Wall clock time and date at job start Wed Apr 1 2020 02:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99998 * 2 1 4 4 H 1.48494 * 109.47170 * 269.99993 * 3 2 1 5 5 H 1.48502 * 109.47238 * 30.00481 * 3 2 1 6 6 H 1.48502 * 109.46867 * 150.00122 * 3 2 1 7 7 C 1.38802 * 119.99724 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00108 * 197.35543 * 7 2 1 9 9 N 1.36939 * 120.00247 * 17.35815 * 7 2 1 10 10 C 1.46928 * 120.63028 * 27.68195 * 9 7 2 11 11 C 1.53194 * 108.77708 * 126.38976 * 10 9 7 12 12 C 1.53039 * 109.31229 * 54.63584 * 11 10 9 13 13 C 1.53048 * 109.53557 * 298.63351 * 12 11 10 14 14 H 1.08996 * 109.49961 * 301.37827 * 13 12 11 15 15 C 1.53004 * 109.49260 * 181.31384 * 13 12 11 16 16 N 1.46503 * 109.46649 * 175.06335 * 15 13 12 17 17 C 1.34776 * 119.99657 * 179.97438 * 16 15 13 18 18 O 1.21277 * 120.00459 * 0.02562 * 17 16 15 19 19 C 1.50708 * 119.99940 * 180.02562 * 17 16 15 20 20 C 1.52994 * 109.47012 * 180.02562 * 19 17 16 21 21 H 1.08996 * 110.13581 * 306.70192 * 20 19 17 22 22 O 1.43945 * 110.15448 * 68.47739 * 20 19 17 23 23 C 1.43784 * 105.03556 * 90.87441 * 22 20 19 24 24 C 1.51084 * 106.03527 * 28.12025 * 23 22 20 25 25 C 1.37972 * 132.68589 * 162.37366 * 24 23 22 26 26 C 1.38294 * 119.92197 * 180.30081 * 25 24 23 27 27 C 1.38265 * 120.03681 * 359.97438 * 26 25 24 28 28 C 1.38290 * 120.04251 * 0.02562 * 27 26 25 29 29 C 1.37971 * 119.92173 * 359.97438 * 28 27 26 30 30 C 1.46940 * 120.60507 * 207.65779 * 9 7 2 31 31 H 0.96998 * 119.99516 * 359.97438 * 1 2 3 32 32 H 1.09008 * 109.58308 * 6.60131 * 10 9 7 33 33 H 1.09002 * 109.58529 * 246.17777 * 10 9 7 34 34 H 1.09003 * 109.49435 * 294.68253 * 11 10 9 35 35 H 1.08992 * 109.52170 * 174.60370 * 11 10 9 36 36 H 1.08995 * 109.45864 * 178.61971 * 12 11 10 37 37 H 1.09000 * 109.45958 * 58.65500 * 12 11 10 38 38 H 1.09001 * 109.47077 * 55.06970 * 15 13 12 39 39 H 1.08996 * 109.47605 * 295.06343 * 15 13 12 40 40 H 0.96999 * 120.00443 * 0.02562 * 16 15 13 41 41 H 1.09001 * 109.46836 * 60.00444 * 19 17 16 42 42 H 1.08996 * 109.46867 * 300.00417 * 19 17 16 43 43 H 1.09000 * 109.82305 * 269.12937 * 23 22 20 44 44 H 1.08993 * 110.40440 * 147.42319 * 23 22 20 45 45 H 1.08006 * 120.03971 * 0.30402 * 25 24 23 46 46 H 1.07991 * 119.98086 * 180.02562 * 26 25 24 47 47 H 1.07996 * 119.97490 * 180.02562 * 27 26 25 48 48 H 1.08008 * 120.04121 * 179.97438 * 28 27 26 49 49 H 1.09005 * 109.55674 * 113.81210 * 30 9 7 50 50 H 1.08998 * 109.61373 * 353.38162 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0533 -1.2236 0.2784 9 7 1.3723 -2.3609 -0.3549 10 6 0.2278 -2.3338 -1.2759 11 6 0.5009 -3.3031 -2.4303 12 6 0.8189 -4.6886 -1.8635 13 6 2.0746 -4.6092 -0.9921 14 1 2.9085 -4.2393 -1.5885 15 6 2.4104 -6.0010 -0.4524 16 7 3.6760 -5.9470 0.2836 17 6 4.1731 -7.0634 0.8519 18 8 3.5731 -8.1127 0.7537 19 6 5.4747 -7.0078 1.6096 20 6 5.8106 -8.3995 2.1491 21 1 4.9709 -8.7924 2.7223 22 8 6.1308 -9.2884 1.0632 23 6 7.5541 -9.1735 0.8945 24 6 8.1068 -8.8044 2.2513 25 6 9.3749 -8.8612 2.7918 26 6 9.5882 -8.4516 4.0954 27 6 8.5319 -7.9853 4.8559 28 6 7.2608 -7.9284 4.3142 29 6 7.0480 -8.3370 3.0137 30 6 1.8201 -3.6546 0.1787 31 1 -0.4849 0.8401 0.0004 32 1 0.0985 -1.3252 -1.6684 33 1 -0.6744 -2.6408 -0.7467 34 1 1.3496 -2.9448 -3.0131 35 1 -0.3794 -3.3650 -3.0699 36 1 0.9896 -5.3860 -2.6835 37 1 -0.0202 -5.0356 -1.2605 38 1 2.5029 -6.7003 -1.2834 39 1 1.6156 -6.3333 0.2154 40 1 4.1558 -5.1077 0.3625 41 1 5.3819 -6.3083 2.4404 42 1 6.2697 -6.6756 0.9420 43 1 7.7785 -8.3892 0.1716 44 1 7.9753 -10.1225 0.5629 45 1 10.2002 -9.2250 2.1975 46 1 10.5805 -8.4953 4.5192 47 1 8.6996 -7.6653 5.8736 48 1 6.4355 -7.5645 4.9085 49 1 1.0479 -4.0690 0.8269 50 1 2.7411 -3.5177 0.7454 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594422071.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:06 Heat of formation + Delta-G solvation = -36.819264 kcal Electronic energy + Delta-G solvation = -29641.833627 eV Core-core repulsion = 25634.127633 eV Total energy + Delta-G solvation = -4007.705994 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.24571 -39.48918 -37.89648 -37.48982 -34.76638 -33.04661 -32.65934 -31.63170 -30.82966 -30.45397 -29.90460 -27.01261 -25.45349 -25.22667 -24.05398 -22.15386 -21.89160 -21.50329 -20.87337 -20.19902 -19.04099 -17.40664 -16.96593 -16.87838 -16.54190 -16.12856 -15.79537 -15.40548 -15.25449 -14.83612 -14.47775 -14.27957 -14.05051 -13.78364 -13.56013 -13.46247 -13.34948 -13.14206 -12.83805 -12.75056 -12.37768 -12.30258 -12.21723 -12.17518 -11.86436 -11.57440 -11.29438 -11.17655 -11.03157 -10.74309 -10.49764 -10.27877 -10.23492 -10.18692 -9.96538 -9.82593 -9.55068 -9.43363 -9.26736 -8.92822 -8.86768 -8.48803 -6.70303 -5.81459 -3.24266 0.84332 0.94974 2.75776 3.18881 3.34925 3.35553 3.41766 3.42950 3.68668 3.88139 4.27748 4.45593 4.53577 4.61719 4.65240 4.87152 4.94981 5.03913 5.07628 5.13997 5.16669 5.19250 5.29781 5.36702 5.44040 5.47330 5.48311 5.60734 5.61955 5.68015 5.83899 5.97427 5.98163 6.01005 6.04373 6.07657 6.23924 6.33353 6.37742 6.48077 6.55191 6.57681 6.58391 6.70122 6.77248 6.85432 6.95695 7.38612 7.63258 7.65848 7.75947 8.35050 8.41836 9.18180 9.81823 10.38612 11.26748 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013181 B = 0.002236 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.736718 B =12519.424059 C =14075.899513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.169 3.831 11 C -0.142 4.142 12 C -0.100 4.100 13 C -0.117 4.117 14 H 0.072 0.928 15 C 0.128 3.872 16 N -0.726 5.726 17 C 0.514 3.486 18 O -0.535 6.535 19 C -0.157 4.157 20 C 0.140 3.860 21 H 0.113 0.887 22 O -0.335 6.335 23 C 0.082 3.918 24 C -0.127 4.127 25 C -0.096 4.096 26 C -0.115 4.115 27 C -0.116 4.116 28 C -0.090 4.090 29 C -0.124 4.124 30 C 0.154 3.846 31 H 0.254 0.746 32 H 0.086 0.914 33 H 0.017 0.983 34 H 0.053 0.947 35 H 0.049 0.951 36 H 0.047 0.953 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.402 0.598 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.075 0.925 44 H 0.098 0.902 45 H 0.125 0.875 46 H 0.127 0.873 47 H 0.128 0.872 48 H 0.128 0.872 49 H 0.018 0.982 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.871 -16.642 4.773 24.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.383 4.383 8 H 0.083 0.917 9 N -0.314 5.314 10 C 0.043 3.957 11 C -0.181 4.181 12 C -0.138 4.138 13 C -0.138 4.138 14 H 0.091 0.909 15 C 0.004 3.996 16 N -0.378 5.378 17 C 0.300 3.700 18 O -0.412 6.412 19 C -0.198 4.198 20 C 0.081 3.919 21 H 0.131 0.869 22 O -0.253 6.253 23 C 0.006 3.994 24 C -0.128 4.128 25 C -0.114 4.114 26 C -0.133 4.133 27 C -0.134 4.134 28 C -0.108 4.108 29 C -0.125 4.125 30 C 0.028 3.972 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.036 0.964 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.237 0.763 41 H 0.124 0.876 42 H 0.115 0.885 43 H 0.093 0.907 44 H 0.116 0.884 45 H 0.143 0.857 46 H 0.145 0.855 47 H 0.146 0.854 48 H 0.146 0.854 49 H 0.036 0.964 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 16.149 -17.371 4.584 24.157 hybrid contribution 0.852 1.551 0.148 1.776 sum 17.001 -15.820 4.733 23.700 Atomic orbital electron populations 1.70045 1.05265 1.25510 1.53726 1.25040 0.95284 0.98420 1.00912 0.86294 0.79078 0.83710 0.77689 1.21454 1.21772 1.20463 1.19166 0.92634 0.84912 1.41623 0.91738 1.44054 1.35873 1.01189 1.50317 1.20807 0.88516 0.98424 0.87948 1.22171 1.00092 0.95959 0.99868 1.21343 0.96763 0.97711 0.97989 1.21950 0.98790 0.93651 0.99405 0.90945 1.21441 0.84847 0.97845 0.95449 1.46087 1.24980 1.11476 1.55226 1.20326 0.86516 0.83787 0.79407 1.90717 1.60814 1.29643 1.59977 1.22129 0.96838 0.98883 1.01916 1.21021 0.95130 0.89388 0.86343 0.86913 1.89265 1.20179 1.63477 1.52360 1.21803 0.82258 1.02326 0.93059 1.21130 0.94435 1.00413 0.96795 1.20413 0.95387 1.00209 0.95429 1.21161 0.99290 0.98834 0.93998 1.21167 0.92419 0.99664 1.00164 1.20484 0.97596 0.99239 0.93452 1.21006 0.95969 1.00390 0.95107 1.20896 0.97402 0.86809 0.92125 0.93612 0.89533 0.96447 0.92784 0.93181 0.93436 0.92477 0.92057 0.91662 0.76331 0.87559 0.88512 0.90698 0.88441 0.85724 0.85477 0.85365 0.85440 0.96365 0.93192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.87 11.19 55.49 0.62 -25.25 16 2 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 3 Si 0.90 21.29 29.59 -169.99 -5.03 16.26 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.25 -6.77 9.58 -15.06 -0.14 -6.91 16 8 H 0.06 1.67 7.89 -52.49 -0.41 1.26 16 9 N -0.59 -14.41 3.00 -172.30 -0.52 -14.92 16 10 C 0.17 3.97 5.31 -3.71 -0.02 3.95 16 11 C -0.14 -2.66 6.08 -26.61 -0.16 -2.82 16 12 C -0.10 -1.65 5.17 -26.69 -0.14 -1.78 16 13 C -0.12 -1.92 2.37 -90.49 -0.21 -2.13 16 14 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 15 C 0.13 1.88 5.07 -4.04 -0.02 1.86 16 16 N -0.73 -9.59 5.33 -60.29 -0.32 -9.92 16 17 C 0.51 7.08 7.75 -10.98 -0.09 6.99 16 18 O -0.53 -9.40 15.57 -3.41 -0.05 -9.45 16 19 C -0.16 -1.62 5.37 -27.88 -0.15 -1.77 16 20 C 0.14 1.55 2.93 -27.70 -0.08 1.47 16 21 H 0.11 1.34 7.92 -51.93 -0.41 0.93 16 22 O -0.33 -4.30 10.89 -44.21 -0.48 -4.78 16 23 C 0.08 0.76 7.38 36.19 0.27 1.03 16 24 C -0.13 -1.17 6.32 -104.40 -0.66 -1.83 16 25 C -0.10 -0.73 10.04 -39.66 -0.40 -1.12 16 26 C -0.11 -0.79 10.05 -39.55 -0.40 -1.18 16 27 C -0.12 -0.83 10.05 -39.55 -0.40 -1.23 16 28 C -0.09 -0.74 10.04 -39.66 -0.40 -1.14 16 29 C -0.12 -1.20 5.62 -104.40 -0.59 -1.79 16 30 C 0.15 3.07 5.60 -3.70 -0.02 3.05 16 31 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.09 2.29 6.04 -51.92 -0.31 1.97 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.40 4.70 7.70 -40.82 -0.31 4.38 16 41 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.10 0.88 7.96 -51.93 -0.41 0.47 16 43 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 46 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 47 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 48 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 49 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.05 0.94 7.14 -51.93 -0.37 0.57 16 LS Contribution 399.41 15.07 6.02 6.02 Total: -1.00 -32.79 399.41 -11.59 -44.38 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -8.14 Total: 3.04 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -3.69 Total: -5.38 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: -0.22 Total: -50.09 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.53 Total: -14.23 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.79 -11.59 -44.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594422071.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.563 kcal (2) G-P(sol) polarization free energy of solvation -32.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds