Wall clock time and date at job start Wed Apr 1 2020 02:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86807 * 119.99922 * 2 1 4 4 H 1.48501 * 109.46776 * 272.94784 * 3 2 1 5 5 H 1.48497 * 109.46997 * 32.94659 * 3 2 1 6 6 H 1.48493 * 109.46817 * 152.94855 * 3 2 1 7 7 C 1.38809 * 120.00206 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99952 * 339.34707 * 7 2 1 9 9 N 1.36930 * 120.00330 * 159.34702 * 7 2 1 10 10 C 1.46932 * 120.62761 * 332.63041 * 9 7 2 11 11 C 1.53189 * 108.77344 * 233.60768 * 10 9 7 12 12 C 1.53043 * 109.31615 * 305.36222 * 11 10 9 13 13 C 1.53042 * 109.53223 * 61.36656 * 12 11 10 14 14 H 1.08997 * 109.50305 * 58.62442 * 13 12 11 15 15 C 1.53007 * 109.49729 * 178.68740 * 13 12 11 16 16 N 1.46499 * 109.47236 * 184.99983 * 15 13 12 17 17 C 1.34775 * 119.99907 * 179.97438 * 16 15 13 18 18 O 1.21288 * 119.99960 * 0.02562 * 17 16 15 19 19 C 1.50702 * 120.00082 * 179.97438 * 17 16 15 20 20 C 1.52998 * 109.47186 * 179.97438 * 19 17 16 21 21 H 1.09003 * 110.13615 * 306.70250 * 20 19 17 22 22 O 1.43948 * 110.15329 * 68.47078 * 20 19 17 23 23 C 1.43945 * 104.94740 * 147.56273 * 22 20 19 24 24 C 1.51089 * 105.95674 * 331.55818 * 23 22 20 25 25 C 1.37963 * 132.68304 * 197.69080 * 24 23 22 26 26 C 1.38293 * 119.91566 * 180.02562 * 25 24 23 27 27 C 1.38261 * 120.04564 * 359.97438 * 26 25 24 28 28 C 1.38299 * 120.03556 * 0.04298 * 27 26 25 29 29 C 1.37961 * 119.92217 * 359.95950 * 28 27 26 30 30 C 1.46928 * 120.63389 * 152.62825 * 9 7 2 31 31 H 0.96995 * 119.99711 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.58765 * 113.81765 * 10 9 7 33 33 H 1.08997 * 109.70558 * 353.46423 * 10 9 7 34 34 H 1.08996 * 109.49764 * 185.41478 * 11 10 9 35 35 H 1.09005 * 109.52792 * 65.33189 * 11 10 9 36 36 H 1.08997 * 109.45912 * 301.35151 * 12 11 10 37 37 H 1.09000 * 109.46540 * 181.38366 * 12 11 10 38 38 H 1.09000 * 109.47367 * 64.99703 * 15 13 12 39 39 H 1.09003 * 109.46920 * 305.00206 * 15 13 12 40 40 H 0.97003 * 120.00275 * 359.97438 * 16 15 13 41 41 H 1.08995 * 109.46786 * 300.00249 * 19 17 16 42 42 H 1.09000 * 109.46965 * 59.99957 * 19 17 16 43 43 H 1.08990 * 110.15587 * 212.43128 * 23 22 20 44 44 H 1.09005 * 110.21075 * 90.70669 * 23 22 20 45 45 H 1.08004 * 120.04188 * 0.02562 * 25 24 23 46 46 H 1.08005 * 119.97910 * 179.97438 * 26 25 24 47 47 H 1.07990 * 119.98201 * 180.02562 * 27 26 25 48 48 H 1.08004 * 120.03268 * 179.97438 * 28 27 26 49 49 H 1.08996 * 109.58492 * 6.60826 * 30 9 7 50 50 H 1.08995 * 109.58546 * 246.17736 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4354 2.0824 -1.3983 5 1 1.4803 2.6339 0.7614 6 1 3.5775 1.4230 0.6367 7 6 2.0104 -1.2021 0.0005 8 1 1.5224 -2.1072 0.3308 9 7 3.3137 -1.2404 -0.4177 10 6 3.8174 -0.2594 -1.3887 11 6 4.4618 -1.0098 -2.5585 12 6 5.5285 -1.9662 -2.0203 13 6 4.8747 -2.9910 -1.0905 14 1 4.1084 -3.5410 -1.6367 15 6 5.9365 -3.9666 -0.5787 16 7 5.2929 -5.0169 0.2143 17 6 6.0372 -5.9938 0.7694 18 8 7.2399 -6.0032 0.6127 19 6 5.3752 -7.0739 1.5856 20 6 6.4368 -8.0503 2.0962 21 1 7.0395 -8.4174 1.2655 22 8 7.2756 -7.4051 3.0721 23 6 7.6458 -8.4489 3.9916 24 6 6.5130 -9.4483 3.9635 25 6 6.1376 -10.4609 4.8220 26 6 5.0284 -11.2346 4.5328 27 6 4.2963 -10.9933 3.3850 28 6 4.6729 -9.9784 2.5243 29 6 5.7794 -9.2066 2.8127 30 6 4.2350 -2.2632 0.0960 31 1 -0.4849 0.8400 -0.0004 32 1 4.5600 0.3795 -0.9109 33 1 2.9924 0.3509 -1.7562 34 1 4.9243 -0.2947 -3.2388 35 1 3.6992 -1.5780 -3.0912 36 1 6.2779 -1.4001 -1.4671 37 1 6.0058 -2.4835 -2.8526 38 1 6.6536 -3.4302 0.0426 39 1 6.4547 -4.4167 -1.4255 40 1 4.3311 -5.0092 0.3399 41 1 4.8578 -6.6236 2.4326 42 1 4.6575 -7.6102 0.9648 43 1 7.7622 -8.0411 4.9956 44 1 8.5729 -8.9231 3.6694 45 1 6.7092 -10.6491 5.7188 46 1 4.7339 -12.0279 5.2040 47 1 3.4301 -11.5978 3.1604 48 1 4.1012 -9.7903 1.6275 49 1 3.6840 -2.9768 0.7084 50 1 5.0117 -1.7876 0.6948 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594422072.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:09 Heat of formation + Delta-G solvation = -52.855312 kcal Electronic energy + Delta-G solvation = -29637.498756 eV Core-core repulsion = 25629.097387 eV Total energy + Delta-G solvation = -4008.401369 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.87719 -40.64882 -39.51024 -38.25614 -36.29724 -34.70055 -33.77768 -32.81188 -32.24891 -32.16377 -30.96251 -27.86719 -27.19370 -26.48296 -25.08235 -23.68357 -23.03294 -22.52256 -22.04418 -21.29652 -20.65033 -18.77857 -18.37771 -17.66102 -17.37556 -17.25029 -17.07416 -16.65873 -16.51544 -16.15237 -15.86668 -15.56816 -15.24209 -15.06514 -14.89328 -14.76279 -14.58842 -14.23421 -14.02417 -13.92703 -13.74213 -13.69113 -13.31727 -13.26712 -13.18691 -13.06787 -12.69740 -12.55842 -12.21958 -12.16226 -12.10130 -11.81140 -11.69752 -11.59462 -11.34696 -11.26099 -11.04167 -10.84342 -10.65668 -10.03427 -9.84305 -9.54952 -8.92473 -8.16552 -5.47277 0.26129 0.39005 1.28713 1.40630 1.49007 1.68141 2.23236 2.41325 2.73667 2.86741 3.05646 3.20593 3.31719 3.57141 3.78215 3.86762 3.91642 3.96924 4.03362 4.07503 4.21916 4.23278 4.26972 4.40132 4.41302 4.42829 4.51524 4.54401 4.62600 4.64917 4.76983 4.79431 4.82405 4.83573 4.85540 4.89435 4.99256 5.08342 5.09095 5.16615 5.26346 5.29441 5.39937 5.44095 5.48959 5.54460 5.58860 5.78779 5.87018 6.00236 6.13071 6.57079 6.92104 7.27606 7.62981 8.04311 9.03097 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015885 B = 0.002142 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.206041 B =13069.090957 C =13972.083645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.035 4.035 3 Si 0.943 3.057 4 H -0.275 1.275 5 H -0.313 1.313 6 H -0.266 1.266 7 C -0.244 4.244 8 H 0.058 0.942 9 N -0.620 5.620 10 C 0.115 3.885 11 C -0.126 4.126 12 C -0.099 4.099 13 C -0.102 4.102 14 H 0.076 0.924 15 C 0.137 3.863 16 N -0.722 5.722 17 C 0.512 3.488 18 O -0.576 6.576 19 C -0.133 4.133 20 C 0.139 3.861 21 H 0.079 0.921 22 O -0.373 6.373 23 C 0.082 3.918 24 C -0.146 4.146 25 C -0.102 4.102 26 C -0.117 4.117 27 C -0.120 4.120 28 C -0.098 4.098 29 C -0.142 4.142 30 C 0.152 3.848 31 H 0.261 0.739 32 H 0.028 0.972 33 H 0.047 0.953 34 H 0.081 0.919 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.056 0.944 39 H 0.072 0.928 40 H 0.411 0.589 41 H 0.109 0.891 42 H 0.138 0.862 43 H 0.107 0.893 44 H 0.083 0.917 45 H 0.144 0.856 46 H 0.153 0.847 47 H 0.152 0.848 48 H 0.144 0.856 49 H 0.059 0.941 50 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.154 -23.220 4.477 27.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.230 4.230 3 Si 0.772 3.228 4 H -0.202 1.202 5 H -0.242 1.242 6 H -0.191 1.191 7 C -0.374 4.374 8 H 0.076 0.924 9 N -0.344 5.344 10 C -0.010 4.010 11 C -0.165 4.165 12 C -0.137 4.137 13 C -0.123 4.123 14 H 0.094 0.906 15 C 0.013 3.987 16 N -0.374 5.374 17 C 0.300 3.700 18 O -0.456 6.456 19 C -0.172 4.172 20 C 0.081 3.919 21 H 0.096 0.904 22 O -0.292 6.292 23 C 0.006 3.994 24 C -0.146 4.146 25 C -0.120 4.120 26 C -0.135 4.135 27 C -0.137 4.137 28 C -0.116 4.116 29 C -0.143 4.143 30 C 0.027 3.973 31 H 0.070 0.930 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.102 0.898 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.248 0.752 41 H 0.127 0.873 42 H 0.156 0.844 43 H 0.125 0.875 44 H 0.101 0.899 45 H 0.162 0.838 46 H 0.171 0.829 47 H 0.170 0.830 48 H 0.162 0.838 49 H 0.077 0.923 50 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 13.950 -22.891 4.381 27.163 hybrid contribution -0.546 1.123 0.242 1.272 sum 13.404 -21.769 4.623 25.979 Atomic orbital electron populations 1.69953 1.07240 1.27078 1.55938 1.25856 0.95794 1.00720 1.00593 0.85972 0.78598 0.80736 0.77447 1.20170 1.24208 1.19087 1.18892 0.86624 0.93618 1.38230 0.92381 1.44490 1.07820 1.34558 1.47537 1.21432 0.96630 0.92139 0.90770 1.21900 0.98369 0.99089 0.97161 1.21372 0.97088 0.96355 0.98906 1.21726 0.97116 0.95906 0.97518 0.90560 1.21249 0.94783 0.87808 0.94849 1.46062 1.11786 1.26634 1.52945 1.20918 0.87038 0.82953 0.79097 1.90694 1.16131 1.76985 1.61786 1.21869 0.98742 0.95513 1.01121 1.20992 0.90339 0.89405 0.91153 0.90376 1.89199 1.68194 1.31828 1.39978 1.21921 0.95264 0.86917 0.95314 1.21227 0.97888 0.98779 0.96684 1.20715 0.97730 0.94261 0.99303 1.21546 0.94592 0.99620 0.97703 1.21533 1.00574 0.97328 0.94311 1.20749 0.94998 0.94963 1.00888 1.21017 0.97790 0.98623 0.96826 1.21096 0.91693 0.90426 0.94065 0.93039 0.95418 0.93510 0.90036 0.92482 0.91777 0.89755 0.92561 0.90990 0.75242 0.87258 0.84400 0.87515 0.89947 0.83847 0.82945 0.82994 0.83840 0.92270 0.95825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.54 13.97 21.65 0.30 -59.24 16 2 C -0.03 -2.02 5.23 84.86 0.44 -1.58 16 3 Si 0.94 46.78 24.35 68.60 1.67 48.45 16 4 H -0.27 -12.88 6.62 99.48 0.66 -12.22 16 5 H -0.31 -15.86 7.11 99.48 0.71 -15.15 16 6 H -0.27 -12.80 6.63 99.48 0.66 -12.14 16 7 C -0.24 -13.51 10.03 84.03 0.84 -12.66 16 8 H 0.06 3.45 8.06 -2.91 -0.02 3.43 16 9 N -0.62 -28.29 2.77 -699.10 -1.94 -30.23 16 10 C 0.11 4.77 4.20 86.36 0.36 5.13 16 11 C -0.13 -3.99 6.08 30.67 0.19 -3.80 16 12 C -0.10 -2.64 5.17 30.62 0.16 -2.48 16 13 C -0.10 -2.90 2.37 -10.71 -0.03 -2.93 16 14 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 15 C 0.14 3.53 5.07 86.38 0.44 3.97 16 16 N -0.72 -17.36 5.33 -463.04 -2.47 -19.83 16 17 C 0.51 13.43 7.75 87.66 0.68 14.11 16 18 O -0.58 -19.76 15.56 5.60 0.09 -19.67 16 19 C -0.13 -2.59 5.36 29.85 0.16 -2.43 16 20 C 0.14 3.07 2.84 29.97 0.09 3.16 16 21 H 0.08 1.87 7.92 -2.39 -0.02 1.85 16 22 O -0.37 -9.95 10.89 -140.33 -1.53 -11.48 16 23 C 0.08 1.58 7.63 71.36 0.54 2.12 16 24 C -0.15 -2.62 6.32 -19.72 -0.12 -2.74 16 25 C -0.10 -1.39 10.04 22.22 0.22 -1.17 16 26 C -0.12 -1.31 10.05 22.29 0.22 -1.09 16 27 C -0.12 -1.39 10.05 22.29 0.22 -1.16 16 28 C -0.10 -1.40 9.78 22.22 0.22 -1.18 16 29 C -0.14 -2.63 5.73 -19.72 -0.11 -2.75 16 30 C 0.15 5.54 5.60 86.36 0.48 6.03 16 31 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 32 H 0.03 1.13 7.08 -2.39 -0.02 1.12 16 33 H 0.05 2.17 4.50 -2.39 -0.01 2.16 16 34 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 36 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.41 8.65 7.71 -92.71 -0.71 7.93 16 41 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.14 1.75 7.82 -2.39 -0.02 1.73 16 43 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 45 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 46 H 0.15 0.88 8.06 -2.91 -0.02 0.85 16 47 H 0.15 0.98 8.06 -2.92 -0.02 0.95 16 48 H 0.14 1.43 7.87 -2.91 -0.02 1.41 16 49 H 0.06 2.13 7.14 -2.39 -0.02 2.11 16 50 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -75.72 392.67 1.26 -74.45 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 0.13 Total: 19.00 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: 5.01 Total: -1.45 kcal Atomic # 7 Polarization: -105.20 SS G_CDS: -4.10 Total: -109.30 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -1.44 Total: -31.15 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 1.67 Total: 48.45 kcal Total: -75.72 1.26 -74.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594422072.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.595 kcal (2) G-P(sol) polarization free energy of solvation -75.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds