Wall clock time and date at job start Wed Apr 1 2020 03:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99555 * 2 1 4 4 H 1.48506 * 109.46984 * 269.99683 * 3 2 1 5 5 H 1.48498 * 109.47679 * 29.99887 * 3 2 1 6 6 H 1.48507 * 109.47218 * 149.99957 * 3 2 1 7 7 C 1.37877 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99259 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00026 * 0.27937 * 7 2 1 10 10 O 1.42905 * 110.64123 * 59.02004 * 9 7 2 11 11 C 1.55151 * 110.71917 * 182.16560 * 9 7 2 12 12 C 1.55123 * 101.48813 * 153.73428 * 11 9 7 13 13 N 1.47425 * 104.94108 * 323.22017 * 12 11 9 14 14 C 1.34776 * 125.65245 * 204.03917 * 13 12 11 15 15 O 1.21585 * 120.00219 * 174.98456 * 14 13 12 16 16 N 1.34777 * 119.99451 * 354.98163 * 14 13 12 17 17 C 1.46502 * 119.99917 * 184.99534 * 16 14 13 18 18 C 1.52995 * 109.47282 * 185.01537 * 17 16 14 19 19 C 1.53003 * 115.54900 * 270.78371 * 18 17 16 20 20 C 1.50707 * 109.47072 * 294.66720 * 19 18 17 21 21 C 1.38238 * 119.99895 * 275.63714 * 20 19 18 22 22 C 1.38236 * 119.99692 * 179.81110 * 21 20 19 23 23 C 1.38233 * 119.99913 * 0.39060 * 22 21 20 24 24 C 1.38238 * 120.00333 * 359.86055 * 23 22 21 25 25 C 1.38232 * 119.99552 * 359.95679 * 24 23 22 26 26 C 1.52996 * 117.50044 * 125.07618 * 18 17 16 27 27 C 1.52995 * 117.50005 * 56.45181 * 18 17 16 28 28 C 1.47028 * 108.70313 * 24.00101 * 13 12 11 29 29 H 0.96994 * 120.00125 * 0.02562 * 1 2 3 30 30 H 0.96697 * 113.99966 * 300.70234 * 10 9 7 31 31 H 1.09003 * 111.00297 * 271.94198 * 11 9 7 32 32 H 1.08995 * 111.00773 * 35.78639 * 11 9 7 33 33 H 1.09000 * 110.42057 * 204.29272 * 12 11 9 34 34 H 1.09002 * 110.20776 * 82.03976 * 12 11 9 35 35 H 0.97004 * 119.99971 * 5.00623 * 16 14 13 36 36 H 1.08995 * 109.47508 * 305.01876 * 17 16 14 37 37 H 1.09000 * 109.46301 * 65.01429 * 17 16 14 38 38 H 1.08995 * 109.47294 * 54.66804 * 19 18 17 39 39 H 1.09000 * 109.46940 * 174.67142 * 19 18 17 40 40 H 1.07998 * 120.00041 * 359.97438 * 21 20 19 41 41 H 1.07997 * 119.99717 * 180.22389 * 22 21 20 42 42 H 1.08003 * 119.99615 * 179.83332 * 23 22 21 43 43 H 1.07994 * 120.00387 * 179.97438 * 24 23 22 44 44 H 1.08006 * 120.00129 * 180.02562 * 25 24 23 45 45 H 1.08998 * 117.50099 * 359.97438 * 26 18 17 46 46 H 1.08999 * 117.50042 * 145.02437 * 26 18 17 47 47 H 1.09008 * 117.49813 * 214.98185 * 27 18 17 48 48 H 1.08998 * 117.50227 * 359.97438 * 27 18 17 49 49 H 1.08994 * 109.88471 * 239.52267 * 28 13 12 50 50 H 1.09000 * 109.87827 * 118.35516 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4992 -0.0052 10 8 0.4080 -2.5890 -1.1555 11 6 2.2323 -3.6997 0.0513 12 6 1.3481 -4.7906 0.7104 13 7 0.5268 -4.0682 1.6988 14 6 -0.0384 -4.6092 2.7962 15 8 -0.6213 -3.8992 3.5927 16 7 0.0425 -5.9374 3.0106 17 6 -0.6635 -6.5408 4.1436 18 6 -0.3085 -8.0263 4.2332 19 6 -1.2081 -8.9693 3.4317 20 6 -2.6023 -8.9402 4.0034 21 6 -2.9241 -9.7433 5.0815 22 6 -4.2018 -9.7137 5.6083 23 6 -5.1598 -8.8869 5.0519 24 6 -4.8394 -8.0876 3.9705 25 6 -3.5607 -8.1145 3.4461 26 6 0.2490 -8.5406 5.5619 27 6 1.1722 -8.3929 4.3509 28 6 0.4271 -2.6595 1.2897 29 1 -0.4850 0.8400 -0.0004 30 1 -0.2490 -1.8822 -1.2178 31 1 2.5437 -3.9973 -0.9500 32 1 3.0961 -3.4693 0.6749 33 1 1.9700 -5.5360 1.2061 34 1 0.7123 -5.2630 -0.0384 35 1 0.5684 -6.4937 2.4149 36 1 -0.3667 -6.0401 5.0651 37 1 -1.7387 -6.4321 4.0011 38 1 -1.2356 -8.6478 2.3906 39 1 -0.8133 -9.9837 3.4885 40 1 -2.1767 -10.3920 5.5138 41 1 -4.4523 -10.3385 6.4528 42 1 -6.1588 -8.8658 5.4618 43 1 -5.5879 -7.4420 3.5356 44 1 -3.3101 -7.4897 2.6015 45 1 0.3632 -7.8205 6.3722 46 1 -0.0252 -9.5509 5.8654 47 1 1.5054 -9.3061 3.8576 48 1 1.8935 -7.5758 4.3641 49 1 0.8344 -2.0171 2.0703 50 1 -0.6149 -2.4014 1.1003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591991137.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:01 Heat of formation + Delta-G solvation = -50.708246 kcal Electronic energy + Delta-G solvation = -30254.484729 eV Core-core repulsion = 26246.176464 eV Total energy + Delta-G solvation = -4008.308265 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.38795 -40.48977 -39.29552 -38.58673 -36.07948 -35.01628 -34.19892 -33.17903 -31.79780 -31.66577 -29.66992 -28.52725 -27.67371 -26.36639 -24.19652 -23.56517 -23.16762 -22.40757 -21.45665 -20.99955 -20.24637 -19.19074 -18.77019 -17.64051 -17.37340 -16.99025 -16.85144 -16.41393 -16.29965 -16.01938 -15.87462 -15.59205 -15.03379 -14.86994 -14.74353 -14.60519 -14.29233 -14.10651 -13.95814 -13.63994 -13.53863 -13.49293 -13.27051 -13.06550 -12.85486 -12.54109 -12.34111 -12.32003 -12.30303 -12.27347 -12.10614 -12.05445 -11.82983 -11.41274 -11.19000 -11.12848 -10.74892 -10.64523 -10.30421 -10.22244 -9.77158 -9.54688 -9.39015 -8.26950 -6.42620 0.49087 0.53825 1.40449 1.42657 1.52230 1.63246 2.13119 2.37274 2.75009 2.93512 2.99787 3.19081 3.66436 3.72059 3.80454 3.93233 3.97540 4.06817 4.09872 4.17177 4.18639 4.23694 4.33816 4.38315 4.53358 4.59261 4.67322 4.68427 4.71740 4.79855 4.84654 4.92414 4.96352 5.04504 5.08352 5.08863 5.12990 5.21683 5.25081 5.27770 5.31754 5.36232 5.49496 5.49714 5.62135 5.66886 5.74961 5.77069 6.02557 6.17545 6.18604 6.64189 7.06614 7.28314 7.35822 7.56230 8.79274 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017697 B = 0.002386 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.822601 B =11730.294090 C =12361.466551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.024 3.976 3 Si 0.964 3.036 4 H -0.271 1.271 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.556 4.556 8 H 0.068 0.932 9 C 0.233 3.767 10 O -0.587 6.587 11 C -0.110 4.110 12 C 0.108 3.892 13 N -0.635 5.635 14 C 0.709 3.291 15 O -0.647 6.647 16 N -0.722 5.722 17 C 0.177 3.823 18 C -0.140 4.140 19 C -0.036 4.036 20 C -0.083 4.083 21 C -0.116 4.116 22 C -0.126 4.126 23 C -0.135 4.135 24 C -0.137 4.137 25 C -0.136 4.136 26 C -0.153 4.153 27 C -0.156 4.156 28 C 0.140 3.860 29 H 0.270 0.730 30 H 0.376 0.624 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.409 0.591 36 H 0.047 0.953 37 H 0.051 0.949 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.135 0.865 43 H 0.122 0.878 44 H 0.108 0.892 45 H 0.087 0.913 46 H 0.120 0.880 47 H 0.122 0.878 48 H 0.088 0.912 49 H 0.028 0.972 50 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.741 -24.467 8.650 26.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.177 4.177 3 Si 0.789 3.211 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.594 4.594 8 H 0.086 0.914 9 C 0.193 3.807 10 O -0.396 6.396 11 C -0.148 4.148 12 C -0.013 4.013 13 N -0.372 5.372 14 C 0.411 3.589 15 O -0.530 6.530 16 N -0.379 5.379 17 C 0.054 3.946 18 C -0.141 4.141 19 C -0.073 4.073 20 C -0.083 4.083 21 C -0.134 4.134 22 C -0.143 4.143 23 C -0.153 4.153 24 C -0.155 4.155 25 C -0.154 4.154 26 C -0.190 4.190 27 C -0.193 4.193 28 C 0.016 3.984 29 H 0.079 0.921 30 H 0.226 0.774 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.120 0.880 34 H 0.089 0.911 35 H 0.246 0.754 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.091 0.909 39 H 0.120 0.880 40 H 0.161 0.839 41 H 0.161 0.839 42 H 0.153 0.847 43 H 0.140 0.860 44 H 0.126 0.874 45 H 0.106 0.894 46 H 0.138 0.862 47 H 0.140 0.860 48 H 0.107 0.893 49 H 0.046 0.954 50 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -2.004 -24.423 9.168 26.164 hybrid contribution -0.390 2.149 -0.158 2.190 sum -2.394 -22.274 9.010 24.147 Atomic orbital electron populations 1.69754 1.07147 1.28462 1.50306 1.25842 0.95814 1.02907 0.93146 0.85463 0.78624 0.78622 0.78391 1.19636 1.21240 1.19168 1.21857 0.93978 0.91365 1.52238 0.91357 1.19709 0.86718 0.93636 0.80642 1.86073 1.51675 1.54707 1.47118 1.22756 0.96933 0.93550 1.01534 1.22427 0.93004 0.95100 0.90800 1.47870 1.53953 1.11465 1.23890 1.15778 0.79436 0.82982 0.80723 1.90846 1.51778 1.62178 1.48224 1.44925 1.55386 1.04569 1.33013 1.20614 0.95595 0.90875 0.87559 1.21419 0.97154 0.92279 1.03225 1.20127 0.89623 0.99493 0.98103 1.19969 0.95503 0.96298 0.96485 1.21288 0.97098 0.99286 0.95738 1.21472 0.93450 0.99068 1.00340 1.21405 1.00591 0.96872 0.96447 1.21359 0.96809 0.99773 0.97524 1.21212 0.94075 0.99394 1.00693 1.23133 1.02187 1.03176 0.90503 1.23136 0.90553 1.03893 1.01752 1.22363 0.98864 0.79010 0.98133 0.92084 0.77399 0.88961 0.89898 0.88041 0.91083 0.75399 0.93502 0.93036 0.90879 0.88025 0.83915 0.83938 0.84718 0.86012 0.87424 0.89432 0.86231 0.85976 0.89336 0.95386 0.95691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.86 10.97 21.45 0.24 -50.63 16 2 C 0.02 1.25 5.28 84.65 0.45 1.70 16 3 Si 0.96 42.63 29.54 68.60 2.03 44.66 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 7 C -0.56 -29.45 8.11 25.60 0.21 -29.24 16 8 H 0.07 3.50 7.77 -2.91 -0.02 3.48 16 9 C 0.23 11.41 0.85 -10.35 -0.01 11.40 16 10 O -0.59 -29.99 13.08 -148.98 -1.95 -31.94 16 11 C -0.11 -4.14 6.24 32.06 0.20 -3.94 16 12 C 0.11 3.50 6.52 86.93 0.57 4.07 16 13 N -0.63 -26.55 3.33 -829.31 -2.76 -29.31 16 14 C 0.71 29.42 8.48 179.05 1.52 30.94 16 15 O -0.65 -33.36 16.66 -3.98 -0.07 -33.43 16 16 N -0.72 -21.00 5.37 -478.55 -2.57 -23.57 16 17 C 0.18 4.67 5.64 86.38 0.49 5.16 16 18 C -0.14 -2.31 1.61 -52.19 -0.08 -2.40 16 19 C -0.04 -0.53 5.23 29.85 0.16 -0.37 16 20 C -0.08 -1.49 4.75 -19.86 -0.09 -1.59 16 21 C -0.12 -1.76 9.72 22.27 0.22 -1.54 16 22 C -0.13 -1.91 10.05 22.27 0.22 -1.69 16 23 C -0.14 -2.38 10.05 22.27 0.22 -2.15 16 24 C -0.14 -2.87 10.05 22.27 0.22 -2.65 16 25 C -0.14 -3.01 8.39 22.27 0.19 -2.82 16 26 C -0.15 -2.01 9.90 30.59 0.30 -1.71 16 27 C -0.16 -2.00 9.54 30.59 0.29 -1.70 16 28 C 0.14 7.20 5.39 86.73 0.47 7.66 16 29 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 30 H 0.38 20.25 7.21 -74.06 -0.53 19.72 16 31 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 32 H 0.08 3.00 8.03 -2.39 -0.02 2.98 16 33 H 0.10 2.37 7.42 -2.39 -0.02 2.36 16 34 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.41 9.25 6.81 -92.71 -0.63 8.62 16 36 H 0.05 1.41 7.84 -2.39 -0.02 1.40 16 37 H 0.05 1.55 6.34 -2.39 -0.02 1.54 16 38 H 0.07 1.15 8.05 -2.39 -0.02 1.13 16 39 H 0.10 0.98 8.07 -2.39 -0.02 0.97 16 40 H 0.14 1.40 7.82 -2.91 -0.02 1.37 16 41 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 42 H 0.13 1.81 8.06 -2.91 -0.02 1.78 16 43 H 0.12 2.36 8.06 -2.91 -0.02 2.33 16 44 H 0.11 2.57 8.05 -2.91 -0.02 2.54 16 45 H 0.09 1.35 8.04 -2.39 -0.02 1.33 16 46 H 0.12 1.05 7.90 -2.39 -0.02 1.03 16 47 H 0.12 1.01 8.14 -2.38 -0.02 0.99 16 48 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 49 H 0.03 1.59 7.81 -2.39 -0.02 1.57 16 50 H 0.02 1.42 8.01 -2.39 -0.02 1.40 16 Total: -1.00 -70.79 406.27 0.23 -70.56 By element: Atomic # 1 Polarization: 44.76 SS G_CDS: -0.22 Total: 44.54 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: 5.53 Total: 9.13 kcal Atomic # 7 Polarization: -98.42 SS G_CDS: -5.10 Total: -103.51 kcal Atomic # 8 Polarization: -63.35 SS G_CDS: -2.01 Total: -65.37 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -70.79 0.23 -70.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591991137.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.852 kcal (2) G-P(sol) polarization free energy of solvation -70.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds