Wall clock time and date at job start Wed Apr 1 2020 02:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00128 * 2 1 4 4 H 1.48499 * 109.47191 * 270.00456 * 3 2 1 5 5 H 1.48495 * 109.46771 * 30.00658 * 3 2 1 6 6 H 1.48501 * 109.46705 * 150.00480 * 3 2 1 7 7 C 1.37880 * 119.99753 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99903 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00154 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.88650 * 62.43217 * 9 7 2 11 11 C 1.55404 * 111.07375 * 186.21193 * 9 7 2 12 12 C 1.54318 * 102.83036 * 153.48794 * 11 9 7 13 13 N 1.47024 * 107.40369 * 337.97681 * 12 11 9 14 14 C 1.34778 * 125.65057 * 178.82620 * 13 12 11 15 15 O 1.21585 * 120.00117 * 180.02562 * 14 13 12 16 16 N 1.34771 * 119.99672 * 0.02562 * 14 13 12 17 17 C 1.46501 * 120.00048 * 179.97438 * 16 14 13 18 18 C 1.52993 * 109.47484 * 175.11111 * 17 16 14 19 19 C 1.50696 * 112.85262 * 294.01003 * 18 17 16 20 20 C 1.38236 * 120.00396 * 113.51173 * 19 18 17 21 21 C 1.38227 * 120.00250 * 179.81390 * 20 19 18 22 22 C 1.38237 * 120.00257 * 0.41463 * 21 20 19 23 23 C 1.38233 * 119.99511 * 359.81833 * 22 21 20 24 24 C 1.38235 * 120.00511 * 359.97438 * 23 22 21 25 25 C 1.53784 * 113.61625 * 162.70031 * 18 17 16 26 26 C 1.53782 * 87.08277 * 270.88498 * 25 18 17 27 27 C 1.53782 * 87.08058 * 334.56662 * 26 25 18 28 28 C 1.47427 * 108.70207 * 358.86583 * 13 12 11 29 29 H 0.96997 * 119.99869 * 359.97438 * 1 2 3 30 30 H 0.96703 * 113.99872 * 297.57410 * 10 9 7 31 31 H 1.08996 * 110.69356 * 35.19868 * 11 9 7 32 32 H 1.08999 * 110.85111 * 271.85252 * 11 9 7 33 33 H 1.08994 * 109.88396 * 218.47960 * 12 11 9 34 34 H 1.09001 * 109.88270 * 97.47041 * 12 11 9 35 35 H 0.97004 * 120.00550 * 0.02562 * 16 14 13 36 36 H 1.09004 * 109.47076 * 295.11696 * 17 16 14 37 37 H 1.09002 * 109.47100 * 55.11127 * 17 16 14 38 38 H 1.08002 * 119.99414 * 359.97438 * 20 19 18 39 39 H 1.08006 * 120.00193 * 180.20645 * 21 20 19 40 40 H 1.07993 * 120.00124 * 179.79116 * 22 21 20 41 41 H 1.08003 * 119.99885 * 179.97438 * 23 22 21 42 42 H 1.07997 * 120.00247 * 179.97438 * 24 23 22 43 43 H 1.09000 * 113.61322 * 25.43839 * 25 18 17 44 44 H 1.09001 * 113.61516 * 156.33448 * 25 18 17 45 45 H 1.08996 * 113.61643 * 220.01620 * 26 25 18 46 46 H 1.09006 * 113.61244 * 89.11699 * 26 25 18 47 47 H 1.08996 * 113.61247 * 270.88394 * 27 26 25 48 48 H 1.09001 * 113.61156 * 139.97923 * 27 26 25 49 49 H 1.08998 * 110.36529 * 142.96499 * 28 13 12 50 50 H 1.08996 * 110.36297 * 265.17978 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 0.4607 -2.6311 -1.1838 11 6 2.2201 -3.7039 0.1557 12 6 1.3261 -4.7807 0.8058 13 7 0.2063 -4.0871 1.4588 14 6 -0.8074 -4.6806 2.1196 15 8 -1.6838 -4.0044 2.6225 16 7 -0.8494 -6.0237 2.2230 17 6 -1.9509 -6.6689 2.9419 18 6 -1.8269 -8.1879 2.8079 19 6 -2.0201 -8.6683 1.3927 20 6 -0.9634 -9.2351 0.7048 21 6 -1.1416 -9.6792 -0.5920 22 6 -2.3742 -9.5489 -1.2040 23 6 -3.4296 -8.9778 -0.5178 24 6 -3.2526 -8.5375 0.7805 25 6 -2.6548 -8.9673 3.8434 26 6 -1.4255 -8.8947 4.7645 27 6 -0.5755 -8.7663 3.4894 28 6 0.3752 -2.6347 1.2701 29 1 -0.4850 0.8400 0.0004 30 1 -0.2253 -1.9558 -1.2759 31 1 3.0521 -3.4464 0.8111 32 1 2.5826 -4.0388 -0.8161 33 1 1.8981 -5.3399 1.5461 34 1 0.9469 -5.4587 0.0411 35 1 -0.1500 -6.5632 1.8222 36 1 -1.9086 -6.3923 3.9954 37 1 -2.9011 -6.3432 2.5186 38 1 0.0007 -9.3331 1.1816 39 1 -0.3169 -10.1251 -1.1282 40 1 -2.5125 -9.8929 -2.2183 41 1 -4.3925 -8.8756 -0.9961 42 1 -4.0770 -8.0909 1.3164 43 1 -3.5156 -8.4146 4.2196 44 1 -2.9055 -9.9804 3.5289 45 1 -1.2419 -9.8138 5.3210 46 1 -1.4041 -8.0057 5.3949 47 1 -0.2579 -9.7245 3.0782 48 1 0.2422 -8.0513 3.5799 49 1 -0.5924 -2.1570 1.1167 50 1 0.8816 -2.1969 2.1303 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591902537.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:47 Heat of formation + Delta-G solvation = -31.688255 kcal Electronic energy + Delta-G solvation = -31007.870244 eV Core-core repulsion = 27000.386748 eV Total energy + Delta-G solvation = -4007.483496 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.80888 -39.36791 -38.13917 -37.20493 -34.17736 -33.83127 -32.19355 -31.32432 -31.04855 -30.07667 -27.98184 -27.26184 -26.05755 -24.98821 -23.93844 -22.49423 -22.29745 -21.67149 -19.63494 -19.46671 -18.72775 -17.58691 -17.22728 -16.96353 -16.08608 -15.55167 -15.20541 -15.17454 -14.97202 -14.84138 -14.54933 -14.27538 -13.76411 -13.71864 -13.51304 -13.21389 -12.96370 -12.83765 -12.66621 -12.42023 -12.40025 -12.01484 -11.95712 -11.62935 -11.57955 -11.38131 -11.25126 -11.01430 -10.78913 -10.76142 -10.57039 -10.49754 -10.44340 -10.36780 -10.15601 -9.56404 -9.32651 -9.00622 -8.78977 -8.72848 -8.66089 -8.31127 -7.62682 -6.24022 -4.33920 1.26297 1.31636 3.15320 3.24034 3.30680 3.32955 3.67291 3.82226 4.22098 4.27315 4.32031 4.45036 4.56319 4.65494 4.71724 4.90505 4.93263 5.02815 5.03076 5.23222 5.41072 5.44805 5.44839 5.47503 5.49941 5.62030 5.67620 5.69394 5.73013 5.77013 5.84962 5.91599 5.94167 6.03579 6.05891 6.15129 6.16673 6.39840 6.43068 6.51209 6.54522 6.74060 6.83624 6.90697 6.92788 7.02797 7.27982 7.37027 7.71344 7.77931 8.07567 8.60008 8.70836 9.20491 9.33903 9.42156 10.82928 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015681 B = 0.002847 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.173822 B = 9833.380942 C =10523.805903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.071 3.929 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.538 4.538 8 H 0.066 0.934 9 C 0.248 3.752 10 O -0.583 6.583 11 C -0.116 4.116 12 C 0.107 3.893 13 N -0.628 5.628 14 C 0.717 3.283 15 O -0.599 6.599 16 N -0.746 5.746 17 C 0.170 3.830 18 C -0.058 4.058 19 C -0.061 4.061 20 C -0.118 4.118 21 C -0.118 4.118 22 C -0.125 4.125 23 C -0.117 4.117 24 C -0.110 4.110 25 C -0.119 4.119 26 C -0.141 4.141 27 C -0.133 4.133 28 C 0.115 3.885 29 H 0.270 0.730 30 H 0.381 0.619 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.392 0.608 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.073 0.927 44 H 0.086 0.914 45 H 0.069 0.931 46 H 0.084 0.916 47 H 0.087 0.913 48 H 0.073 0.927 49 H 0.084 0.916 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.017 -21.472 4.113 22.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.132 4.132 3 Si 0.730 3.270 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.576 4.576 8 H 0.084 0.916 9 C 0.208 3.792 10 O -0.391 6.391 11 C -0.154 4.154 12 C -0.017 4.017 13 N -0.365 5.365 14 C 0.419 3.581 15 O -0.478 6.478 16 N -0.403 5.403 17 C 0.045 3.955 18 C -0.059 4.059 19 C -0.061 4.061 20 C -0.136 4.136 21 C -0.136 4.136 22 C -0.143 4.143 23 C -0.135 4.135 24 C -0.128 4.128 25 C -0.157 4.157 26 C -0.178 4.178 27 C -0.171 4.171 28 C -0.007 4.007 29 H 0.080 0.920 30 H 0.230 0.770 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.226 0.774 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.092 0.908 44 H 0.104 0.896 45 H 0.087 0.913 46 H 0.102 0.898 47 H 0.105 0.895 48 H 0.091 0.909 49 H 0.103 0.897 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.501 -21.374 4.446 22.110 hybrid contribution 0.374 1.134 -0.211 1.212 sum -3.127 -20.240 4.235 20.914 Atomic orbital electron populations 1.69725 1.05967 1.27850 1.49427 1.25080 0.95025 0.99714 0.93395 0.86416 0.79770 0.82526 0.78254 1.20430 1.21028 1.19722 1.21453 0.93605 0.90084 1.52500 0.91581 1.19683 0.86619 0.91460 0.81455 1.86106 1.51500 1.57141 1.44351 1.22623 0.97490 0.95240 1.00006 1.21888 0.88377 0.96004 0.95416 1.47908 1.23381 1.09687 1.55498 1.15489 0.81829 0.81306 0.79504 1.90879 1.39637 1.63313 1.53938 1.44984 1.28766 1.05273 1.61288 1.20794 0.90389 0.87660 0.96610 1.21069 0.98870 0.94686 0.91266 1.19577 0.93716 0.98063 0.94763 1.21047 0.98511 0.99326 0.94746 1.21124 0.97315 1.00031 0.95103 1.21136 0.93398 0.99999 0.99787 1.21134 0.99034 0.98638 0.94713 1.20968 0.97102 0.99600 0.95118 1.22908 0.97240 1.00251 0.95262 1.22827 0.96280 1.02342 0.96352 1.23051 0.96380 1.01323 0.96328 1.23099 1.02461 0.75709 0.99407 0.92027 0.76967 0.90463 0.90850 0.93364 0.92809 0.77387 0.91586 0.91361 0.86010 0.86185 0.86321 0.86215 0.86218 0.90836 0.89586 0.91254 0.89779 0.89500 0.90863 0.89731 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.09 10.69 55.43 0.59 -23.50 16 2 C 0.07 1.87 5.29 -17.82 -0.09 1.78 16 3 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.54 -14.09 8.28 -34.44 -0.29 -14.38 16 8 H 0.07 1.69 7.79 -52.48 -0.41 1.28 16 9 C 0.25 6.07 0.87 -89.49 -0.08 5.99 16 10 O -0.58 -15.04 13.16 -35.23 -0.46 -15.51 16 11 C -0.12 -2.31 6.15 -24.76 -0.15 -2.46 16 12 C 0.11 1.91 6.14 -3.07 -0.02 1.89 16 13 N -0.63 -13.35 3.33 -176.24 -0.59 -13.94 16 14 C 0.72 15.00 8.49 -86.92 -0.74 14.27 16 15 O -0.60 -14.85 16.60 5.29 0.09 -14.76 16 16 N -0.75 -11.66 5.14 -65.23 -0.34 -11.99 16 17 C 0.17 2.25 4.85 -4.04 -0.02 2.23 16 18 C -0.06 -0.57 0.63 -154.85 -0.10 -0.67 16 19 C -0.06 -0.65 4.67 -104.62 -0.49 -1.14 16 20 C -0.12 -1.19 9.05 -39.59 -0.36 -1.55 16 21 C -0.12 -1.17 10.05 -39.59 -0.40 -1.56 16 22 C -0.13 -1.26 10.05 -39.58 -0.40 -1.66 16 23 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 24 C -0.11 -1.21 9.33 -39.58 -0.37 -1.58 16 25 C -0.12 -0.96 7.10 -25.92 -0.18 -1.15 16 26 C -0.14 -1.09 7.73 -25.92 -0.20 -1.29 16 27 C -0.13 -1.13 6.07 -25.92 -0.16 -1.28 16 28 C 0.12 2.84 5.39 -2.53 -0.01 2.82 16 29 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.38 10.13 7.56 45.56 0.34 10.47 16 31 H 0.08 1.45 8.03 -51.93 -0.42 1.03 16 32 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.39 5.40 7.06 -40.82 -0.29 5.12 16 36 H 0.07 0.88 7.31 -51.93 -0.38 0.50 16 37 H 0.07 1.01 7.95 -51.93 -0.41 0.59 16 38 H 0.12 1.04 6.44 -52.49 -0.34 0.70 16 39 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 40 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 41 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 42 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 43 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 44 H 0.09 0.65 8.10 -51.93 -0.42 0.23 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.08 0.69 7.61 -51.93 -0.40 0.30 16 47 H 0.09 0.65 6.83 -51.93 -0.35 0.29 16 48 H 0.07 0.67 7.75 -51.93 -0.40 0.27 16 49 H 0.08 2.36 7.33 -51.93 -0.38 1.98 16 50 H 0.06 1.43 8.03 -51.93 -0.42 1.01 16 LS Contribution 398.96 15.07 6.01 6.01 Total: -1.00 -30.96 398.96 -11.37 -42.33 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: -7.21 Total: 17.25 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -4.45 Total: -1.37 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: -0.33 Total: -49.42 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -0.38 Total: -30.27 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -30.96 -11.37 -42.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591902537.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.638 kcal (2) G-P(sol) polarization free energy of solvation -30.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds