Wall clock time and date at job start Wed Apr 1 2020 02:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86807 * 119.99922 * 2 1 4 4 H 1.48501 * 109.46776 * 272.94784 * 3 2 1 5 5 H 1.48497 * 109.46997 * 32.94659 * 3 2 1 6 6 H 1.48493 * 109.46817 * 152.94855 * 3 2 1 7 7 C 1.38809 * 120.00206 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99952 * 339.34707 * 7 2 1 9 9 N 1.36930 * 120.00330 * 159.34702 * 7 2 1 10 10 C 1.46932 * 120.62761 * 332.63041 * 9 7 2 11 11 C 1.53189 * 108.77344 * 233.60768 * 10 9 7 12 12 C 1.53043 * 109.31615 * 305.36222 * 11 10 9 13 13 C 1.53042 * 109.53223 * 61.36656 * 12 11 10 14 14 H 1.08997 * 109.50305 * 58.62442 * 13 12 11 15 15 C 1.53007 * 109.49729 * 178.68740 * 13 12 11 16 16 N 1.46499 * 109.47236 * 184.99983 * 15 13 12 17 17 C 1.34775 * 119.99907 * 179.97438 * 16 15 13 18 18 O 1.21288 * 119.99960 * 0.02562 * 17 16 15 19 19 C 1.50702 * 120.00082 * 179.97438 * 17 16 15 20 20 C 1.52998 * 109.47186 * 179.97438 * 19 17 16 21 21 H 1.09003 * 110.13615 * 306.70250 * 20 19 17 22 22 O 1.43948 * 110.15329 * 68.47078 * 20 19 17 23 23 C 1.43945 * 104.94740 * 147.56273 * 22 20 19 24 24 C 1.51089 * 105.95674 * 331.55818 * 23 22 20 25 25 C 1.37963 * 132.68304 * 197.69080 * 24 23 22 26 26 C 1.38293 * 119.91566 * 180.02562 * 25 24 23 27 27 C 1.38261 * 120.04564 * 359.97438 * 26 25 24 28 28 C 1.38299 * 120.03556 * 0.04298 * 27 26 25 29 29 C 1.37961 * 119.92217 * 359.95950 * 28 27 26 30 30 C 1.46928 * 120.63389 * 152.62825 * 9 7 2 31 31 H 0.96995 * 119.99711 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.58765 * 113.81765 * 10 9 7 33 33 H 1.08997 * 109.70558 * 353.46423 * 10 9 7 34 34 H 1.08996 * 109.49764 * 185.41478 * 11 10 9 35 35 H 1.09005 * 109.52792 * 65.33189 * 11 10 9 36 36 H 1.08997 * 109.45912 * 301.35151 * 12 11 10 37 37 H 1.09000 * 109.46540 * 181.38366 * 12 11 10 38 38 H 1.09000 * 109.47367 * 64.99703 * 15 13 12 39 39 H 1.09003 * 109.46920 * 305.00206 * 15 13 12 40 40 H 0.97003 * 120.00275 * 359.97438 * 16 15 13 41 41 H 1.08995 * 109.46786 * 300.00249 * 19 17 16 42 42 H 1.09000 * 109.46965 * 59.99957 * 19 17 16 43 43 H 1.08990 * 110.15587 * 212.43128 * 23 22 20 44 44 H 1.09005 * 110.21075 * 90.70669 * 23 22 20 45 45 H 1.08004 * 120.04188 * 0.02562 * 25 24 23 46 46 H 1.08005 * 119.97910 * 179.97438 * 26 25 24 47 47 H 1.07990 * 119.98201 * 180.02562 * 27 26 25 48 48 H 1.08004 * 120.03268 * 179.97438 * 28 27 26 49 49 H 1.08996 * 109.58492 * 6.60826 * 30 9 7 50 50 H 1.08995 * 109.58546 * 246.17736 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4354 2.0824 -1.3983 5 1 1.4803 2.6339 0.7614 6 1 3.5775 1.4230 0.6367 7 6 2.0104 -1.2021 0.0005 8 1 1.5224 -2.1072 0.3308 9 7 3.3137 -1.2404 -0.4177 10 6 3.8174 -0.2594 -1.3887 11 6 4.4618 -1.0098 -2.5585 12 6 5.5285 -1.9662 -2.0203 13 6 4.8747 -2.9910 -1.0905 14 1 4.1084 -3.5410 -1.6367 15 6 5.9365 -3.9666 -0.5787 16 7 5.2929 -5.0169 0.2143 17 6 6.0372 -5.9938 0.7694 18 8 7.2399 -6.0032 0.6127 19 6 5.3752 -7.0739 1.5856 20 6 6.4368 -8.0503 2.0962 21 1 7.0395 -8.4174 1.2655 22 8 7.2756 -7.4051 3.0721 23 6 7.6458 -8.4489 3.9916 24 6 6.5130 -9.4483 3.9635 25 6 6.1376 -10.4609 4.8220 26 6 5.0284 -11.2346 4.5328 27 6 4.2963 -10.9933 3.3850 28 6 4.6729 -9.9784 2.5243 29 6 5.7794 -9.2066 2.8127 30 6 4.2350 -2.2632 0.0960 31 1 -0.4849 0.8400 -0.0004 32 1 4.5600 0.3795 -0.9109 33 1 2.9924 0.3509 -1.7562 34 1 4.9243 -0.2947 -3.2388 35 1 3.6992 -1.5780 -3.0912 36 1 6.2779 -1.4001 -1.4671 37 1 6.0058 -2.4835 -2.8526 38 1 6.6536 -3.4302 0.0426 39 1 6.4547 -4.4167 -1.4255 40 1 4.3311 -5.0092 0.3399 41 1 4.8578 -6.6236 2.4326 42 1 4.6575 -7.6102 0.9648 43 1 7.7622 -8.0411 4.9956 44 1 8.5729 -8.9231 3.6694 45 1 6.7092 -10.6491 5.7188 46 1 4.7339 -12.0279 5.2040 47 1 3.4301 -11.5978 3.1604 48 1 4.1012 -9.7903 1.6275 49 1 3.6840 -2.9768 0.7084 50 1 5.0117 -1.7876 0.6948 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594422072.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:10 Heat of formation + Delta-G solvation = -31.046565 kcal Electronic energy + Delta-G solvation = -29636.553057 eV Core-core repulsion = 25629.097387 eV Total energy + Delta-G solvation = -4007.455671 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.14975 -39.55947 -38.09806 -37.52774 -34.90841 -33.13864 -32.86315 -31.59542 -31.06852 -30.80578 -30.13751 -26.87381 -25.62576 -25.22547 -24.30329 -22.09801 -21.92159 -21.65061 -21.12816 -20.19343 -19.30955 -17.56946 -16.95526 -16.74586 -16.46054 -16.19342 -15.87043 -15.53681 -15.39373 -15.19039 -14.78794 -14.21329 -14.04337 -13.90094 -13.75896 -13.43323 -13.29093 -13.20313 -13.09605 -12.76485 -12.59450 -12.44433 -12.32137 -12.16084 -11.87888 -11.65018 -11.56128 -11.48283 -11.23423 -10.81199 -10.59223 -10.52134 -10.25006 -10.15437 -9.96416 -9.73202 -9.65861 -9.44613 -9.27099 -8.93614 -8.90061 -8.62406 -6.99233 -5.97234 -3.32885 0.85367 0.95123 2.73007 3.19849 3.31257 3.34672 3.47952 3.51322 3.61829 3.85645 4.28299 4.50286 4.51763 4.62521 4.70296 4.79615 4.87494 4.98083 5.05374 5.09854 5.14745 5.16683 5.18834 5.24218 5.29578 5.41036 5.44124 5.49206 5.61910 5.63277 5.65172 5.79641 5.84682 5.97902 6.02414 6.04077 6.07729 6.10901 6.14092 6.30210 6.37979 6.47876 6.49877 6.57203 6.58004 6.58798 6.69839 6.71818 6.96581 7.59896 7.93559 8.29716 8.31691 8.91619 9.70096 10.08368 11.18666 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015885 B = 0.002142 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.206041 B =13069.090957 C =13972.083645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.023 3.977 3 Si 0.884 3.116 4 H -0.289 1.289 5 H -0.304 1.304 6 H -0.271 1.271 7 C -0.260 4.260 8 H 0.085 0.915 9 N -0.606 5.606 10 C 0.124 3.876 11 C -0.134 4.134 12 C -0.101 4.101 13 C -0.119 4.119 14 H 0.077 0.923 15 C 0.128 3.872 16 N -0.726 5.726 17 C 0.514 3.486 18 O -0.536 6.536 19 C -0.140 4.140 20 C 0.140 3.860 21 H 0.093 0.907 22 O -0.339 6.339 23 C 0.087 3.913 24 C -0.129 4.129 25 C -0.096 4.096 26 C -0.116 4.116 27 C -0.116 4.116 28 C -0.091 4.091 29 C -0.126 4.126 30 C 0.156 3.844 31 H 0.262 0.738 32 H 0.024 0.976 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.403 0.597 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.097 0.903 44 H 0.077 0.923 45 H 0.125 0.875 46 H 0.127 0.873 47 H 0.129 0.871 48 H 0.127 0.873 49 H 0.060 0.940 50 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.085 -21.787 4.826 25.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.176 4.176 3 Si 0.714 3.286 4 H -0.216 1.216 5 H -0.232 1.232 6 H -0.196 1.196 7 C -0.388 4.388 8 H 0.102 0.898 9 N -0.329 5.329 10 C -0.002 4.002 11 C -0.173 4.173 12 C -0.139 4.139 13 C -0.139 4.139 14 H 0.096 0.904 15 C 0.004 3.996 16 N -0.379 5.379 17 C 0.299 3.701 18 O -0.413 6.413 19 C -0.180 4.180 20 C 0.082 3.918 21 H 0.110 0.890 22 O -0.258 6.258 23 C 0.010 3.990 24 C -0.129 4.129 25 C -0.114 4.114 26 C -0.133 4.133 27 C -0.134 4.134 28 C -0.109 4.109 29 C -0.126 4.126 30 C 0.030 3.970 31 H 0.072 0.928 32 H 0.042 0.958 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.238 0.762 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.115 0.885 44 H 0.095 0.905 45 H 0.143 0.857 46 H 0.145 0.855 47 H 0.146 0.854 48 H 0.145 0.855 49 H 0.078 0.922 50 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 12.850 -21.443 4.741 25.444 hybrid contribution -0.227 0.796 0.093 0.832 sum 12.623 -20.648 4.834 24.679 Atomic orbital electron populations 1.69836 1.05724 1.26574 1.53017 1.25270 0.95222 0.97622 0.99459 0.86942 0.80034 0.84618 0.76990 1.21633 1.23200 1.19590 1.18890 0.84937 0.94727 1.40286 0.89761 1.44338 1.08589 1.33323 1.46671 1.21347 0.97240 0.92036 0.89547 1.21992 0.98050 0.98563 0.98702 1.21348 0.97740 0.96793 0.98033 1.21942 0.97011 0.95904 0.99084 0.90416 1.21410 0.95554 0.87969 0.94635 1.46075 1.11386 1.27049 1.53351 1.20393 0.87495 0.82639 0.79527 1.90713 1.14343 1.76013 1.60255 1.21832 0.98653 0.96390 1.01138 1.21021 0.90415 0.88727 0.91629 0.88971 1.89253 1.67532 1.29994 1.38992 1.21783 0.94697 0.87127 0.95355 1.21121 0.97760 0.98017 0.95988 1.20414 0.97241 0.94779 0.98948 1.21162 0.95261 0.99492 0.97434 1.21168 0.99975 0.97621 0.94616 1.20468 0.95406 0.95022 0.99999 1.21051 0.96672 0.98378 0.96523 1.20931 0.92388 0.91206 0.92483 0.92771 0.95802 0.91044 0.92710 0.91731 0.92337 0.92789 0.91622 0.91936 0.76168 0.87676 0.87484 0.88531 0.90503 0.85709 0.85472 0.85353 0.85496 0.92184 0.95840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.57 13.97 55.49 0.78 -26.79 16 2 C 0.02 0.66 5.23 -17.43 -0.09 0.57 16 3 Si 0.88 22.39 24.35 -169.99 -4.14 18.25 16 4 H -0.29 -7.05 6.62 56.52 0.37 -6.68 16 5 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 6 H -0.27 -6.79 6.63 56.52 0.37 -6.41 16 7 C -0.26 -7.11 10.03 -15.06 -0.15 -7.26 16 8 H 0.08 2.43 8.06 -52.48 -0.42 2.00 16 9 N -0.61 -14.03 2.77 -172.32 -0.48 -14.51 16 10 C 0.12 2.67 4.20 -3.71 -0.02 2.65 16 11 C -0.13 -2.30 6.08 -26.61 -0.16 -2.47 16 12 C -0.10 -1.51 5.17 -26.69 -0.14 -1.65 16 13 C -0.12 -1.81 2.37 -90.49 -0.21 -2.03 16 14 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 15 C 0.13 1.77 5.07 -4.04 -0.02 1.75 16 16 N -0.73 -9.21 5.33 -60.29 -0.32 -9.53 16 17 C 0.51 6.90 7.75 -10.99 -0.09 6.82 16 18 O -0.54 -9.19 15.56 -3.50 -0.05 -9.25 16 19 C -0.14 -1.42 5.36 -27.88 -0.15 -1.57 16 20 C 0.14 1.55 2.84 -27.70 -0.08 1.47 16 21 H 0.09 1.06 7.92 -51.93 -0.41 0.65 16 22 O -0.34 -4.42 10.89 -44.28 -0.48 -4.90 16 23 C 0.09 0.83 7.63 36.20 0.28 1.10 16 24 C -0.13 -1.20 6.32 -104.40 -0.66 -1.86 16 25 C -0.10 -0.73 10.04 -39.66 -0.40 -1.13 16 26 C -0.12 -0.79 10.05 -39.55 -0.40 -1.19 16 27 C -0.12 -0.82 10.05 -39.55 -0.40 -1.21 16 28 C -0.09 -0.73 9.78 -39.66 -0.39 -1.12 16 29 C -0.13 -1.21 5.73 -104.40 -0.60 -1.81 16 30 C 0.16 2.93 5.60 -3.71 -0.02 2.91 16 31 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 32 H 0.02 0.52 7.08 -51.93 -0.37 0.15 16 33 H 0.07 1.69 4.50 -51.93 -0.23 1.46 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.40 4.53 7.71 -40.82 -0.31 4.21 16 41 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.11 0.78 7.82 -51.93 -0.41 0.38 16 43 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 46 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 47 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 48 H 0.13 0.78 7.87 -52.48 -0.41 0.36 16 49 H 0.06 1.09 7.14 -51.93 -0.37 0.72 16 50 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 392.67 15.07 5.92 5.92 Total: -1.00 -34.21 392.67 -10.52 -44.73 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -8.05 Total: 2.11 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -3.69 Total: -6.02 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.02 Total: -50.84 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.54 Total: -14.15 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.14 Total: 18.25 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.21 -10.52 -44.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594422072.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.682 kcal (2) G-P(sol) polarization free energy of solvation -34.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds