Wall clock time and date at job start Wed Apr 1 2020 02:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99909 * 2 1 4 4 H 1.48498 * 109.47329 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.47105 * 240.00206 * 3 2 1 6 6 H 1.48503 * 109.46825 * 119.99957 * 3 2 1 7 7 C 1.38803 * 119.99736 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99888 * 155.49686 * 7 2 1 9 9 N 1.36936 * 120.00756 * 335.49342 * 7 2 1 10 10 C 1.46932 * 120.62484 * 331.82023 * 9 7 2 11 11 C 1.52761 * 109.00441 * 233.58057 * 10 9 7 12 12 C 1.53044 * 109.38356 * 305.58599 * 11 10 9 13 13 C 1.53001 * 109.44757 * 181.25391 * 12 11 10 14 14 N 1.46504 * 109.46875 * 64.93943 * 13 12 11 15 15 C 1.34779 * 119.99679 * 179.97438 * 14 13 12 16 16 O 1.21278 * 120.00092 * 0.02562 * 15 14 13 17 17 C 1.50707 * 119.99959 * 180.02562 * 15 14 13 18 18 C 1.52992 * 109.47215 * 180.02562 * 17 15 14 19 19 H 1.09004 * 110.13520 * 54.29889 * 18 17 15 20 20 O 1.43950 * 110.15475 * 292.60267 * 18 17 15 21 21 C 1.44111 * 104.85612 * 269.29910 * 20 18 17 22 22 C 1.51078 * 105.97571 * 331.54802 * 21 20 18 23 23 C 1.37968 * 132.69062 * 197.69922 * 22 21 20 24 24 C 1.38293 * 119.92335 * 180.02562 * 23 22 21 25 25 C 1.38265 * 120.04015 * 0.02562 * 24 23 22 26 26 C 1.38298 * 120.04058 * 0.02562 * 25 24 23 27 27 C 1.37977 * 119.91863 * 359.96975 * 26 25 24 28 28 C 1.53033 * 109.53734 * 61.24440 * 12 11 10 29 29 C 1.46922 * 120.63625 * 152.09452 * 9 7 2 30 30 H 0.97002 * 120.00481 * 174.24549 * 1 2 3 31 31 H 1.09003 * 109.58609 * 353.41270 * 10 9 7 32 32 H 1.08993 * 109.58780 * 113.84153 * 10 9 7 33 33 H 1.09006 * 109.56299 * 185.55064 * 11 10 9 34 34 H 1.09002 * 109.38821 * 65.51517 * 11 10 9 35 35 H 1.09003 * 109.46011 * 301.22012 * 12 11 10 36 36 H 1.08997 * 109.47330 * 184.93558 * 13 12 11 37 37 H 1.08999 * 109.47179 * 304.94318 * 13 12 11 38 38 H 0.96998 * 120.00207 * 0.02562 * 14 13 12 39 39 H 1.08997 * 109.46602 * 300.00439 * 17 15 14 40 40 H 1.09005 * 109.46649 * 60.00173 * 17 15 14 41 41 H 1.09007 * 110.13888 * 212.42743 * 21 20 18 42 42 H 1.09006 * 110.21908 * 90.71290 * 21 20 18 43 43 H 1.08000 * 120.03892 * 0.02777 * 23 22 21 44 44 H 1.08001 * 119.98222 * 179.97438 * 24 23 22 45 45 H 1.07992 * 119.98378 * 179.97438 * 25 24 23 46 46 H 1.07995 * 120.04148 * 180.02562 * 26 25 24 47 47 H 1.09000 * 109.50059 * 178.68310 * 28 12 11 48 48 H 1.09002 * 109.50022 * 58.58128 * 28 12 11 49 49 H 1.08999 * 109.58741 * 246.15851 * 29 9 7 50 50 H 1.09001 * 109.58687 * 6.44113 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1038 1.6964 -1.2125 6 1 3.1039 1.6964 1.2126 7 6 2.0101 -1.2021 -0.0005 8 1 3.0172 -1.2441 -0.3885 9 7 1.4181 -2.3349 0.4908 10 6 0.3872 -2.2483 1.5342 11 6 0.7855 -3.1479 2.7029 12 6 1.0415 -4.5661 2.1879 13 6 1.4101 -5.4756 3.3618 14 7 0.2648 -5.5915 4.2680 15 6 0.3587 -6.3484 5.3792 16 8 1.3914 -6.9332 5.6291 17 6 -0.8196 -6.4682 6.3111 18 6 -0.4510 -7.3775 7.4850 19 1 0.4558 -7.0155 7.9697 20 8 -0.2622 -8.7286 7.0256 21 6 -1.5601 -9.3437 7.1435 22 6 -2.2604 -8.6238 8.2721 23 6 -3.3562 -8.9423 9.0476 24 6 -3.7822 -8.0691 10.0317 25 6 -3.1112 -6.8779 10.2378 26 6 -2.0135 -6.5580 9.4598 27 6 -1.5884 -7.4293 8.4781 28 6 2.1920 -4.5444 1.1790 29 6 1.8058 -3.6602 -0.0109 30 1 -0.4851 -0.8358 -0.0842 31 1 0.3030 -1.2180 1.8801 32 1 -0.5696 -2.5799 1.1310 33 1 -0.0185 -3.1676 3.4388 34 1 1.6928 -2.7595 3.1656 35 1 0.1412 -4.9448 1.7039 36 1 1.6776 -6.4632 2.9862 37 1 2.2571 -5.0495 3.8994 38 1 -0.5613 -5.1241 4.0679 39 1 -1.0873 -5.4807 6.6869 40 1 -1.6665 -6.8941 5.7731 41 1 -1.4536 -10.4020 7.3820 42 1 -2.1200 -9.2226 6.2161 43 1 -3.8806 -9.8726 8.8863 44 1 -4.6401 -8.3173 10.6390 45 1 -3.4449 -6.1964 11.0063 46 1 -1.4891 -5.6278 9.6211 47 1 2.3893 -5.5580 0.8302 48 1 3.0862 -4.1426 1.6556 49 1 0.9670 -4.1093 -0.5427 50 1 2.6556 -3.5610 -0.6862 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594302938.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:05 Heat of formation + Delta-G solvation = -58.925033 kcal Electronic energy + Delta-G solvation = -29495.730808 eV Core-core repulsion = 25487.066236 eV Total energy + Delta-G solvation = -4008.664572 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.98822 -40.67011 -39.50797 -38.29023 -36.55912 -34.66721 -33.49680 -32.38748 -32.26633 -31.64960 -31.04727 -28.50559 -27.36280 -25.78148 -24.84323 -23.94366 -22.79449 -22.48126 -22.10945 -21.32902 -20.68509 -19.39578 -18.32016 -17.76709 -17.52895 -17.07689 -16.63359 -16.51133 -16.22134 -16.12934 -15.95201 -15.39522 -15.25460 -15.12367 -15.06122 -14.70896 -14.64656 -14.22369 -14.06077 -13.89923 -13.78921 -13.49516 -13.41309 -13.32033 -12.89615 -12.82880 -12.61838 -12.51991 -12.22396 -12.04018 -11.91692 -11.82588 -11.78686 -11.70038 -11.35319 -11.14640 -11.07402 -10.89385 -10.46889 -10.09008 -9.85818 -9.56995 -8.92445 -8.24211 -5.39829 0.24171 0.37564 1.57778 1.64452 1.64803 1.83751 2.15656 2.65276 2.72069 2.92416 3.19414 3.21127 3.54723 3.55609 3.68668 3.76437 3.84996 3.93804 3.96863 4.06577 4.18837 4.20915 4.38253 4.39240 4.42429 4.44365 4.53550 4.54254 4.57653 4.61856 4.67159 4.74350 4.77201 4.82381 4.91603 4.92465 5.05884 5.07856 5.11695 5.16823 5.24368 5.25530 5.39056 5.41598 5.43308 5.53373 5.57146 5.77588 5.83997 5.98820 6.40592 6.53723 7.07891 7.24929 7.79112 8.23063 9.00416 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018865 B = 0.001913 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.890628 B =14632.366570 C =15513.764885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.076 4.076 3 Si 1.113 2.887 4 H -0.290 1.290 5 H -0.277 1.277 6 H -0.282 1.282 7 C -0.355 4.355 8 H 0.047 0.953 9 N -0.620 5.620 10 C 0.155 3.845 11 C -0.116 4.116 12 C -0.077 4.077 13 C 0.137 3.863 14 N -0.720 5.720 15 C 0.512 3.488 16 O -0.576 6.576 17 C -0.146 4.146 18 C 0.137 3.863 19 H 0.093 0.907 20 O -0.368 6.368 21 C 0.077 3.923 22 C -0.140 4.140 23 C -0.101 4.101 24 C -0.115 4.115 25 C -0.120 4.120 26 C -0.099 4.099 27 C -0.141 4.141 28 C -0.116 4.116 29 C 0.143 3.857 30 H 0.255 0.745 31 H 0.042 0.958 32 H 0.009 0.991 33 H 0.078 0.922 34 H 0.045 0.955 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.053 0.947 38 H 0.413 0.587 39 H 0.130 0.870 40 H 0.113 0.887 41 H 0.107 0.893 42 H 0.086 0.914 43 H 0.145 0.855 44 H 0.153 0.847 45 H 0.151 0.849 46 H 0.138 0.862 47 H 0.084 0.916 48 H 0.052 0.948 49 H 0.018 0.982 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.893 -18.110 20.555 29.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.272 4.272 3 Si 0.937 3.063 4 H -0.216 1.216 5 H -0.203 1.203 6 H -0.208 1.208 7 C -0.485 4.485 8 H 0.065 0.935 9 N -0.345 5.345 10 C 0.029 3.971 11 C -0.155 4.155 12 C -0.096 4.096 13 C 0.013 3.987 14 N -0.372 5.372 15 C 0.300 3.700 16 O -0.456 6.456 17 C -0.186 4.186 18 C 0.079 3.921 19 H 0.111 0.889 20 O -0.287 6.287 21 C 0.001 3.999 22 C -0.140 4.140 23 C -0.119 4.119 24 C -0.133 4.133 25 C -0.137 4.137 26 C -0.117 4.117 27 C -0.141 4.141 28 C -0.155 4.155 29 C 0.018 3.982 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.026 0.974 33 H 0.096 0.904 34 H 0.064 0.936 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.249 0.751 39 H 0.148 0.852 40 H 0.132 0.868 41 H 0.125 0.875 42 H 0.104 0.896 43 H 0.162 0.838 44 H 0.171 0.829 45 H 0.169 0.831 46 H 0.156 0.844 47 H 0.102 0.898 48 H 0.071 0.929 49 H 0.036 0.964 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.092 -16.978 20.678 28.257 hybrid contribution -0.149 -1.174 -0.616 1.334 sum -9.241 -18.151 20.061 28.589 Atomic orbital electron populations 1.70898 1.07398 1.29423 1.50624 1.27142 0.96693 1.04676 0.98736 0.82880 0.73885 0.72304 0.77198 1.21635 1.20290 1.20794 1.20208 0.96946 0.89846 1.41503 0.93546 1.44372 1.46265 1.02033 1.41810 1.20748 0.89842 0.97995 0.88502 1.21882 1.01013 0.95042 0.97528 1.21144 0.99364 0.94285 0.94802 1.21234 0.88541 0.99103 0.89802 1.46000 1.17281 1.50199 1.23735 1.20941 0.89650 0.77649 0.81776 1.90713 1.32844 1.47122 1.74890 1.22118 0.96857 1.03656 0.95982 1.20964 0.96601 0.83377 0.91159 0.88908 1.89297 1.29189 1.23849 1.86347 1.22008 0.83378 0.98455 0.96025 1.21205 0.97685 0.96710 0.98434 1.20722 0.95300 1.00939 0.94968 1.21546 1.00359 0.93809 0.97555 1.21509 0.94884 0.97726 0.99615 1.20722 0.97344 0.99502 0.94132 1.20940 0.98124 0.96772 0.98280 1.21850 0.97512 0.99895 0.96278 1.21030 0.97219 0.85354 0.94621 0.93536 0.93970 0.97353 0.90390 0.93628 0.90246 0.91687 0.92907 0.75077 0.85200 0.86837 0.87454 0.89626 0.83750 0.82924 0.83127 0.84389 0.89773 0.92932 0.96366 0.93385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.03 12.42 21.65 0.27 -56.76 16 2 C -0.08 -4.34 4.69 84.86 0.40 -3.94 16 3 Si 1.11 51.14 29.98 68.60 2.06 53.19 16 4 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 5 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.36 -20.03 9.49 84.03 0.80 -19.23 16 8 H 0.05 2.64 7.94 -2.91 -0.02 2.62 16 9 N -0.62 -30.90 2.85 -699.93 -2.00 -32.90 16 10 C 0.15 7.04 4.66 86.22 0.40 7.44 16 11 C -0.12 -3.95 5.23 30.53 0.16 -3.79 16 12 C -0.08 -2.23 2.19 -10.77 -0.02 -2.26 16 13 C 0.14 3.63 5.06 86.38 0.44 4.07 16 14 N -0.72 -16.21 5.27 -463.05 -2.44 -18.65 16 15 C 0.51 12.81 7.74 87.66 0.68 13.49 16 16 O -0.58 -19.74 15.54 7.17 0.11 -19.63 16 17 C -0.15 -2.55 5.37 29.85 0.16 -2.39 16 18 C 0.14 2.87 2.93 29.96 0.09 2.95 16 19 H 0.09 2.20 7.95 -2.38 -0.02 2.18 16 20 O -0.37 -9.19 10.85 -138.79 -1.51 -10.70 16 21 C 0.08 1.31 7.38 71.36 0.53 1.83 16 22 C -0.14 -2.23 6.32 -19.72 -0.12 -2.36 16 23 C -0.10 -1.20 10.04 22.22 0.22 -0.98 16 24 C -0.11 -1.13 10.05 22.29 0.22 -0.90 16 25 C -0.12 -1.26 10.05 22.29 0.22 -1.04 16 26 C -0.10 -1.35 10.04 22.22 0.22 -1.13 16 27 C -0.14 -2.42 5.62 -19.72 -0.11 -2.53 16 28 C -0.12 -3.74 5.36 30.67 0.16 -3.57 16 29 C 0.14 5.86 6.52 86.36 0.56 6.42 16 30 H 0.25 15.64 6.69 -92.71 -0.62 15.02 16 31 H 0.04 2.21 6.32 -2.39 -0.02 2.20 16 32 H 0.01 0.39 7.86 -2.39 -0.02 0.37 16 33 H 0.08 2.18 7.15 -2.38 -0.02 2.17 16 34 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.41 7.29 7.65 -92.71 -0.71 6.58 16 39 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.11 1.62 7.97 -2.38 -0.02 1.60 16 41 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 42 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 43 H 0.14 1.04 8.06 -2.91 -0.02 1.02 16 44 H 0.15 0.67 8.06 -2.91 -0.02 0.65 16 45 H 0.15 0.85 8.06 -2.91 -0.02 0.82 16 46 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 47 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 48 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 49 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 50 H 0.05 2.00 7.93 -2.39 -0.02 1.98 16 Total: -1.00 -76.04 398.09 1.88 -74.16 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.37 Total: 19.18 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: 5.01 Total: -7.90 kcal Atomic # 7 Polarization: -104.14 SS G_CDS: -4.17 Total: -108.31 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -1.39 Total: -30.32 kcal Atomic # 14 Polarization: 51.14 SS G_CDS: 2.06 Total: 53.19 kcal Total: -76.04 1.88 -74.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594302938.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.236 kcal (2) G-P(sol) polarization free energy of solvation -76.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds