Wall clock time and date at job start Wed Apr 1 2020 02:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99909 * 2 1 4 4 H 1.48498 * 109.47329 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.47105 * 240.00206 * 3 2 1 6 6 H 1.48503 * 109.46825 * 119.99957 * 3 2 1 7 7 C 1.38803 * 119.99736 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99888 * 155.49686 * 7 2 1 9 9 N 1.36936 * 120.00756 * 335.49342 * 7 2 1 10 10 C 1.46932 * 120.62484 * 331.82023 * 9 7 2 11 11 C 1.52761 * 109.00441 * 233.58057 * 10 9 7 12 12 C 1.53044 * 109.38356 * 305.58599 * 11 10 9 13 13 C 1.53001 * 109.44757 * 181.25391 * 12 11 10 14 14 N 1.46504 * 109.46875 * 64.93943 * 13 12 11 15 15 C 1.34779 * 119.99679 * 179.97438 * 14 13 12 16 16 O 1.21278 * 120.00092 * 0.02562 * 15 14 13 17 17 C 1.50707 * 119.99959 * 180.02562 * 15 14 13 18 18 C 1.52992 * 109.47215 * 180.02562 * 17 15 14 19 19 H 1.09004 * 110.13520 * 54.29889 * 18 17 15 20 20 O 1.43950 * 110.15475 * 292.60267 * 18 17 15 21 21 C 1.44111 * 104.85612 * 269.29910 * 20 18 17 22 22 C 1.51078 * 105.97571 * 331.54802 * 21 20 18 23 23 C 1.37968 * 132.69062 * 197.69922 * 22 21 20 24 24 C 1.38293 * 119.92335 * 180.02562 * 23 22 21 25 25 C 1.38265 * 120.04015 * 0.02562 * 24 23 22 26 26 C 1.38298 * 120.04058 * 0.02562 * 25 24 23 27 27 C 1.37977 * 119.91863 * 359.96975 * 26 25 24 28 28 C 1.53033 * 109.53734 * 61.24440 * 12 11 10 29 29 C 1.46922 * 120.63625 * 152.09452 * 9 7 2 30 30 H 0.97002 * 120.00481 * 174.24549 * 1 2 3 31 31 H 1.09003 * 109.58609 * 353.41270 * 10 9 7 32 32 H 1.08993 * 109.58780 * 113.84153 * 10 9 7 33 33 H 1.09006 * 109.56299 * 185.55064 * 11 10 9 34 34 H 1.09002 * 109.38821 * 65.51517 * 11 10 9 35 35 H 1.09003 * 109.46011 * 301.22012 * 12 11 10 36 36 H 1.08997 * 109.47330 * 184.93558 * 13 12 11 37 37 H 1.08999 * 109.47179 * 304.94318 * 13 12 11 38 38 H 0.96998 * 120.00207 * 0.02562 * 14 13 12 39 39 H 1.08997 * 109.46602 * 300.00439 * 17 15 14 40 40 H 1.09005 * 109.46649 * 60.00173 * 17 15 14 41 41 H 1.09007 * 110.13888 * 212.42743 * 21 20 18 42 42 H 1.09006 * 110.21908 * 90.71290 * 21 20 18 43 43 H 1.08000 * 120.03892 * 0.02777 * 23 22 21 44 44 H 1.08001 * 119.98222 * 179.97438 * 24 23 22 45 45 H 1.07992 * 119.98378 * 179.97438 * 25 24 23 46 46 H 1.07995 * 120.04148 * 180.02562 * 26 25 24 47 47 H 1.09000 * 109.50059 * 178.68310 * 28 12 11 48 48 H 1.09002 * 109.50022 * 58.58128 * 28 12 11 49 49 H 1.08999 * 109.58741 * 246.15851 * 29 9 7 50 50 H 1.09001 * 109.58687 * 6.44113 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1038 1.6964 -1.2125 6 1 3.1039 1.6964 1.2126 7 6 2.0101 -1.2021 -0.0005 8 1 3.0172 -1.2441 -0.3885 9 7 1.4181 -2.3349 0.4908 10 6 0.3872 -2.2483 1.5342 11 6 0.7855 -3.1479 2.7029 12 6 1.0415 -4.5661 2.1879 13 6 1.4101 -5.4756 3.3618 14 7 0.2648 -5.5915 4.2680 15 6 0.3587 -6.3484 5.3792 16 8 1.3914 -6.9332 5.6291 17 6 -0.8196 -6.4682 6.3111 18 6 -0.4510 -7.3775 7.4850 19 1 0.4558 -7.0155 7.9697 20 8 -0.2622 -8.7286 7.0256 21 6 -1.5601 -9.3437 7.1435 22 6 -2.2604 -8.6238 8.2721 23 6 -3.3562 -8.9423 9.0476 24 6 -3.7822 -8.0691 10.0317 25 6 -3.1112 -6.8779 10.2378 26 6 -2.0135 -6.5580 9.4598 27 6 -1.5884 -7.4293 8.4781 28 6 2.1920 -4.5444 1.1790 29 6 1.8058 -3.6602 -0.0109 30 1 -0.4851 -0.8358 -0.0842 31 1 0.3030 -1.2180 1.8801 32 1 -0.5696 -2.5799 1.1310 33 1 -0.0185 -3.1676 3.4388 34 1 1.6928 -2.7595 3.1656 35 1 0.1412 -4.9448 1.7039 36 1 1.6776 -6.4632 2.9862 37 1 2.2571 -5.0495 3.8994 38 1 -0.5613 -5.1241 4.0679 39 1 -1.0873 -5.4807 6.6869 40 1 -1.6665 -6.8941 5.7731 41 1 -1.4536 -10.4020 7.3820 42 1 -2.1200 -9.2226 6.2161 43 1 -3.8806 -9.8726 8.8863 44 1 -4.6401 -8.3173 10.6390 45 1 -3.4449 -6.1964 11.0063 46 1 -1.4891 -5.6278 9.6211 47 1 2.3893 -5.5580 0.8302 48 1 3.0862 -4.1426 1.6556 49 1 0.9670 -4.1093 -0.5427 50 1 2.6556 -3.5610 -0.6862 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594302938.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:06 Heat of formation + Delta-G solvation = -38.748888 kcal Electronic energy + Delta-G solvation = -29494.855905 eV Core-core repulsion = 25487.066236 eV Total energy + Delta-G solvation = -4007.789668 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.30319 -39.60735 -38.06364 -37.57606 -35.07022 -33.13795 -32.69475 -31.69282 -30.89055 -30.28460 -29.86660 -27.33718 -26.29000 -24.50529 -23.67775 -22.40168 -21.94770 -21.55388 -21.02953 -20.28786 -19.14253 -17.57799 -17.31152 -17.02902 -16.81851 -16.20856 -15.88762 -15.50159 -15.30014 -14.56092 -14.43561 -14.25344 -14.14043 -13.83757 -13.61361 -13.51404 -13.47516 -13.41457 -13.18026 -12.88086 -12.51069 -12.49851 -12.28489 -12.11103 -11.76432 -11.65964 -11.63318 -11.24283 -10.91322 -10.70722 -10.43147 -10.35069 -10.32645 -10.09993 -10.03329 -9.82029 -9.72869 -9.33313 -9.26403 -8.99883 -8.97895 -8.38387 -6.88779 -6.07257 -3.23844 0.78170 0.88859 2.65300 3.09327 3.27615 3.49180 3.52349 3.62485 3.70217 3.80917 4.20398 4.46332 4.53172 4.59239 4.59562 4.78290 4.86460 4.97186 4.99784 5.05904 5.10068 5.12351 5.14514 5.23452 5.27721 5.36165 5.41778 5.52449 5.54486 5.60566 5.78734 5.84986 5.91961 5.97362 5.98984 6.01368 6.01933 6.16734 6.31594 6.40881 6.41404 6.49060 6.50564 6.51406 6.62464 6.71535 6.82353 7.06030 7.17571 7.51325 8.00428 8.24178 8.57412 9.11747 9.84469 10.29277 11.21095 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018865 B = 0.001913 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.890628 B =14632.366570 C =15513.764885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.025 4.025 3 Si 1.064 2.936 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.347 4.347 8 H 0.055 0.945 9 N -0.599 5.599 10 C 0.150 3.850 11 C -0.129 4.129 12 C -0.090 4.090 13 C 0.125 3.875 14 N -0.727 5.727 15 C 0.513 3.487 16 O -0.532 6.532 17 C -0.157 4.157 18 C 0.139 3.861 19 H 0.113 0.887 20 O -0.334 6.334 21 C 0.081 3.919 22 C -0.127 4.127 23 C -0.096 4.096 24 C -0.114 4.114 25 C -0.116 4.116 26 C -0.090 4.090 27 C -0.125 4.125 28 C -0.125 4.125 29 C 0.148 3.852 30 H 0.268 0.732 31 H 0.079 0.921 32 H 0.014 0.986 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.400 0.600 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.076 0.924 43 H 0.125 0.875 44 H 0.128 0.872 45 H 0.129 0.871 46 H 0.127 0.873 47 H 0.053 0.947 48 H 0.062 0.938 49 H 0.015 0.985 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.638 -17.261 19.072 27.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.227 4.227 3 Si 0.894 3.106 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.477 4.477 8 H 0.073 0.927 9 N -0.323 5.323 10 C 0.024 3.976 11 C -0.168 4.168 12 C -0.109 4.109 13 C 0.002 3.998 14 N -0.379 5.379 15 C 0.299 3.701 16 O -0.408 6.408 17 C -0.197 4.197 18 C 0.081 3.919 19 H 0.130 0.870 20 O -0.252 6.252 21 C 0.005 3.995 22 C -0.127 4.127 23 C -0.114 4.114 24 C -0.132 4.132 25 C -0.134 4.134 26 C -0.108 4.108 27 C -0.125 4.125 28 C -0.165 4.165 29 C 0.022 3.978 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.032 0.968 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.234 0.766 39 H 0.124 0.876 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.094 0.906 43 H 0.143 0.857 44 H 0.146 0.854 45 H 0.147 0.853 46 H 0.145 0.855 47 H 0.072 0.928 48 H 0.080 0.920 49 H 0.033 0.967 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.821 -16.104 19.196 26.249 hybrid contribution -0.518 -1.369 -0.152 1.472 sum -8.339 -17.473 19.044 27.157 Atomic orbital electron populations 1.70785 1.06570 1.30249 1.48144 1.25842 0.96558 1.01459 0.98862 0.83538 0.74795 0.76081 0.76216 1.21108 1.21981 1.22079 1.19976 0.97206 0.88388 1.42097 0.92704 1.44102 1.45984 1.01363 1.40879 1.20850 0.90383 0.98966 0.87384 1.22061 1.00783 0.94905 0.99098 1.21294 0.99471 0.95518 0.94627 1.21514 0.88287 0.99673 0.90340 1.46087 1.17321 1.50336 1.24191 1.20349 0.89336 0.78728 0.81704 1.90729 1.30870 1.45315 1.73902 1.22131 0.98233 1.02392 0.96974 1.21006 0.96656 0.83842 0.90429 0.86964 1.89348 1.27033 1.22754 1.86051 1.21860 0.84430 0.98038 0.95205 1.21116 0.96889 0.96762 0.97955 1.20417 0.95757 0.99969 0.95266 1.21169 0.99921 0.94251 0.97884 1.21171 0.95478 0.97193 0.99564 1.20478 0.96795 0.99158 0.94353 1.20997 0.98179 0.95795 0.97563 1.21975 0.97514 0.99348 0.97631 1.20879 0.97507 0.86395 0.93037 0.92097 0.90299 0.96755 0.93372 0.92176 0.91383 0.91914 0.91630 0.76551 0.87637 0.88513 0.88418 0.90606 0.85686 0.85432 0.85342 0.85475 0.92784 0.91953 0.96708 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.19 12.42 55.49 0.69 -26.50 16 2 C -0.03 -0.72 4.69 -17.43 -0.08 -0.80 16 3 Si 1.06 25.13 29.98 -169.99 -5.10 20.04 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.35 -9.65 9.49 -15.06 -0.14 -9.79 16 8 H 0.06 1.53 7.94 -52.48 -0.42 1.12 16 9 N -0.60 -14.77 2.85 -172.58 -0.49 -15.26 16 10 C 0.15 3.39 4.66 -3.93 -0.02 3.37 16 11 C -0.13 -2.27 5.23 -26.83 -0.14 -2.41 16 12 C -0.09 -1.39 2.19 -90.58 -0.20 -1.59 16 13 C 0.13 1.77 5.06 -4.04 -0.02 1.75 16 14 N -0.73 -8.94 5.27 -60.29 -0.32 -9.25 16 15 C 0.51 6.71 7.74 -10.98 -0.08 6.63 16 16 O -0.53 -9.11 15.54 -5.10 -0.08 -9.19 16 17 C -0.16 -1.49 5.37 -27.88 -0.15 -1.64 16 18 C 0.14 1.47 2.93 -27.70 -0.08 1.39 16 19 H 0.11 1.27 7.95 -51.93 -0.41 0.86 16 20 O -0.33 -4.14 10.85 -45.89 -0.50 -4.64 16 21 C 0.08 0.72 7.38 36.19 0.27 0.98 16 22 C -0.13 -1.10 6.32 -104.40 -0.66 -1.76 16 23 C -0.10 -0.68 10.04 -39.66 -0.40 -1.07 16 24 C -0.11 -0.72 10.05 -39.55 -0.40 -1.12 16 25 C -0.12 -0.76 10.05 -39.55 -0.40 -1.16 16 26 C -0.09 -0.69 10.04 -39.65 -0.40 -1.08 16 27 C -0.13 -1.14 5.62 -104.40 -0.59 -1.72 16 28 C -0.12 -2.11 5.36 -26.61 -0.14 -2.25 16 29 C 0.15 3.06 6.52 -3.71 -0.02 3.04 16 30 H 0.27 7.99 6.69 -40.82 -0.27 7.71 16 31 H 0.08 2.02 6.32 -51.93 -0.33 1.69 16 32 H 0.01 0.33 7.86 -51.93 -0.41 -0.08 16 33 H 0.05 0.73 7.15 -51.93 -0.37 0.35 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.40 4.11 7.65 -40.82 -0.31 3.80 16 39 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.10 0.80 7.97 -51.93 -0.41 0.39 16 41 H 0.10 0.71 8.14 -51.92 -0.42 0.29 16 42 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 44 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 45 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 46 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 47 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 49 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 50 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 LS Contribution 398.09 15.07 6.00 6.00 Total: -1.00 -34.02 398.09 -11.51 -45.53 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -8.06 Total: 2.53 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -3.66 Total: -9.25 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: -0.12 Total: -51.02 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: -0.58 Total: -13.83 kcal Atomic # 14 Polarization: 25.13 SS G_CDS: -5.10 Total: 20.04 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.02 -11.51 -45.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594302938.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.781 kcal (2) G-P(sol) polarization free energy of solvation -34.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds