Wall clock time and date at job start Wed Apr 1 2020 02:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86810 * 119.99876 * 2 1 4 4 H 1.48493 * 109.47005 * 269.99975 * 3 2 1 5 5 H 1.48501 * 109.47040 * 29.99913 * 3 2 1 6 6 H 1.48500 * 109.46752 * 149.99767 * 3 2 1 7 7 C 1.38804 * 120.00247 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00288 * 163.08058 * 7 2 1 9 9 N 1.36939 * 119.99958 * 343.08098 * 7 2 1 10 10 C 1.46920 * 120.63092 * 151.55029 * 9 7 2 11 11 C 1.53629 * 108.54330 * 126.37237 * 10 9 7 12 12 C 1.53038 * 109.24300 * 54.85202 * 11 10 9 13 13 C 1.53036 * 109.54003 * 298.51702 * 12 11 10 14 14 H 1.08996 * 109.49733 * 301.41024 * 13 12 11 15 15 C 1.52999 * 109.49834 * 181.31267 * 13 12 11 16 16 N 1.46494 * 109.47388 * 175.15957 * 15 13 12 17 17 C 1.34774 * 120.00236 * 180.02562 * 16 15 13 18 18 O 1.21285 * 119.99832 * 0.02562 * 17 16 15 19 19 C 1.50701 * 120.00351 * 180.02562 * 17 16 15 20 20 C 1.52992 * 109.47323 * 180.02562 * 19 17 16 21 21 H 1.08997 * 110.13412 * 55.24541 * 20 19 17 22 22 O 1.43943 * 110.15430 * 293.54386 * 20 19 17 23 23 C 1.43945 * 104.95357 * 212.43841 * 22 20 19 24 24 C 1.51082 * 105.95425 * 28.44472 * 23 22 20 25 25 C 1.37967 * 132.68866 * 162.31326 * 24 23 22 26 26 C 1.38288 * 119.92144 * 179.97438 * 25 24 23 27 27 C 1.38268 * 120.04242 * 0.02562 * 26 25 24 28 28 C 1.38292 * 120.04146 * 359.97438 * 27 26 25 29 29 C 1.37971 * 119.91460 * 0.04122 * 28 27 26 30 30 C 1.46924 * 120.62993 * 331.83412 * 9 7 2 31 31 H 0.97001 * 120.00021 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.59296 * 246.20514 * 10 9 7 33 33 H 1.08998 * 109.58990 * 6.63087 * 10 9 7 34 34 H 1.09004 * 109.62970 * 294.86140 * 11 10 9 35 35 H 1.08998 * 109.45814 * 174.74462 * 11 10 9 36 36 H 1.09003 * 109.46280 * 178.48821 * 12 11 10 37 37 H 1.09005 * 109.45234 * 58.53476 * 12 11 10 38 38 H 1.08997 * 109.47177 * 295.16322 * 15 13 12 39 39 H 1.09012 * 109.46834 * 55.15930 * 15 13 12 40 40 H 0.97004 * 119.99978 * 359.97438 * 16 15 13 41 41 H 1.09006 * 109.46581 * 300.00126 * 19 17 16 42 42 H 1.09003 * 109.46930 * 59.99393 * 19 17 16 43 43 H 1.08998 * 110.15470 * 147.56165 * 23 22 20 44 44 H 1.08994 * 110.15552 * 269.32139 * 23 22 20 45 45 H 1.08004 * 120.03872 * 359.97280 * 25 24 23 46 46 H 1.08006 * 119.98157 * 179.97438 * 26 25 24 47 47 H 1.07997 * 119.98245 * 179.97438 * 27 26 25 48 48 H 1.07997 * 120.04249 * 179.97438 * 28 27 26 49 49 H 1.09001 * 109.58627 * 353.37206 * 30 9 7 50 50 H 1.08997 * 109.58757 * 113.65672 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2717 9 7 1.3701 -2.3622 0.3462 10 6 1.8101 -3.6521 -0.2025 11 6 2.0672 -4.6173 0.9647 12 6 0.8120 -4.7007 1.8361 13 6 0.4976 -3.3191 2.4143 14 1 1.3473 -2.9677 2.9995 15 6 -0.7385 -3.4102 3.3115 16 7 -0.9710 -2.1151 3.9554 17 6 -2.0123 -1.9580 4.7965 18 8 -2.7565 -2.8890 5.0207 19 6 -2.2519 -0.6255 5.4585 20 6 -3.4870 -0.7170 6.3567 21 1 -3.3717 -1.5319 7.0713 22 8 -4.6671 -0.9210 5.5580 23 6 -5.7202 -0.2490 6.2730 24 6 -5.0548 0.8738 7.0339 25 6 -5.5426 2.0211 7.6249 26 6 -4.6775 2.8869 8.2685 27 6 -3.3251 2.6036 8.3193 28 6 -2.8360 1.4536 7.7269 29 6 -3.6992 0.5900 7.0845 30 6 0.2262 -2.3399 1.2679 31 1 -0.4850 0.8400 -0.0004 32 1 1.0336 -4.0574 -0.8511 33 1 2.7288 -3.5126 -0.7722 34 1 2.9023 -4.2537 1.5635 35 1 2.3044 -5.6063 0.5725 36 1 0.9812 -5.4053 2.6504 37 1 -0.0283 -5.0408 1.2307 38 1 -1.6063 -3.6772 2.7084 39 1 -0.5781 -4.1719 4.0747 40 1 -0.3751 -1.3707 3.7770 41 1 -1.3839 -0.3579 6.0611 42 1 -2.4128 0.1357 4.6951 43 1 -6.4519 0.1540 5.5727 44 1 -6.2027 -0.9381 6.9660 45 1 -6.5989 2.2427 7.5850 46 1 -5.0583 3.7856 8.7312 47 1 -2.6503 3.2806 8.8218 48 1 -1.7797 1.2325 7.7661 49 1 0.0994 -1.3342 1.6687 50 1 -0.6774 -2.6379 0.7362 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594422070.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:03 Heat of formation + Delta-G solvation = -36.895777 kcal Electronic energy + Delta-G solvation = -30060.395893 eV Core-core repulsion = 26052.686582 eV Total energy + Delta-G solvation = -4007.709311 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.01533 -39.30837 -37.77967 -37.36164 -34.55342 -33.07219 -32.80485 -31.47887 -31.00701 -30.16567 -29.69380 -26.65341 -25.36978 -25.14967 -24.10952 -22.16728 -21.81916 -21.35364 -20.70599 -19.96311 -18.98713 -17.38644 -16.87535 -16.65611 -16.34756 -16.00690 -15.72794 -15.28139 -15.14921 -14.86216 -14.41886 -14.08015 -13.87671 -13.64307 -13.57947 -13.50798 -13.09669 -12.93673 -12.87337 -12.50049 -12.35721 -12.25095 -12.15777 -12.09281 -11.69985 -11.43877 -11.20324 -11.10918 -11.02651 -10.72157 -10.49532 -10.25174 -10.16652 -10.10914 -9.93183 -9.70998 -9.47501 -9.40969 -9.16373 -8.80158 -8.64118 -8.49443 -6.67808 -5.81224 -3.24205 0.95887 1.05390 2.96505 3.33507 3.36582 3.41381 3.43191 3.53908 3.77254 3.97702 4.41664 4.46318 4.62804 4.72492 4.85066 5.03541 5.10021 5.16872 5.18840 5.27461 5.29240 5.29832 5.33369 5.54742 5.58649 5.60023 5.60828 5.61463 5.74245 5.81331 5.83619 6.00380 6.07924 6.13979 6.15305 6.17445 6.31014 6.32247 6.42959 6.50803 6.59646 6.67101 6.71257 6.78062 6.86278 6.87337 7.01803 7.31432 7.61561 7.76641 7.87789 8.42137 8.56629 9.18713 9.82092 10.39981 11.26465 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011263 B = 0.002760 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.485369 B =10141.655433 C =11870.875515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.899 3.101 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.143 3.857 11 C -0.133 4.133 12 C -0.100 4.100 13 C -0.127 4.127 14 H 0.069 0.931 15 C 0.132 3.868 16 N -0.721 5.721 17 C 0.514 3.486 18 O -0.540 6.540 19 C -0.141 4.141 20 C 0.141 3.859 21 H 0.092 0.908 22 O -0.337 6.337 23 C 0.087 3.913 24 C -0.128 4.128 25 C -0.096 4.096 26 C -0.117 4.117 27 C -0.117 4.117 28 C -0.091 4.091 29 C -0.124 4.124 30 C 0.179 3.821 31 H 0.254 0.746 32 H 0.017 0.983 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.047 0.953 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.405 0.595 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.096 0.904 44 H 0.077 0.923 45 H 0.125 0.875 46 H 0.127 0.873 47 H 0.128 0.872 48 H 0.127 0.873 49 H 0.087 0.913 50 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.140 1.800 17.079 18.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.728 3.272 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.382 4.382 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.016 3.984 11 C -0.172 4.172 12 C -0.139 4.139 13 C -0.147 4.147 14 H 0.087 0.913 15 C 0.008 3.992 16 N -0.373 5.373 17 C 0.300 3.700 18 O -0.418 6.418 19 C -0.181 4.181 20 C 0.083 3.917 21 H 0.109 0.891 22 O -0.255 6.255 23 C 0.010 3.990 24 C -0.128 4.128 25 C -0.114 4.114 26 C -0.135 4.135 27 C -0.135 4.135 28 C -0.109 4.109 29 C -0.125 4.125 30 C 0.053 3.947 31 H 0.064 0.936 32 H 0.035 0.965 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.240 0.760 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.115 0.885 44 H 0.094 0.906 45 H 0.143 0.857 46 H 0.145 0.855 47 H 0.146 0.854 48 H 0.145 0.855 49 H 0.105 0.895 50 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -7.786 1.146 16.990 18.725 hybrid contribution 0.699 1.478 0.011 1.635 sum -7.087 2.623 17.001 18.605 Atomic orbital electron populations 1.70042 1.05134 1.25455 1.53882 1.25044 0.95259 0.98301 1.01002 0.86360 0.79178 0.83794 0.77836 1.21393 1.21556 1.20505 1.19176 0.92543 0.84796 1.41672 0.91767 1.44056 1.36039 1.01704 1.49723 1.21021 0.97494 0.86978 0.92858 1.22063 0.97355 0.98904 0.98876 1.21336 0.98306 0.95789 0.98427 1.22126 0.95958 0.98219 0.98445 0.91294 1.21357 0.98560 0.84201 0.95105 1.46040 1.30071 1.15039 1.46107 1.20329 0.80483 0.89790 0.79418 1.90692 1.45860 1.42319 1.62908 1.21830 0.98106 0.97356 1.00765 1.21017 0.86338 0.92842 0.91518 0.89072 1.89282 1.16807 1.74370 1.45036 1.21785 0.91267 0.90821 0.95135 1.21141 0.95288 0.96557 0.99859 1.20404 1.00055 0.93026 0.97930 1.21145 0.93557 0.99420 0.99332 1.21154 0.95685 0.97009 0.99616 1.20466 0.99485 0.93646 0.97307 1.21082 0.94735 0.96914 0.99745 1.20792 0.88734 0.97623 0.87534 0.93633 0.96475 0.92933 0.92447 0.93138 0.93456 0.92495 0.91824 0.92502 0.76046 0.87678 0.87668 0.88549 0.90564 0.85740 0.85534 0.85433 0.85524 0.89485 0.96339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.34 11.20 55.49 0.62 -24.72 16 2 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 3 Si 0.90 21.00 29.59 -169.99 -5.03 15.97 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.25 -6.74 9.58 -15.06 -0.14 -6.89 16 8 H 0.06 1.70 7.89 -52.49 -0.41 1.28 16 9 N -0.59 -14.50 2.99 -172.06 -0.51 -15.02 16 10 C 0.14 2.97 6.54 -3.49 -0.02 2.95 16 11 C -0.13 -2.27 6.10 -26.38 -0.16 -2.43 16 12 C -0.10 -1.66 5.16 -26.69 -0.14 -1.80 16 13 C -0.13 -2.29 2.38 -90.50 -0.21 -2.50 16 14 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 15 C 0.13 2.23 5.07 -4.05 -0.02 2.20 16 16 N -0.72 -11.60 5.33 -60.29 -0.32 -11.92 16 17 C 0.51 8.37 7.73 -10.99 -0.08 8.28 16 18 O -0.54 -10.56 15.52 -6.40 -0.10 -10.65 16 19 C -0.14 -1.80 5.35 -27.89 -0.15 -1.95 16 20 C 0.14 1.83 2.85 -27.70 -0.08 1.75 16 21 H 0.09 1.20 7.98 -51.93 -0.41 0.79 16 22 O -0.34 -5.08 10.76 -47.19 -0.51 -5.59 16 23 C 0.09 0.97 7.63 36.19 0.28 1.24 16 24 C -0.13 -1.40 6.32 -104.40 -0.66 -2.06 16 25 C -0.10 -0.86 10.04 -39.66 -0.40 -1.26 16 26 C -0.12 -0.95 10.05 -39.55 -0.40 -1.35 16 27 C -0.12 -0.98 10.05 -39.55 -0.40 -1.38 16 28 C -0.09 -0.87 9.82 -39.66 -0.39 -1.26 16 29 C -0.12 -1.41 5.72 -104.40 -0.60 -2.01 16 30 C 0.18 4.07 4.38 -3.71 -0.02 4.06 16 31 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 40 H 0.40 6.22 7.70 -40.82 -0.31 5.91 16 41 H 0.11 1.02 7.93 -51.93 -0.41 0.61 16 42 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.12 0.84 8.06 -52.48 -0.42 0.41 16 46 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 47 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 48 H 0.13 0.98 7.93 -52.49 -0.42 0.56 16 49 H 0.09 2.14 5.26 -51.93 -0.27 1.87 16 50 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 399.21 15.07 6.02 6.02 Total: -1.00 -32.56 399.21 -11.65 -44.21 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -8.13 Total: 6.13 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -3.68 Total: -4.41 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: -0.21 Total: -51.66 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.61 Total: -16.25 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.56 -11.65 -44.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594422070.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.316 kcal (2) G-P(sol) polarization free energy of solvation -32.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds