Wall clock time and date at job start Wed Apr 1 2020 02:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00128 * 2 1 4 4 H 1.48499 * 109.47191 * 270.00456 * 3 2 1 5 5 H 1.48495 * 109.46771 * 30.00658 * 3 2 1 6 6 H 1.48501 * 109.46705 * 150.00480 * 3 2 1 7 7 C 1.37880 * 119.99753 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99903 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00154 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.88650 * 62.43217 * 9 7 2 11 11 C 1.55404 * 111.07375 * 186.21193 * 9 7 2 12 12 C 1.54318 * 102.83036 * 153.48794 * 11 9 7 13 13 N 1.47024 * 107.40369 * 337.97681 * 12 11 9 14 14 C 1.34778 * 125.65057 * 178.82620 * 13 12 11 15 15 O 1.21585 * 120.00117 * 180.02562 * 14 13 12 16 16 N 1.34771 * 119.99672 * 0.02562 * 14 13 12 17 17 C 1.46501 * 120.00048 * 179.97438 * 16 14 13 18 18 C 1.52993 * 109.47484 * 175.11111 * 17 16 14 19 19 C 1.50696 * 112.85262 * 294.01003 * 18 17 16 20 20 C 1.38236 * 120.00396 * 113.51173 * 19 18 17 21 21 C 1.38227 * 120.00250 * 179.81390 * 20 19 18 22 22 C 1.38237 * 120.00257 * 0.41463 * 21 20 19 23 23 C 1.38233 * 119.99511 * 359.81833 * 22 21 20 24 24 C 1.38235 * 120.00511 * 359.97438 * 23 22 21 25 25 C 1.53784 * 113.61625 * 162.70031 * 18 17 16 26 26 C 1.53782 * 87.08277 * 270.88498 * 25 18 17 27 27 C 1.53782 * 87.08058 * 334.56662 * 26 25 18 28 28 C 1.47427 * 108.70207 * 358.86583 * 13 12 11 29 29 H 0.96997 * 119.99869 * 359.97438 * 1 2 3 30 30 H 0.96703 * 113.99872 * 297.57410 * 10 9 7 31 31 H 1.08996 * 110.69356 * 35.19868 * 11 9 7 32 32 H 1.08999 * 110.85111 * 271.85252 * 11 9 7 33 33 H 1.08994 * 109.88396 * 218.47960 * 12 11 9 34 34 H 1.09001 * 109.88270 * 97.47041 * 12 11 9 35 35 H 0.97004 * 120.00550 * 0.02562 * 16 14 13 36 36 H 1.09004 * 109.47076 * 295.11696 * 17 16 14 37 37 H 1.09002 * 109.47100 * 55.11127 * 17 16 14 38 38 H 1.08002 * 119.99414 * 359.97438 * 20 19 18 39 39 H 1.08006 * 120.00193 * 180.20645 * 21 20 19 40 40 H 1.07993 * 120.00124 * 179.79116 * 22 21 20 41 41 H 1.08003 * 119.99885 * 179.97438 * 23 22 21 42 42 H 1.07997 * 120.00247 * 179.97438 * 24 23 22 43 43 H 1.09000 * 113.61322 * 25.43839 * 25 18 17 44 44 H 1.09001 * 113.61516 * 156.33448 * 25 18 17 45 45 H 1.08996 * 113.61643 * 220.01620 * 26 25 18 46 46 H 1.09006 * 113.61244 * 89.11699 * 26 25 18 47 47 H 1.08996 * 113.61247 * 270.88394 * 27 26 25 48 48 H 1.09001 * 113.61156 * 139.97923 * 27 26 25 49 49 H 1.08998 * 110.36529 * 142.96499 * 28 13 12 50 50 H 1.08996 * 110.36297 * 265.17978 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 0.4607 -2.6311 -1.1838 11 6 2.2201 -3.7039 0.1557 12 6 1.3261 -4.7807 0.8058 13 7 0.2063 -4.0871 1.4588 14 6 -0.8074 -4.6806 2.1196 15 8 -1.6838 -4.0044 2.6225 16 7 -0.8494 -6.0237 2.2230 17 6 -1.9509 -6.6689 2.9419 18 6 -1.8269 -8.1879 2.8079 19 6 -2.0201 -8.6683 1.3927 20 6 -0.9634 -9.2351 0.7048 21 6 -1.1416 -9.6792 -0.5920 22 6 -2.3742 -9.5489 -1.2040 23 6 -3.4296 -8.9778 -0.5178 24 6 -3.2526 -8.5375 0.7805 25 6 -2.6548 -8.9673 3.8434 26 6 -1.4255 -8.8947 4.7645 27 6 -0.5755 -8.7663 3.4894 28 6 0.3752 -2.6347 1.2701 29 1 -0.4850 0.8400 0.0004 30 1 -0.2253 -1.9558 -1.2759 31 1 3.0521 -3.4464 0.8111 32 1 2.5826 -4.0388 -0.8161 33 1 1.8981 -5.3399 1.5461 34 1 0.9469 -5.4587 0.0411 35 1 -0.1500 -6.5632 1.8222 36 1 -1.9086 -6.3923 3.9954 37 1 -2.9011 -6.3432 2.5186 38 1 0.0007 -9.3331 1.1816 39 1 -0.3169 -10.1251 -1.1282 40 1 -2.5125 -9.8929 -2.2183 41 1 -4.3925 -8.8756 -0.9961 42 1 -4.0770 -8.0909 1.3164 43 1 -3.5156 -8.4146 4.2196 44 1 -2.9055 -9.9804 3.5289 45 1 -1.2419 -9.8138 5.3210 46 1 -1.4041 -8.0057 5.3949 47 1 -0.2579 -9.7245 3.0782 48 1 0.2422 -8.0513 3.5799 49 1 -0.5924 -2.1570 1.1167 50 1 0.8816 -2.1969 2.1303 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591902537.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:46 Heat of formation + Delta-G solvation = -50.647901 kcal Electronic energy + Delta-G solvation = -31008.692396 eV Core-core repulsion = 27000.386748 eV Total energy + Delta-G solvation = -4008.305648 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.75317 -40.86590 -39.14579 -38.71907 -36.03087 -35.23988 -34.22506 -32.17151 -31.79854 -31.69825 -29.64187 -28.58100 -26.89221 -26.55192 -25.00200 -23.98372 -23.12889 -22.39187 -21.48035 -20.98503 -19.75977 -19.11620 -18.69641 -18.07183 -17.34332 -16.95082 -16.87482 -16.43054 -16.26555 -16.00605 -15.69243 -15.45418 -15.10799 -14.94056 -14.77458 -14.58324 -14.28344 -14.05899 -13.90649 -13.64396 -13.49656 -13.31635 -13.18593 -13.11511 -12.83429 -12.74759 -12.52109 -12.32579 -12.30652 -12.22806 -12.08445 -11.96031 -11.48199 -11.34242 -11.21604 -11.17538 -11.08165 -10.65782 -10.32232 -10.17615 -9.77041 -9.55210 -9.31630 -8.23396 -6.41015 0.48848 0.54649 1.42486 1.44477 1.54402 1.67860 2.16436 2.39068 2.89647 3.02438 3.06007 3.49547 3.60134 3.78899 3.81229 3.84526 3.94739 4.09022 4.18388 4.18895 4.20332 4.32281 4.33495 4.51637 4.54264 4.60337 4.65552 4.71987 4.76973 4.79633 4.87718 4.88765 5.07234 5.09388 5.10449 5.10997 5.17164 5.19600 5.28678 5.30517 5.37931 5.46521 5.49446 5.51930 5.64779 5.67470 5.74277 5.76565 6.05872 6.16005 6.19341 6.66581 7.06759 7.28051 7.35694 7.57709 8.81729 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015681 B = 0.002847 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.173822 B = 9833.380942 C =10523.805903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.025 3.975 3 Si 0.964 3.036 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.556 4.556 8 H 0.070 0.930 9 C 0.232 3.768 10 O -0.587 6.587 11 C -0.109 4.109 12 C 0.109 3.891 13 N -0.634 5.634 14 C 0.710 3.290 15 O -0.646 6.646 16 N -0.722 5.722 17 C 0.170 3.830 18 C -0.056 4.056 19 C -0.071 4.071 20 C -0.124 4.124 21 C -0.124 4.124 22 C -0.135 4.135 23 C -0.131 4.131 24 C -0.129 4.129 25 C -0.113 4.113 26 C -0.137 4.137 27 C -0.127 4.127 28 C 0.131 3.869 29 H 0.268 0.732 30 H 0.372 0.628 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.406 0.594 36 H 0.064 0.936 37 H 0.048 0.952 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.135 0.865 41 H 0.130 0.870 42 H 0.117 0.883 43 H 0.071 0.929 44 H 0.096 0.904 45 H 0.085 0.915 46 H 0.076 0.924 47 H 0.104 0.896 48 H 0.069 0.931 49 H 0.041 0.959 50 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.020 -23.774 4.173 24.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.176 4.176 3 Si 0.790 3.210 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.594 4.594 8 H 0.088 0.912 9 C 0.192 3.808 10 O -0.395 6.395 11 C -0.147 4.147 12 C -0.013 4.013 13 N -0.370 5.370 14 C 0.412 3.588 15 O -0.529 6.529 16 N -0.379 5.379 17 C 0.046 3.954 18 C -0.056 4.056 19 C -0.071 4.071 20 C -0.142 4.142 21 C -0.142 4.142 22 C -0.153 4.153 23 C -0.149 4.149 24 C -0.147 4.147 25 C -0.151 4.151 26 C -0.174 4.174 27 C -0.164 4.164 28 C 0.007 3.993 29 H 0.078 0.922 30 H 0.220 0.780 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.242 0.758 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.158 0.842 39 H 0.159 0.841 40 H 0.153 0.847 41 H 0.148 0.852 42 H 0.135 0.865 43 H 0.090 0.910 44 H 0.114 0.886 45 H 0.104 0.896 46 H 0.095 0.905 47 H 0.122 0.878 48 H 0.087 0.913 49 H 0.059 0.941 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.469 -23.751 4.497 24.218 hybrid contribution -0.300 1.819 -0.251 1.860 sum -1.769 -21.933 4.246 22.410 Atomic orbital electron populations 1.69857 1.07254 1.28334 1.50064 1.25848 0.95716 1.02904 0.93085 0.85454 0.78741 0.78586 0.78248 1.20045 1.21271 1.18775 1.21801 0.93987 0.91181 1.52429 0.91170 1.19929 0.87149 0.93182 0.80577 1.86098 1.51403 1.56765 1.45217 1.22630 0.97137 0.93674 1.01274 1.22068 0.87256 0.95403 0.96595 1.47854 1.24601 1.08615 1.55927 1.15730 0.81184 0.82702 0.79205 1.90841 1.41371 1.64821 1.55843 1.44797 1.29409 1.03274 1.60399 1.20903 0.88632 0.90034 0.95877 1.20960 1.00900 0.92069 0.91672 1.19692 0.93828 0.98506 0.95067 1.21306 0.99003 0.98934 0.94915 1.21453 0.97834 0.99686 0.95259 1.21438 0.93459 0.99758 1.00655 1.21374 0.99942 0.98848 0.94774 1.21135 0.97608 1.00296 0.95689 1.22917 0.97303 1.00350 0.94561 1.22811 0.95608 1.02850 0.96176 1.23073 0.95418 1.01784 0.96162 1.22623 0.99915 0.77701 0.99050 0.92250 0.77994 0.89116 0.89638 0.89244 0.91475 0.75832 0.91739 0.93388 0.84160 0.84143 0.84687 0.85245 0.86474 0.91025 0.88554 0.89605 0.90521 0.87805 0.91262 0.94054 0.94303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.03 10.69 21.45 0.23 -50.80 16 2 C 0.03 1.34 5.29 84.66 0.45 1.79 16 3 Si 0.96 42.16 29.54 68.60 2.03 44.19 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 7 C -0.56 -29.13 8.28 25.60 0.21 -28.92 16 8 H 0.07 3.53 7.79 -2.91 -0.02 3.51 16 9 C 0.23 11.36 0.87 -10.06 -0.01 11.35 16 10 O -0.59 -30.75 13.16 -148.98 -1.96 -32.71 16 11 C -0.11 -4.14 6.15 31.87 0.20 -3.94 16 12 C 0.11 3.61 6.14 86.73 0.53 4.14 16 13 N -0.63 -26.78 3.33 -829.77 -2.76 -29.54 16 14 C 0.71 29.94 8.49 179.06 1.52 31.46 16 15 O -0.65 -33.28 16.60 -3.98 -0.07 -33.35 16 16 N -0.72 -21.90 5.14 -478.54 -2.46 -24.36 16 17 C 0.17 4.45 4.85 86.38 0.42 4.87 16 18 C -0.06 -1.01 0.63 -52.40 -0.03 -1.04 16 19 C -0.07 -1.40 4.67 -19.87 -0.09 -1.49 16 20 C -0.12 -2.17 9.05 22.27 0.20 -1.97 16 21 C -0.12 -2.15 10.05 22.27 0.22 -1.93 16 22 C -0.14 -2.50 10.05 22.27 0.22 -2.27 16 23 C -0.13 -2.66 10.05 22.27 0.22 -2.44 16 24 C -0.13 -2.79 9.33 22.27 0.21 -2.58 16 25 C -0.11 -1.65 7.10 31.12 0.22 -1.43 16 26 C -0.14 -1.81 7.73 31.12 0.24 -1.57 16 27 C -0.13 -1.78 6.07 31.12 0.19 -1.59 16 28 C 0.13 6.62 5.39 86.86 0.47 7.09 16 29 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 30 H 0.37 20.54 7.56 -74.06 -0.56 19.98 16 31 H 0.09 3.17 8.03 -2.39 -0.02 3.15 16 32 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 33 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.41 10.19 7.06 -92.71 -0.65 9.54 16 36 H 0.06 1.73 7.31 -2.38 -0.02 1.71 16 37 H 0.05 1.46 7.95 -2.39 -0.02 1.44 16 38 H 0.14 1.86 6.44 -2.91 -0.02 1.84 16 39 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 40 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 41 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 42 H 0.12 2.46 8.06 -2.91 -0.02 2.43 16 43 H 0.07 1.07 8.10 -2.39 -0.02 1.05 16 44 H 0.10 1.25 8.10 -2.39 -0.02 1.23 16 45 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.08 1.14 7.61 -2.38 -0.02 1.12 16 47 H 0.10 1.15 6.83 -2.39 -0.02 1.13 16 48 H 0.07 1.05 7.75 -2.39 -0.02 1.03 16 49 H 0.04 2.43 7.33 -2.39 -0.02 2.41 16 50 H 0.04 2.05 8.03 -2.39 -0.02 2.03 16 Total: -1.00 -69.20 398.96 0.14 -69.06 By element: Atomic # 1 Polarization: 48.25 SS G_CDS: -0.26 Total: 47.99 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: 5.39 Total: 9.52 kcal Atomic # 7 Polarization: -99.71 SS G_CDS: -4.99 Total: -104.70 kcal Atomic # 8 Polarization: -64.03 SS G_CDS: -2.03 Total: -66.06 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -69.20 0.14 -69.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591902537.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.410 kcal (2) G-P(sol) polarization free energy of solvation -69.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds