Wall clock time and date at job start Wed Apr 1 2020 02:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99800 * 2 1 4 4 H 1.48494 * 109.47238 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47387 * 300.00262 * 3 2 1 6 6 H 1.48499 * 109.46942 * 60.00284 * 3 2 1 7 7 C 1.37869 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00267 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00130 * 359.97438 * 7 2 1 10 10 O 1.42898 * 110.88692 * 300.69880 * 9 7 2 11 11 C 1.55154 * 111.03980 * 176.79107 * 9 7 2 12 12 C 1.54325 * 102.94732 * 206.41097 * 11 9 7 13 13 N 1.47021 * 107.26943 * 22.19234 * 12 11 9 14 14 C 1.34771 * 125.64875 * 181.09450 * 13 12 11 15 15 O 1.21593 * 119.99932 * 179.97438 * 14 13 12 16 16 N 1.34779 * 120.00153 * 359.96046 * 14 13 12 17 17 C 1.46501 * 120.00160 * 179.97438 * 16 14 13 18 18 C 1.52995 * 109.47011 * 174.93500 * 17 16 14 19 19 C 1.50704 * 112.85127 * 296.29053 * 18 17 16 20 20 C 1.38233 * 119.99734 * 113.64933 * 19 18 17 21 21 C 1.38240 * 119.99642 * 179.74743 * 20 19 18 22 22 C 1.38234 * 119.99981 * 0.52949 * 21 20 19 23 23 C 1.38236 * 120.00021 * 359.74277 * 22 21 20 24 24 C 1.38233 * 119.99924 * 359.97438 * 23 22 21 25 25 C 1.53776 * 113.61540 * 165.09699 * 18 17 16 26 26 C 1.54050 * 86.98662 * 270.83712 * 25 18 17 27 27 C 1.53781 * 113.61493 * 67.48733 * 18 17 16 28 28 C 1.47426 * 108.70269 * 1.06182 * 13 12 11 29 29 H 0.97007 * 120.00188 * 359.97438 * 1 2 3 30 30 H 0.96700 * 113.99628 * 62.42672 * 10 9 7 31 31 H 1.09001 * 110.72177 * 324.78020 * 11 9 7 32 32 H 1.09007 * 110.71873 * 88.04780 * 11 9 7 33 33 H 1.09008 * 109.88119 * 262.78307 * 12 11 9 34 34 H 1.08992 * 109.88588 * 141.61309 * 12 11 9 35 35 H 0.97003 * 119.99832 * 0.02562 * 16 14 13 36 36 H 1.09001 * 109.47399 * 294.93769 * 17 16 14 37 37 H 1.09001 * 109.46772 * 54.93953 * 17 16 14 38 38 H 1.07996 * 120.00208 * 359.97438 * 20 19 18 39 39 H 1.08003 * 120.00149 * 180.29731 * 21 20 19 40 40 H 1.08003 * 120.00244 * 179.77315 * 22 21 20 41 41 H 1.08005 * 120.00100 * 179.97438 * 23 22 21 42 42 H 1.08005 * 119.99686 * 179.97438 * 24 23 22 43 43 H 1.09002 * 113.61287 * 25.43161 * 25 18 17 44 44 H 1.08999 * 113.61951 * 156.33412 * 25 18 17 45 45 H 1.08994 * 113.62337 * 220.01925 * 26 25 18 46 46 H 1.09005 * 113.68990 * 89.12059 * 26 25 18 47 47 H 1.08996 * 113.61202 * 203.66224 * 27 18 17 48 48 H 1.08990 * 113.61307 * 334.48226 * 27 18 17 49 49 H 1.09003 * 110.36600 * 217.03028 * 28 13 12 50 50 H 1.09000 * 110.45933 * 94.75318 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.4065 -2.5998 1.1478 11 6 2.2247 -3.7043 -0.0822 12 6 1.3623 -4.8015 -0.7411 13 7 0.2744 -4.1263 -1.4637 14 6 -0.7076 -4.7380 -2.1549 15 8 -1.5594 -4.0761 -2.7159 16 7 -0.7454 -6.0835 -2.2245 17 6 -1.8133 -6.7485 -2.9753 18 6 -1.5550 -8.2562 -3.0022 19 6 -0.2875 -8.6199 -3.7318 20 6 0.7742 -9.1719 -3.0397 21 6 1.9349 -9.5103 -3.7099 22 6 2.0379 -9.2867 -5.0702 23 6 0.9782 -8.7296 -5.7612 24 6 -0.1846 -8.3966 -5.0921 25 6 -2.7760 -9.0826 -3.4392 26 6 -3.1779 -9.1242 -1.9527 27 6 -1.6880 -8.9287 -1.6257 28 6 0.4353 -2.6693 -1.3064 29 1 -0.4851 0.8401 0.0004 30 1 -0.2826 -1.9227 1.1897 31 1 3.0852 -3.4634 -0.7064 32 1 2.5435 -4.0108 0.9141 33 1 0.9476 -5.4569 0.0249 34 1 1.9678 -5.3799 -1.4388 35 1 -0.0660 -6.6116 -1.7767 36 1 -2.7718 -6.5525 -2.4947 37 1 -1.8332 -6.3650 -3.9954 38 1 0.6955 -9.3420 -1.9762 39 1 2.7627 -9.9460 -3.1701 40 1 2.9461 -9.5478 -5.5932 41 1 1.0588 -8.5545 -6.8239 42 1 -1.0124 -7.9609 -5.6320 43 1 -3.4753 -8.5301 -4.0668 44 1 -2.5184 -10.0591 -3.8493 45 1 -3.5720 -10.0890 -1.6336 46 1 -3.8058 -8.2879 -1.6451 47 1 -1.1334 -9.8632 -1.5409 48 1 -1.5081 -8.2524 -0.7902 49 1 -0.5382 -2.1883 -1.2111 50 1 0.9823 -2.2529 -2.1523 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591902538.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:50 Heat of formation + Delta-G solvation = -31.984515 kcal Electronic energy + Delta-G solvation = -30951.594411 eV Core-core repulsion = 26944.098068 eV Total energy + Delta-G solvation = -4007.496343 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.81433 -39.37950 -38.15857 -37.21605 -34.18660 -33.84111 -32.16246 -31.34587 -31.09028 -30.09200 -27.99677 -27.27465 -26.05270 -24.99257 -23.95272 -22.51687 -22.32220 -21.68756 -19.62680 -19.47574 -18.73789 -17.59052 -17.26331 -16.97416 -16.08088 -15.59996 -15.17532 -15.14862 -15.03630 -14.86358 -14.49757 -14.33999 -13.79670 -13.70836 -13.54439 -13.23221 -13.00184 -12.77949 -12.71274 -12.44855 -12.40222 -12.05038 -11.92445 -11.62923 -11.58496 -11.37868 -11.28179 -11.03509 -10.78674 -10.75382 -10.56626 -10.50832 -10.42969 -10.37176 -10.15067 -9.57416 -9.35607 -9.05213 -8.82336 -8.74382 -8.65872 -8.31284 -7.63235 -6.25058 -4.34198 1.21857 1.26927 3.14899 3.22816 3.30705 3.34018 3.63018 3.81408 4.21336 4.27165 4.31518 4.45026 4.57021 4.64283 4.70336 4.86026 4.89997 4.98574 5.02300 5.22697 5.38556 5.42948 5.45099 5.46997 5.48888 5.61773 5.68949 5.70105 5.73418 5.78041 5.84349 5.88558 5.91246 6.02395 6.05617 6.15114 6.16901 6.36114 6.38325 6.47931 6.54131 6.73788 6.83141 6.86237 6.91539 7.01556 7.26349 7.36093 7.70111 7.77739 8.06842 8.59316 8.70411 9.19776 9.34515 9.44385 10.82386 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015706 B = 0.002791 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.353961 B =10029.725674 C =10699.804187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.071 3.929 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.537 4.537 8 H 0.067 0.933 9 C 0.249 3.751 10 O -0.583 6.583 11 C -0.116 4.116 12 C 0.107 3.893 13 N -0.628 5.628 14 C 0.717 3.283 15 O -0.599 6.599 16 N -0.746 5.746 17 C 0.170 3.830 18 C -0.059 4.059 19 C -0.060 4.060 20 C -0.119 4.119 21 C -0.118 4.118 22 C -0.126 4.126 23 C -0.118 4.118 24 C -0.110 4.110 25 C -0.119 4.119 26 C -0.141 4.141 27 C -0.134 4.134 28 C 0.113 3.887 29 H 0.269 0.731 30 H 0.383 0.617 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.393 0.607 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.069 0.931 46 H 0.084 0.916 47 H 0.086 0.914 48 H 0.074 0.926 49 H 0.082 0.918 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.646 -21.472 -6.925 22.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.575 4.575 8 H 0.085 0.915 9 C 0.208 3.792 10 O -0.392 6.392 11 C -0.154 4.154 12 C -0.017 4.017 13 N -0.364 5.364 14 C 0.419 3.581 15 O -0.478 6.478 16 N -0.403 5.403 17 C 0.046 3.954 18 C -0.059 4.059 19 C -0.060 4.060 20 C -0.137 4.137 21 C -0.136 4.136 22 C -0.144 4.144 23 C -0.136 4.136 24 C -0.128 4.128 25 C -0.157 4.157 26 C -0.178 4.178 27 C -0.171 4.171 28 C -0.009 4.009 29 H 0.079 0.921 30 H 0.233 0.767 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.226 0.774 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.141 0.859 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.092 0.908 44 H 0.104 0.896 45 H 0.088 0.912 46 H 0.103 0.897 47 H 0.105 0.895 48 H 0.092 0.908 49 H 0.101 0.899 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.112 -21.383 -7.263 22.610 hybrid contribution 0.515 1.137 -0.054 1.249 sum -0.598 -20.246 -7.318 21.536 Atomic orbital electron populations 1.69674 1.05998 1.27772 1.49684 1.25073 0.95022 0.99738 0.93374 0.86358 0.80035 0.82809 0.77739 1.19606 1.20788 1.20775 1.21504 0.93648 0.90098 1.52247 0.91515 1.19625 0.86262 0.91540 0.81775 1.86083 1.48963 1.58000 1.46138 1.22590 0.97695 0.95050 1.00045 1.21900 0.88981 0.96185 0.94607 1.47887 1.26456 1.09456 1.52622 1.15494 0.81622 0.81240 0.79771 1.90881 1.40734 1.64321 1.51872 1.44979 1.31971 1.05090 1.58257 1.20793 0.90272 0.87563 0.96820 1.21080 0.93271 0.94803 0.96785 1.19595 0.94707 0.98078 0.93638 1.21075 0.93070 0.99608 0.99904 1.21130 0.97707 1.00138 0.94622 1.21134 0.98680 0.99931 0.94670 1.21132 0.93555 0.99008 0.99894 1.20972 0.98047 0.99711 0.94063 1.22953 0.95810 0.99826 0.97076 1.22873 0.96504 1.02321 0.96098 1.23050 0.97045 1.00819 0.96205 1.23125 1.02382 0.75633 0.99738 0.92051 0.76683 0.90495 0.90821 0.92806 0.93289 0.77372 0.91518 0.91401 0.85928 0.86175 0.86350 0.86246 0.86217 0.90824 0.89601 0.91244 0.89718 0.89531 0.90755 0.89938 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.07 10.72 55.43 0.59 -23.47 16 2 C 0.07 1.87 5.30 -17.82 -0.09 1.78 16 3 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.54 -14.05 8.26 -34.44 -0.28 -14.34 16 8 H 0.07 1.71 7.78 -52.49 -0.41 1.30 16 9 C 0.25 6.07 0.87 -89.62 -0.08 5.99 16 10 O -0.58 -15.00 13.15 -35.23 -0.46 -15.47 16 11 C -0.12 -2.31 6.13 -24.90 -0.15 -2.47 16 12 C 0.11 1.91 6.15 -3.06 -0.02 1.89 16 13 N -0.63 -13.32 3.33 -176.23 -0.59 -13.90 16 14 C 0.72 14.97 8.49 -86.92 -0.74 14.23 16 15 O -0.60 -14.82 16.59 5.28 0.09 -14.73 16 16 N -0.75 -11.63 5.18 -65.23 -0.34 -11.97 16 17 C 0.17 2.25 4.83 -4.04 -0.02 2.23 16 18 C -0.06 -0.57 0.62 -154.85 -0.10 -0.67 16 19 C -0.06 -0.62 4.57 -104.62 -0.48 -1.09 16 20 C -0.12 -1.14 9.05 -39.58 -0.36 -1.50 16 21 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 22 C -0.13 -1.18 10.05 -39.58 -0.40 -1.58 16 23 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 24 C -0.11 -1.15 9.36 -39.58 -0.37 -1.52 16 25 C -0.12 -0.96 7.12 -25.78 -0.18 -1.15 16 26 C -0.14 -1.13 7.74 -25.78 -0.20 -1.33 16 27 C -0.13 -1.16 6.13 -25.92 -0.16 -1.32 16 28 C 0.11 2.78 5.50 -2.53 -0.01 2.77 16 29 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.38 10.19 7.32 45.56 0.33 10.52 16 31 H 0.08 1.45 8.03 -51.93 -0.42 1.04 16 32 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.39 5.41 7.22 -40.82 -0.29 5.11 16 36 H 0.07 0.91 7.31 -51.93 -0.38 0.53 16 37 H 0.07 0.97 8.00 -51.93 -0.42 0.56 16 38 H 0.12 1.02 6.44 -52.49 -0.34 0.68 16 39 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 40 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 41 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 42 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 43 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 44 H 0.09 0.65 8.09 -51.93 -0.42 0.23 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.08 0.73 7.60 -51.93 -0.39 0.34 16 47 H 0.09 0.66 6.82 -51.93 -0.35 0.30 16 48 H 0.07 0.72 7.99 -51.93 -0.41 0.30 16 49 H 0.08 2.29 7.47 -51.93 -0.39 1.90 16 50 H 0.06 1.43 8.03 -51.93 -0.42 1.01 16 LS Contribution 399.39 15.07 6.02 6.02 Total: -1.00 -30.81 399.39 -11.39 -42.21 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: -7.25 Total: 16.97 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -4.44 Total: -1.12 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: -0.33 Total: -49.34 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -0.38 Total: -30.20 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.81 -11.39 -42.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591902538.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.222 kcal (2) G-P(sol) polarization free energy of solvation -30.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds