Wall clock time and date at job start Wed Apr 1 2020 03:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99555 * 2 1 4 4 H 1.48506 * 109.46984 * 269.99683 * 3 2 1 5 5 H 1.48498 * 109.47679 * 29.99887 * 3 2 1 6 6 H 1.48507 * 109.47218 * 149.99957 * 3 2 1 7 7 C 1.37877 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99259 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00026 * 0.27937 * 7 2 1 10 10 O 1.42905 * 110.64123 * 59.02004 * 9 7 2 11 11 C 1.55151 * 110.71917 * 182.16560 * 9 7 2 12 12 C 1.55123 * 101.48813 * 153.73428 * 11 9 7 13 13 N 1.47425 * 104.94108 * 323.22017 * 12 11 9 14 14 C 1.34776 * 125.65245 * 204.03917 * 13 12 11 15 15 O 1.21585 * 120.00219 * 174.98456 * 14 13 12 16 16 N 1.34777 * 119.99451 * 354.98163 * 14 13 12 17 17 C 1.46502 * 119.99917 * 184.99534 * 16 14 13 18 18 C 1.52995 * 109.47282 * 185.01537 * 17 16 14 19 19 C 1.53003 * 115.54900 * 270.78371 * 18 17 16 20 20 C 1.50707 * 109.47072 * 294.66720 * 19 18 17 21 21 C 1.38238 * 119.99895 * 275.63714 * 20 19 18 22 22 C 1.38236 * 119.99692 * 179.81110 * 21 20 19 23 23 C 1.38233 * 119.99913 * 0.39060 * 22 21 20 24 24 C 1.38238 * 120.00333 * 359.86055 * 23 22 21 25 25 C 1.38232 * 119.99552 * 359.95679 * 24 23 22 26 26 C 1.52996 * 117.50044 * 125.07618 * 18 17 16 27 27 C 1.52995 * 117.50005 * 56.45181 * 18 17 16 28 28 C 1.47028 * 108.70313 * 24.00101 * 13 12 11 29 29 H 0.96994 * 120.00125 * 0.02562 * 1 2 3 30 30 H 0.96697 * 113.99966 * 300.70234 * 10 9 7 31 31 H 1.09003 * 111.00297 * 271.94198 * 11 9 7 32 32 H 1.08995 * 111.00773 * 35.78639 * 11 9 7 33 33 H 1.09000 * 110.42057 * 204.29272 * 12 11 9 34 34 H 1.09002 * 110.20776 * 82.03976 * 12 11 9 35 35 H 0.97004 * 119.99971 * 5.00623 * 16 14 13 36 36 H 1.08995 * 109.47508 * 305.01876 * 17 16 14 37 37 H 1.09000 * 109.46301 * 65.01429 * 17 16 14 38 38 H 1.08995 * 109.47294 * 54.66804 * 19 18 17 39 39 H 1.09000 * 109.46940 * 174.67142 * 19 18 17 40 40 H 1.07998 * 120.00041 * 359.97438 * 21 20 19 41 41 H 1.07997 * 119.99717 * 180.22389 * 22 21 20 42 42 H 1.08003 * 119.99615 * 179.83332 * 23 22 21 43 43 H 1.07994 * 120.00387 * 179.97438 * 24 23 22 44 44 H 1.08006 * 120.00129 * 180.02562 * 25 24 23 45 45 H 1.08998 * 117.50099 * 359.97438 * 26 18 17 46 46 H 1.08999 * 117.50042 * 145.02437 * 26 18 17 47 47 H 1.09008 * 117.49813 * 214.98185 * 27 18 17 48 48 H 1.08998 * 117.50227 * 359.97438 * 27 18 17 49 49 H 1.08994 * 109.88471 * 239.52267 * 28 13 12 50 50 H 1.09000 * 109.87827 * 118.35516 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4992 -0.0052 10 8 0.4080 -2.5890 -1.1555 11 6 2.2323 -3.6997 0.0513 12 6 1.3481 -4.7906 0.7104 13 7 0.5268 -4.0682 1.6988 14 6 -0.0384 -4.6092 2.7962 15 8 -0.6213 -3.8992 3.5927 16 7 0.0425 -5.9374 3.0106 17 6 -0.6635 -6.5408 4.1436 18 6 -0.3085 -8.0263 4.2332 19 6 -1.2081 -8.9693 3.4317 20 6 -2.6023 -8.9402 4.0034 21 6 -2.9241 -9.7433 5.0815 22 6 -4.2018 -9.7137 5.6083 23 6 -5.1598 -8.8869 5.0519 24 6 -4.8394 -8.0876 3.9705 25 6 -3.5607 -8.1145 3.4461 26 6 0.2490 -8.5406 5.5619 27 6 1.1722 -8.3929 4.3509 28 6 0.4271 -2.6595 1.2897 29 1 -0.4850 0.8400 -0.0004 30 1 -0.2490 -1.8822 -1.2178 31 1 2.5437 -3.9973 -0.9500 32 1 3.0961 -3.4693 0.6749 33 1 1.9700 -5.5360 1.2061 34 1 0.7123 -5.2630 -0.0384 35 1 0.5684 -6.4937 2.4149 36 1 -0.3667 -6.0401 5.0651 37 1 -1.7387 -6.4321 4.0011 38 1 -1.2356 -8.6478 2.3906 39 1 -0.8133 -9.9837 3.4885 40 1 -2.1767 -10.3920 5.5138 41 1 -4.4523 -10.3385 6.4528 42 1 -6.1588 -8.8658 5.4618 43 1 -5.5879 -7.4420 3.5356 44 1 -3.3101 -7.4897 2.6015 45 1 0.3632 -7.8205 6.3722 46 1 -0.0252 -9.5509 5.8654 47 1 1.5054 -9.3061 3.8576 48 1 1.8935 -7.5758 4.3641 49 1 0.8344 -2.0171 2.0703 50 1 -0.6149 -2.4014 1.1003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591991137.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:02 Heat of formation + Delta-G solvation = -31.911843 kcal Electronic energy + Delta-G solvation = -30253.669655 eV Core-core repulsion = 26246.176464 eV Total energy + Delta-G solvation = -4007.493192 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.12110 -39.40759 -38.15698 -37.15906 -34.23729 -33.62563 -32.50557 -32.17308 -31.04266 -30.03257 -27.99118 -27.50827 -26.48586 -24.62504 -22.93435 -22.66410 -22.36295 -21.68714 -19.66000 -19.60533 -19.15297 -17.53822 -17.05497 -16.81896 -16.05874 -15.64324 -15.43210 -15.33540 -15.03501 -14.85946 -14.64934 -14.25879 -13.72692 -13.60101 -13.44917 -13.35310 -12.92464 -12.88693 -12.80005 -12.55540 -12.40471 -12.08750 -11.72410 -11.68131 -11.56030 -11.40932 -11.27477 -11.13785 -11.03422 -10.80358 -10.64457 -10.47052 -10.43132 -10.16115 -10.13575 -9.54642 -9.31247 -9.07098 -8.84886 -8.74886 -8.65511 -8.29737 -7.72106 -6.26875 -4.35195 1.19513 1.25663 3.03664 3.22757 3.30132 3.32747 3.55743 3.69022 3.77695 4.28104 4.41476 4.45494 4.50413 4.62403 4.70176 4.80647 4.86788 4.91437 5.00851 5.01875 5.25948 5.35790 5.39429 5.43306 5.48252 5.59639 5.62045 5.68432 5.71973 5.80709 5.83443 5.89702 5.91870 5.94765 6.00832 6.03977 6.13380 6.31110 6.37798 6.48096 6.52249 6.73982 6.81520 6.85830 6.91260 7.02606 7.28876 7.34668 7.68251 7.75413 8.04857 8.56908 8.68669 9.16961 9.32557 9.42044 10.81023 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017697 B = 0.002386 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.822601 B =11730.294090 C =12361.466551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.070 3.930 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.537 4.537 8 H 0.066 0.934 9 C 0.248 3.752 10 O -0.586 6.586 11 C -0.116 4.116 12 C 0.104 3.896 13 N -0.630 5.630 14 C 0.715 3.285 15 O -0.598 6.598 16 N -0.749 5.749 17 C 0.177 3.823 18 C -0.135 4.135 19 C -0.043 4.043 20 C -0.075 4.075 21 C -0.114 4.114 22 C -0.122 4.122 23 C -0.126 4.126 24 C -0.117 4.117 25 C -0.112 4.112 26 C -0.160 4.160 27 C -0.168 4.168 28 C 0.122 3.878 29 H 0.270 0.730 30 H 0.384 0.616 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.393 0.607 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.097 0.903 46 H 0.096 0.904 47 H 0.097 0.903 48 H 0.099 0.901 49 H 0.063 0.937 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.546 -21.360 8.171 23.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.575 4.575 8 H 0.084 0.916 9 C 0.207 3.793 10 O -0.395 6.395 11 C -0.154 4.154 12 C -0.019 4.019 13 N -0.368 5.368 14 C 0.417 3.583 15 O -0.477 6.477 16 N -0.406 5.406 17 C 0.052 3.948 18 C -0.135 4.135 19 C -0.080 4.080 20 C -0.075 4.075 21 C -0.132 4.132 22 C -0.140 4.140 23 C -0.144 4.144 24 C -0.135 4.135 25 C -0.130 4.130 26 C -0.198 4.198 27 C -0.205 4.205 28 C 0.000 4.000 29 H 0.080 0.920 30 H 0.235 0.765 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.227 0.773 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.115 0.885 46 H 0.114 0.886 47 H 0.115 0.885 48 H 0.117 0.883 49 H 0.082 0.918 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.842 -21.241 8.710 23.277 hybrid contribution 0.223 1.193 -0.060 1.216 sum -3.618 -20.048 8.650 22.132 Atomic orbital electron populations 1.69642 1.05989 1.27922 1.49794 1.25076 0.95056 0.99769 0.93403 0.86401 0.79800 0.82461 0.78230 1.20405 1.21003 1.19729 1.21510 0.93657 0.90129 1.52223 0.91562 1.19495 0.86221 0.92033 0.81505 1.86083 1.51726 1.55107 1.46611 1.22758 0.97515 0.95021 1.00092 1.22244 0.93205 0.95345 0.91126 1.47940 1.53188 1.12577 1.23062 1.15525 0.79899 0.81574 0.81346 1.90886 1.49739 1.60502 1.46524 1.45124 1.56154 1.06672 1.32648 1.20566 0.96732 0.88182 0.89279 1.21622 0.95590 0.95092 1.01222 1.20135 0.90543 0.98516 0.98813 1.19777 0.95142 0.96480 0.96116 1.20976 0.96436 0.99492 0.96308 1.21107 0.93590 0.99330 0.99939 1.21136 0.99408 0.97044 0.96800 1.21183 0.96710 0.98967 0.96624 1.21151 0.93130 0.98452 1.00284 1.23033 1.03085 1.02356 0.91277 1.23056 0.92086 1.03338 1.02051 1.22865 1.01343 0.77079 0.98706 0.91973 0.76492 0.90591 0.90598 0.92696 0.92124 0.77314 0.91635 0.91380 0.90281 0.90637 0.86398 0.86341 0.86344 0.86085 0.85980 0.88500 0.88588 0.88492 0.88303 0.91826 0.92063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.97 10.97 55.43 0.61 -23.36 16 2 C 0.07 1.84 5.28 -17.82 -0.09 1.74 16 3 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 7 C -0.54 -14.05 8.11 -34.44 -0.28 -14.33 16 8 H 0.07 1.70 7.77 -52.49 -0.41 1.30 16 9 C 0.25 5.99 0.85 -89.94 -0.08 5.92 16 10 O -0.59 -14.72 13.08 -35.23 -0.46 -15.18 16 11 C -0.12 -2.28 6.24 -24.47 -0.15 -2.44 16 12 C 0.10 1.80 6.52 -2.41 -0.02 1.79 16 13 N -0.63 -13.10 3.33 -176.10 -0.59 -13.69 16 14 C 0.71 14.57 8.48 -86.92 -0.74 13.84 16 15 O -0.60 -14.69 16.66 5.29 0.09 -14.60 16 16 N -0.75 -11.16 5.37 -65.23 -0.35 -11.51 16 17 C 0.18 2.34 5.64 -4.04 -0.02 2.32 16 18 C -0.13 -1.26 1.61 -154.51 -0.25 -1.51 16 19 C -0.04 -0.37 5.23 -27.88 -0.15 -0.51 16 20 C -0.08 -0.73 4.75 -104.62 -0.50 -1.23 16 21 C -0.11 -1.01 9.72 -39.58 -0.38 -1.39 16 22 C -0.12 -1.06 10.05 -39.58 -0.40 -1.45 16 23 C -0.13 -1.15 10.05 -39.58 -0.40 -1.55 16 24 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 25 C -0.11 -1.21 8.39 -39.59 -0.33 -1.54 16 26 C -0.16 -1.31 9.90 -26.73 -0.26 -1.57 16 27 C -0.17 -1.38 9.54 -26.73 -0.26 -1.63 16 28 C 0.12 3.00 5.39 -3.06 -0.02 2.99 16 29 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.38 9.96 7.21 45.56 0.33 10.28 16 31 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.08 1.45 8.03 -51.93 -0.42 1.03 16 33 H 0.05 0.76 7.42 -51.93 -0.39 0.38 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.39 4.93 6.81 -40.82 -0.28 4.65 16 36 H 0.07 0.97 7.84 -51.93 -0.41 0.56 16 37 H 0.07 0.99 6.34 -51.93 -0.33 0.66 16 38 H 0.08 0.70 8.05 -51.93 -0.42 0.28 16 39 H 0.08 0.53 8.07 -51.93 -0.42 0.11 16 40 H 0.12 0.83 7.82 -52.49 -0.41 0.42 16 41 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.12 0.86 8.06 -52.48 -0.42 0.43 16 43 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 44 H 0.12 1.34 8.05 -52.48 -0.42 0.92 16 45 H 0.10 0.84 8.04 -51.93 -0.42 0.42 16 46 H 0.10 0.65 7.90 -51.93 -0.41 0.24 16 47 H 0.10 0.65 8.14 -51.92 -0.42 0.23 16 48 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 49 H 0.06 1.72 7.81 -51.93 -0.41 1.31 16 50 H 0.06 1.65 8.01 -51.93 -0.42 1.23 16 LS Contribution 406.27 15.07 6.12 6.12 Total: -1.00 -30.77 406.27 -11.62 -42.40 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: -7.31 Total: 16.43 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -4.72 Total: -2.16 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: -0.33 Total: -48.56 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -0.37 Total: -29.78 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -30.77 -11.62 -42.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591991137.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.484 kcal (2) G-P(sol) polarization free energy of solvation -30.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds