Wall clock time and date at job start Wed Apr 1 2020 02:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99800 * 2 1 4 4 H 1.48494 * 109.47238 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47387 * 300.00262 * 3 2 1 6 6 H 1.48499 * 109.46942 * 60.00284 * 3 2 1 7 7 C 1.37869 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00267 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00130 * 359.97438 * 7 2 1 10 10 O 1.42898 * 110.88692 * 300.69880 * 9 7 2 11 11 C 1.55154 * 111.03980 * 176.79107 * 9 7 2 12 12 C 1.54325 * 102.94732 * 206.41097 * 11 9 7 13 13 N 1.47021 * 107.26943 * 22.19234 * 12 11 9 14 14 C 1.34771 * 125.64875 * 181.09450 * 13 12 11 15 15 O 1.21593 * 119.99932 * 179.97438 * 14 13 12 16 16 N 1.34779 * 120.00153 * 359.96046 * 14 13 12 17 17 C 1.46501 * 120.00160 * 179.97438 * 16 14 13 18 18 C 1.52995 * 109.47011 * 174.93500 * 17 16 14 19 19 C 1.50704 * 112.85127 * 296.29053 * 18 17 16 20 20 C 1.38233 * 119.99734 * 113.64933 * 19 18 17 21 21 C 1.38240 * 119.99642 * 179.74743 * 20 19 18 22 22 C 1.38234 * 119.99981 * 0.52949 * 21 20 19 23 23 C 1.38236 * 120.00021 * 359.74277 * 22 21 20 24 24 C 1.38233 * 119.99924 * 359.97438 * 23 22 21 25 25 C 1.53776 * 113.61540 * 165.09699 * 18 17 16 26 26 C 1.54050 * 86.98662 * 270.83712 * 25 18 17 27 27 C 1.53781 * 113.61493 * 67.48733 * 18 17 16 28 28 C 1.47426 * 108.70269 * 1.06182 * 13 12 11 29 29 H 0.97007 * 120.00188 * 359.97438 * 1 2 3 30 30 H 0.96700 * 113.99628 * 62.42672 * 10 9 7 31 31 H 1.09001 * 110.72177 * 324.78020 * 11 9 7 32 32 H 1.09007 * 110.71873 * 88.04780 * 11 9 7 33 33 H 1.09008 * 109.88119 * 262.78307 * 12 11 9 34 34 H 1.08992 * 109.88588 * 141.61309 * 12 11 9 35 35 H 0.97003 * 119.99832 * 0.02562 * 16 14 13 36 36 H 1.09001 * 109.47399 * 294.93769 * 17 16 14 37 37 H 1.09001 * 109.46772 * 54.93953 * 17 16 14 38 38 H 1.07996 * 120.00208 * 359.97438 * 20 19 18 39 39 H 1.08003 * 120.00149 * 180.29731 * 21 20 19 40 40 H 1.08003 * 120.00244 * 179.77315 * 22 21 20 41 41 H 1.08005 * 120.00100 * 179.97438 * 23 22 21 42 42 H 1.08005 * 119.99686 * 179.97438 * 24 23 22 43 43 H 1.09002 * 113.61287 * 25.43161 * 25 18 17 44 44 H 1.08999 * 113.61951 * 156.33412 * 25 18 17 45 45 H 1.08994 * 113.62337 * 220.01925 * 26 25 18 46 46 H 1.09005 * 113.68990 * 89.12059 * 26 25 18 47 47 H 1.08996 * 113.61202 * 203.66224 * 27 18 17 48 48 H 1.08990 * 113.61307 * 334.48226 * 27 18 17 49 49 H 1.09003 * 110.36600 * 217.03028 * 28 13 12 50 50 H 1.09000 * 110.45933 * 94.75318 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.4065 -2.5998 1.1478 11 6 2.2247 -3.7043 -0.0822 12 6 1.3623 -4.8015 -0.7411 13 7 0.2744 -4.1263 -1.4637 14 6 -0.7076 -4.7380 -2.1549 15 8 -1.5594 -4.0761 -2.7159 16 7 -0.7454 -6.0835 -2.2245 17 6 -1.8133 -6.7485 -2.9753 18 6 -1.5550 -8.2562 -3.0022 19 6 -0.2875 -8.6199 -3.7318 20 6 0.7742 -9.1719 -3.0397 21 6 1.9349 -9.5103 -3.7099 22 6 2.0379 -9.2867 -5.0702 23 6 0.9782 -8.7296 -5.7612 24 6 -0.1846 -8.3966 -5.0921 25 6 -2.7760 -9.0826 -3.4392 26 6 -3.1779 -9.1242 -1.9527 27 6 -1.6880 -8.9287 -1.6257 28 6 0.4353 -2.6693 -1.3064 29 1 -0.4851 0.8401 0.0004 30 1 -0.2826 -1.9227 1.1897 31 1 3.0852 -3.4634 -0.7064 32 1 2.5435 -4.0108 0.9141 33 1 0.9476 -5.4569 0.0249 34 1 1.9678 -5.3799 -1.4388 35 1 -0.0660 -6.6116 -1.7767 36 1 -2.7718 -6.5525 -2.4947 37 1 -1.8332 -6.3650 -3.9954 38 1 0.6955 -9.3420 -1.9762 39 1 2.7627 -9.9460 -3.1701 40 1 2.9461 -9.5478 -5.5932 41 1 1.0588 -8.5545 -6.8239 42 1 -1.0124 -7.9609 -5.6320 43 1 -3.4753 -8.5301 -4.0668 44 1 -2.5184 -10.0591 -3.8493 45 1 -3.5720 -10.0890 -1.6336 46 1 -3.8058 -8.2879 -1.6451 47 1 -1.1334 -9.8632 -1.5409 48 1 -1.5081 -8.2524 -0.7902 49 1 -0.5382 -2.1883 -1.2111 50 1 0.9823 -2.2529 -2.1523 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591902538.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:49 Heat of formation + Delta-G solvation = -50.727455 kcal Electronic energy + Delta-G solvation = -30952.407166 eV Core-core repulsion = 26944.098068 eV Total energy + Delta-G solvation = -4008.309098 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.75232 -40.87168 -39.14795 -38.71693 -36.03916 -35.25059 -34.19100 -32.16600 -31.79038 -31.70611 -29.66048 -28.58511 -26.89494 -26.55601 -25.00605 -23.99382 -23.11884 -22.38844 -21.47176 -20.99189 -19.77400 -19.12344 -18.72007 -18.05114 -17.33919 -16.95105 -16.89683 -16.44250 -16.22341 -16.01058 -15.70089 -15.42726 -15.15026 -14.94812 -14.75083 -14.59657 -14.27656 -14.07194 -13.88130 -13.69174 -13.48639 -13.27993 -13.23175 -13.10123 -12.86173 -12.73045 -12.52543 -12.32567 -12.29828 -12.19625 -12.09211 -11.95526 -11.49734 -11.34996 -11.23842 -11.18255 -11.08939 -10.65751 -10.32265 -10.17848 -9.76349 -9.54757 -9.32449 -8.24334 -6.41079 0.49450 0.55344 1.41116 1.44429 1.55376 1.67349 2.15354 2.38839 2.90325 3.01862 3.05333 3.48626 3.59924 3.78942 3.81172 3.83951 3.93484 4.09384 4.18155 4.19258 4.21224 4.33131 4.33278 4.50918 4.54422 4.59783 4.65275 4.72434 4.75595 4.79982 4.86830 4.88004 5.05631 5.08333 5.09485 5.10072 5.17351 5.20372 5.27659 5.29687 5.37079 5.45856 5.48808 5.51237 5.65625 5.68314 5.75418 5.76913 6.05251 6.16168 6.18703 6.66252 7.06008 7.29895 7.36930 7.56913 8.81531 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015706 B = 0.002791 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.353961 B =10029.725674 C =10699.804187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.025 3.975 3 Si 0.965 3.035 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.280 1.280 7 C -0.555 4.555 8 H 0.070 0.930 9 C 0.233 3.767 10 O -0.587 6.587 11 C -0.110 4.110 12 C 0.109 3.891 13 N -0.633 5.633 14 C 0.710 3.290 15 O -0.646 6.646 16 N -0.722 5.722 17 C 0.169 3.831 18 C -0.054 4.054 19 C -0.070 4.070 20 C -0.125 4.125 21 C -0.123 4.123 22 C -0.134 4.134 23 C -0.130 4.130 24 C -0.128 4.128 25 C -0.112 4.112 26 C -0.139 4.139 27 C -0.129 4.129 28 C 0.128 3.872 29 H 0.269 0.731 30 H 0.374 0.626 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.405 0.595 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.136 0.864 41 H 0.131 0.869 42 H 0.117 0.883 43 H 0.072 0.928 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.074 0.926 47 H 0.104 0.896 48 H 0.065 0.935 49 H 0.040 0.960 50 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.112 -23.802 -6.607 24.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.176 4.176 3 Si 0.790 3.210 4 H -0.187 1.187 5 H -0.210 1.210 6 H -0.206 1.206 7 C -0.593 4.593 8 H 0.088 0.912 9 C 0.193 3.807 10 O -0.395 6.395 11 C -0.147 4.147 12 C -0.013 4.013 13 N -0.369 5.369 14 C 0.412 3.588 15 O -0.529 6.529 16 N -0.379 5.379 17 C 0.045 3.955 18 C -0.055 4.055 19 C -0.070 4.070 20 C -0.142 4.142 21 C -0.141 4.141 22 C -0.151 4.151 23 C -0.148 4.148 24 C -0.146 4.146 25 C -0.150 4.150 26 C -0.176 4.176 27 C -0.166 4.166 28 C 0.005 3.995 29 H 0.078 0.922 30 H 0.223 0.777 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.241 0.759 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.156 0.844 39 H 0.159 0.841 40 H 0.154 0.846 41 H 0.148 0.852 42 H 0.135 0.865 43 H 0.091 0.909 44 H 0.116 0.884 45 H 0.104 0.896 46 H 0.093 0.907 47 H 0.122 0.878 48 H 0.083 0.917 49 H 0.059 0.941 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.678 -23.787 -6.933 24.786 hybrid contribution -0.042 1.831 -0.196 1.842 sum 0.636 -21.956 -7.128 23.093 Atomic orbital electron populations 1.69794 1.07239 1.28330 1.50245 1.25840 0.95738 1.02903 0.93085 0.85400 0.79205 0.78921 0.77451 1.18651 1.20951 1.20555 1.21842 0.93987 0.91232 1.52238 0.91206 1.19853 0.86745 0.93177 0.80954 1.86073 1.48899 1.57605 1.46910 1.22591 0.97255 0.93528 1.01375 1.22073 0.88065 0.95639 0.95492 1.47834 1.27597 1.08358 1.53152 1.15733 0.81019 0.82640 0.79424 1.90842 1.42484 1.65791 1.53753 1.44795 1.32473 1.03100 1.57503 1.20904 0.89255 0.89884 0.95424 1.20947 0.94149 0.92243 0.98159 1.19658 0.95035 0.98727 0.93610 1.21299 0.92887 0.99349 1.00700 1.21442 0.98198 0.99711 0.94754 1.21437 0.99156 0.99468 0.95079 1.21371 0.93600 0.99105 1.00712 1.21122 0.98508 1.00382 0.94570 1.22955 0.94818 0.99913 0.97323 1.22862 0.96129 1.02815 0.95824 1.23070 0.97603 1.01134 0.94774 1.22662 0.99787 0.77649 0.99445 0.92172 0.77700 0.89357 0.89496 0.90931 0.89798 0.75852 0.92197 0.92909 0.84431 0.84148 0.84586 0.85153 0.86472 0.90943 0.88422 0.89636 0.90720 0.87759 0.91656 0.94135 0.94371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.86 10.72 21.44 0.23 -50.63 16 2 C 0.03 1.33 5.30 84.65 0.45 1.77 16 3 Si 0.96 42.22 29.54 68.60 2.03 44.24 16 4 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.55 -29.12 8.26 25.60 0.21 -28.91 16 8 H 0.07 3.53 7.78 -2.91 -0.02 3.51 16 9 C 0.23 11.41 0.87 -10.15 -0.01 11.40 16 10 O -0.59 -30.56 13.15 -148.98 -1.96 -32.52 16 11 C -0.11 -4.16 6.13 31.78 0.19 -3.97 16 12 C 0.11 3.64 6.15 86.73 0.53 4.17 16 13 N -0.63 -26.78 3.33 -829.74 -2.76 -29.54 16 14 C 0.71 29.95 8.49 179.06 1.52 31.47 16 15 O -0.65 -33.22 16.59 -4.01 -0.07 -33.28 16 16 N -0.72 -21.98 5.18 -478.53 -2.48 -24.45 16 17 C 0.17 4.45 4.83 86.38 0.42 4.86 16 18 C -0.05 -0.99 0.62 -52.40 -0.03 -1.02 16 19 C -0.07 -1.32 4.57 -19.87 -0.09 -1.41 16 20 C -0.12 -2.06 9.05 22.27 0.20 -1.85 16 21 C -0.12 -1.93 10.05 22.27 0.22 -1.70 16 22 C -0.13 -2.19 10.05 22.27 0.22 -1.97 16 23 C -0.13 -2.37 10.05 22.27 0.22 -2.15 16 24 C -0.13 -2.55 9.36 22.27 0.21 -2.34 16 25 C -0.11 -1.65 7.12 31.21 0.22 -1.43 16 26 C -0.14 -1.97 7.74 31.21 0.24 -1.73 16 27 C -0.13 -1.93 6.13 31.12 0.19 -1.74 16 28 C 0.13 6.49 5.50 86.86 0.48 6.97 16 29 H 0.27 14.29 8.31 -92.70 -0.77 13.52 16 30 H 0.37 20.60 7.32 -74.06 -0.54 20.06 16 31 H 0.09 3.13 8.03 -2.39 -0.02 3.11 16 32 H 0.09 3.07 8.14 -2.38 -0.02 3.05 16 33 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 34 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.41 10.29 7.22 -92.71 -0.67 9.62 16 36 H 0.06 1.67 7.31 -2.39 -0.02 1.65 16 37 H 0.05 1.56 8.00 -2.39 -0.02 1.54 16 38 H 0.14 1.78 6.44 -2.91 -0.02 1.77 16 39 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 40 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 41 H 0.13 1.95 8.06 -2.91 -0.02 1.93 16 42 H 0.12 2.28 8.06 -2.91 -0.02 2.26 16 43 H 0.07 1.08 8.10 -2.39 -0.02 1.06 16 44 H 0.10 1.25 8.09 -2.39 -0.02 1.23 16 45 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.07 1.22 7.60 -2.38 -0.02 1.20 16 47 H 0.10 1.23 6.82 -2.39 -0.02 1.21 16 48 H 0.06 1.12 7.99 -2.39 -0.02 1.10 16 49 H 0.04 2.36 7.47 -2.39 -0.02 2.35 16 50 H 0.04 2.02 8.03 -2.39 -0.02 2.00 16 Total: -1.00 -68.57 399.39 0.14 -68.43 By element: Atomic # 1 Polarization: 47.57 SS G_CDS: -0.26 Total: 47.31 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: 5.41 Total: 10.44 kcal Atomic # 7 Polarization: -99.61 SS G_CDS: -5.01 Total: -104.62 kcal Atomic # 8 Polarization: -63.78 SS G_CDS: -2.03 Total: -65.80 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.24 kcal Total: -68.57 0.14 -68.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591902538.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.699 kcal (2) G-P(sol) polarization free energy of solvation -68.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds