22 C -0.11 -2.06 9.40 22.27 0.21 -1.85 16 23 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 24 C -0.13 -2.31 10.05 22.27 0.22 -2.08 16 25 C -0.13 -2.52 10.05 22.27 0.22 -2.30 16 26 C -0.14 -2.79 9.70 22.27 0.22 -2.57 16 27 C 0.10 2.60 5.91 86.35 0.51 3.11 16 28 C -0.19 -7.17 9.88 30.59 0.30 -6.87 16 29 C -0.16 -5.50 9.93 30.59 0.30 -5.20 16 30 H 0.27 15.15 8.31 -92.70 -0.77 14.38 16 31 H 0.06 2.61 7.92 -2.39 -0.02 2.59 16 32 H 0.03 1.26 1.79 -2.39 0.00 1.26 16 33 H 0.41 14.46 5.99 -92.71 -0.56 13.90 16 34 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.09 2.14 5.66 -2.38 -0.01 2.12 16 36 H 0.14 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.10 1.46 8.09 -2.38 -0.02 1.44 16 39 H 0.10 1.55 8.09 -2.39 -0.02 1.53 16 40 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 41 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 42 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 43 H 0.13 2.01 8.06 -2.91 -0.02 1.98 16 44 H 0.12 2.31 8.06 -2.91 -0.02 2.29 16 45 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.08 2.42 7.12 -2.39 -0.02 2.41 16 47 H 0.09 3.08 8.09 -2.39 -0.02 3.06 16 48 H 0.09 3.31 8.14 -2.38 -0.02 3.29 16 49 H 0.09 3.07 8.14 -2.38 -0.02 3.05 16 50 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -70.93 398.36 1.58 -69.35 By element: Atomic # 1 Polarization: 31.61 SS G_CDS: 0.33 Total: 31.94 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: 5.95 Total: -3.77 kcal Atomic # 7 Polarization: -102.21 SS G_CDS: -4.83 Total: -107.04 kcal Atomic # 8 Polarization: -37.89 SS G_CDS: -1.54 Total: -39.42 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 1.67 Total: 48.95 kcal Total: -70.93 1.58 -69.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578834601.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.385 kcal (2) G-P(sol) polarization free energy of solvation -70.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds