Wall clock time and date at job start Wed Apr 1 2020 02:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99647 * 2 1 4 4 H 1.48494 * 109.47211 * 239.99799 * 3 2 1 5 5 H 1.48503 * 109.47063 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47138 * 119.99457 * 3 2 1 7 7 C 1.38807 * 120.00672 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00669 * 163.08565 * 7 2 1 9 9 N 1.36938 * 119.99498 * 343.08558 * 7 2 1 10 10 C 1.46924 * 120.63261 * 331.82397 * 9 7 2 11 11 C 1.53194 * 108.77288 * 233.60641 * 10 9 7 12 12 C 1.53039 * 109.31699 * 305.36605 * 11 10 9 13 13 C 1.53039 * 109.53483 * 61.36357 * 12 11 10 14 14 H 1.08996 * 109.50181 * 58.62470 * 13 12 11 15 15 C 1.53009 * 109.49452 * 178.68644 * 13 12 11 16 16 N 1.46503 * 109.46977 * 184.93891 * 15 13 12 17 17 C 1.34776 * 119.99637 * 180.02562 * 16 15 13 18 18 O 1.21274 * 120.00489 * 359.97438 * 17 16 15 19 19 C 1.50704 * 119.99849 * 179.97438 * 17 16 15 20 20 C 1.52992 * 109.47309 * 179.97438 * 19 17 16 21 21 H 1.08997 * 110.13115 * 55.24374 * 20 19 17 22 22 O 1.43945 * 110.15329 * 293.54510 * 20 19 17 23 23 C 1.43941 * 104.95071 * 212.43328 * 22 20 19 24 24 C 1.51087 * 105.95680 * 28.44574 * 23 22 20 25 25 C 1.37963 * 132.68986 * 162.30719 * 24 23 22 26 26 C 1.38287 * 119.91992 * 179.97438 * 25 24 23 27 27 C 1.38265 * 120.04421 * 359.97438 * 26 25 24 28 28 C 1.38293 * 120.03707 * 0.03303 * 27 26 25 29 29 C 1.37970 * 119.91996 * 359.94172 * 28 27 26 30 30 C 1.46938 * 120.60376 * 151.84509 * 9 7 2 31 31 H 0.96999 * 120.00288 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.58609 * 113.82506 * 10 9 7 33 33 H 1.08999 * 109.58879 * 353.39457 * 10 9 7 34 34 H 1.09000 * 109.50002 * 185.41252 * 11 10 9 35 35 H 1.09001 * 109.52322 * 65.33769 * 11 10 9 36 36 H 1.09006 * 109.46148 * 301.34527 * 12 11 10 37 37 H 1.08998 * 109.44893 * 181.37807 * 12 11 10 38 38 H 1.08997 * 109.47281 * 64.93273 * 15 13 12 39 39 H 1.09006 * 109.47003 * 304.93242 * 15 13 12 40 40 H 0.96992 * 120.00219 * 359.97438 * 16 15 13 41 41 H 1.09003 * 109.47046 * 300.00228 * 19 17 16 42 42 H 1.09006 * 109.46751 * 59.99367 * 19 17 16 43 43 H 1.09010 * 110.15378 * 147.56654 * 23 22 20 44 44 H 1.08996 * 110.15830 * 269.25111 * 23 22 20 45 45 H 1.08004 * 120.03742 * 359.97390 * 25 24 23 46 46 H 1.08006 * 119.97726 * 179.97438 * 26 25 24 47 47 H 1.07991 * 119.98210 * 180.02562 * 27 26 25 48 48 H 1.08003 * 120.04170 * 179.97438 * 28 27 26 49 49 H 1.08999 * 109.61388 * 6.62019 * 30 9 7 50 50 H 1.09005 * 109.56287 * 246.19795 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2850 2.7465 0.0006 6 1 3.1037 1.6966 1.2126 7 6 2.0104 -1.2020 0.0005 8 1 3.0553 -1.2224 -0.2716 9 7 1.3701 -2.3622 0.3461 10 6 0.2263 -2.3400 1.2679 11 6 0.4980 -3.3190 2.4145 12 6 0.8128 -4.7006 1.8365 13 6 2.0680 -4.6170 0.9650 14 1 2.9031 -4.2536 1.5638 15 6 2.4006 -6.0051 0.4141 16 7 3.6659 -5.9480 -0.3222 17 6 4.1603 -7.0609 -0.8996 18 8 3.5581 -8.1097 -0.8094 19 6 5.4615 -7.0021 -1.6576 20 6 5.7942 -8.3901 -2.2083 21 1 4.9669 -8.7621 -2.8126 22 8 6.0672 -9.3003 -1.1271 23 6 7.0501 -10.2131 -1.6493 24 6 7.8213 -9.4402 -2.6936 25 6 9.0439 -9.6483 -3.2981 26 6 9.5074 -8.7517 -4.2434 27 6 8.7464 -7.6483 -4.5828 28 6 7.5210 -7.4397 -3.9768 29 6 7.0582 -8.3345 -3.0341 30 6 1.8148 -3.6526 -0.1979 31 1 -0.4850 0.8400 -0.0004 32 1 -0.6768 -2.6408 0.7369 33 1 0.0993 -1.3343 1.6686 34 1 -0.3824 -3.3841 3.0538 35 1 1.3475 -2.9674 3.0000 36 1 -0.0275 -5.0411 1.2313 37 1 0.9825 -5.4047 2.6511 38 1 1.6047 -6.3305 -0.2557 39 1 2.4922 -6.7112 1.2395 40 1 4.1473 -5.1091 -0.3947 41 1 5.3698 -6.2957 -2.4827 42 1 6.2577 -6.6768 -0.9878 43 1 7.7195 -10.5399 -0.8534 44 1 6.5594 -11.0738 -2.1038 45 1 9.6381 -10.5104 -3.0333 46 1 10.4646 -8.9135 -4.7169 47 1 9.1093 -6.9491 -5.3214 48 1 6.9267 -6.5776 -4.2416 49 1 2.7358 -3.5132 -0.7641 50 1 1.0415 -4.0602 -0.8490 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594422073.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:14 Heat of formation + Delta-G solvation = -36.942159 kcal Electronic energy + Delta-G solvation = -29555.829822 eV Core-core repulsion = 25548.118499 eV Total energy + Delta-G solvation = -4007.711323 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.14427 -39.49264 -37.86204 -37.47297 -34.75260 -33.11053 -32.83460 -31.59268 -30.79367 -30.44276 -29.92688 -26.75350 -25.39361 -25.19280 -24.20780 -22.15157 -21.92375 -21.46888 -20.84206 -20.14320 -19.02787 -17.54325 -16.92235 -16.74682 -16.40680 -16.15022 -15.86257 -15.38931 -15.25847 -14.83805 -14.68689 -14.17145 -14.05102 -13.83665 -13.57310 -13.41410 -13.27051 -13.08956 -12.79472 -12.62138 -12.46376 -12.30421 -12.20557 -12.16622 -11.83616 -11.56020 -11.28673 -11.22241 -11.01703 -10.71078 -10.50520 -10.24990 -10.24517 -10.17767 -9.95515 -9.80196 -9.52945 -9.42548 -9.26814 -8.91681 -8.84668 -8.47797 -6.68429 -5.80573 -3.23788 0.85341 0.95204 2.77951 3.23001 3.35775 3.36557 3.42250 3.42802 3.62814 3.86000 4.28703 4.46392 4.51123 4.62721 4.72237 4.87022 4.97580 5.05869 5.08320 5.14469 5.16982 5.19223 5.31086 5.43782 5.45539 5.48839 5.49536 5.62120 5.62924 5.65523 5.85085 5.98013 5.98534 6.01160 6.04654 6.08052 6.25249 6.34528 6.38994 6.47990 6.56698 6.58254 6.59504 6.71258 6.78494 6.86565 6.97022 7.39420 7.65010 7.66899 7.76413 8.36996 8.43057 9.19163 9.82741 10.39854 11.27660 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013819 B = 0.002190 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.758214 B =12782.865178 C =14497.881544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.902 3.098 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.255 4.255 8 H 0.064 0.936 9 N -0.592 5.592 10 C 0.169 3.831 11 C -0.142 4.142 12 C -0.100 4.100 13 C -0.117 4.117 14 H 0.072 0.928 15 C 0.128 3.872 16 N -0.726 5.726 17 C 0.513 3.487 18 O -0.536 6.536 19 C -0.140 4.140 20 C 0.140 3.860 21 H 0.093 0.907 22 O -0.339 6.339 23 C 0.087 3.913 24 C -0.129 4.129 25 C -0.096 4.096 26 C -0.116 4.116 27 C -0.116 4.116 28 C -0.091 4.091 29 C -0.125 4.125 30 C 0.154 3.846 31 H 0.254 0.746 32 H 0.017 0.983 33 H 0.086 0.914 34 H 0.049 0.951 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.047 0.953 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.402 0.598 41 H 0.108 0.892 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.077 0.923 45 H 0.125 0.875 46 H 0.127 0.873 47 H 0.129 0.871 48 H 0.128 0.872 49 H 0.050 0.950 50 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.361 -17.796 -5.624 24.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.384 4.384 8 H 0.082 0.918 9 N -0.314 5.314 10 C 0.044 3.956 11 C -0.181 4.181 12 C -0.138 4.138 13 C -0.138 4.138 14 H 0.091 0.909 15 C 0.004 3.996 16 N -0.378 5.378 17 C 0.299 3.701 18 O -0.412 6.412 19 C -0.180 4.180 20 C 0.082 3.918 21 H 0.111 0.889 22 O -0.258 6.258 23 C 0.010 3.990 24 C -0.129 4.129 25 C -0.114 4.114 26 C -0.134 4.134 27 C -0.134 4.134 28 C -0.109 4.109 29 C -0.126 4.126 30 C 0.028 3.972 31 H 0.064 0.936 32 H 0.035 0.965 33 H 0.104 0.896 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.237 0.763 41 H 0.126 0.874 42 H 0.120 0.880 43 H 0.114 0.886 44 H 0.095 0.905 45 H 0.143 0.857 46 H 0.145 0.855 47 H 0.147 0.853 48 H 0.146 0.854 49 H 0.068 0.932 50 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 15.681 -18.381 -5.344 24.746 hybrid contribution 0.794 1.336 -0.268 1.577 sum 16.475 -17.046 -5.612 24.362 Atomic orbital electron populations 1.70024 1.05273 1.25633 1.53639 1.25049 0.95279 0.98415 1.00854 0.86378 0.78919 0.83406 0.78090 1.20900 1.21637 1.21044 1.19108 0.92437 0.84854 1.42017 0.91828 1.44035 1.35908 1.01331 1.50131 1.20794 0.88545 0.98268 0.88027 1.22174 1.00090 0.96009 0.99830 1.21342 0.96771 0.97703 0.97983 1.21948 0.98802 0.93688 0.99366 0.90926 1.21438 0.84866 0.97850 0.95419 1.46078 1.24987 1.11713 1.54992 1.20371 0.86549 0.83777 0.79452 1.90711 1.60704 1.29589 1.60239 1.21833 0.96894 0.97394 1.01851 1.21022 0.93739 0.89915 0.87132 0.88934 1.89251 1.59056 1.43390 1.34061 1.21781 0.89828 0.92380 0.94976 1.21120 0.95593 0.96968 0.99259 1.20405 0.94462 0.99821 0.96737 1.21160 1.00005 0.94686 0.97537 1.21174 0.94452 0.97896 0.99849 1.20492 0.96181 0.98592 0.95607 1.21055 0.96668 0.96411 0.98438 1.20896 0.97418 0.86804 0.92115 0.93556 0.96451 0.89599 0.93200 0.92775 0.92492 0.93441 0.91692 0.92073 0.76310 0.87368 0.87964 0.88611 0.90493 0.85739 0.85489 0.85345 0.85408 0.93175 0.96383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.90 11.20 55.49 0.62 -25.28 16 2 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 3 Si 0.90 21.29 29.59 -169.99 -5.03 16.26 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.25 -6.80 9.58 -15.06 -0.14 -6.94 16 8 H 0.06 1.64 7.89 -52.49 -0.41 1.23 16 9 N -0.59 -14.43 2.99 -172.31 -0.52 -14.94 16 10 C 0.17 3.99 5.30 -3.71 -0.02 3.97 16 11 C -0.14 -2.67 6.08 -26.61 -0.16 -2.83 16 12 C -0.10 -1.66 5.17 -26.69 -0.14 -1.79 16 13 C -0.12 -1.93 2.37 -90.50 -0.21 -2.15 16 14 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 15 C 0.13 1.90 5.07 -4.04 -0.02 1.88 16 16 N -0.73 -9.69 5.33 -60.29 -0.32 -10.01 16 17 C 0.51 7.16 7.73 -10.98 -0.08 7.07 16 18 O -0.54 -9.49 15.52 -6.37 -0.10 -9.59 16 19 C -0.14 -1.45 5.35 -27.89 -0.15 -1.60 16 20 C 0.14 1.57 2.85 -27.70 -0.08 1.50 16 21 H 0.09 1.11 7.98 -51.93 -0.41 0.69 16 22 O -0.34 -4.40 10.77 -47.16 -0.51 -4.91 16 23 C 0.09 0.82 7.63 36.19 0.28 1.10 16 24 C -0.13 -1.20 6.32 -104.40 -0.66 -1.86 16 25 C -0.10 -0.73 10.04 -39.66 -0.40 -1.13 16 26 C -0.12 -0.80 10.05 -39.55 -0.40 -1.19 16 27 C -0.12 -0.83 10.05 -39.55 -0.40 -1.23 16 28 C -0.09 -0.75 9.82 -39.66 -0.39 -1.14 16 29 C -0.13 -1.22 5.73 -104.40 -0.60 -1.82 16 30 C 0.15 3.08 5.60 -3.71 -0.02 3.05 16 31 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 2.27 6.06 -51.93 -0.31 1.96 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.40 4.72 7.70 -40.82 -0.31 4.41 16 41 H 0.11 0.86 7.94 -51.93 -0.41 0.45 16 42 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.10 0.74 8.14 -51.92 -0.42 0.32 16 44 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.12 0.67 8.06 -52.48 -0.42 0.24 16 46 H 0.13 0.58 8.06 -52.48 -0.42 0.15 16 47 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 48 H 0.13 0.84 7.93 -52.48 -0.42 0.43 16 49 H 0.05 0.94 7.14 -51.93 -0.37 0.57 16 50 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 399.19 15.07 6.02 6.02 Total: -1.00 -32.95 399.19 -11.65 -44.60 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -8.13 Total: 2.96 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -3.68 Total: -5.12 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: -0.22 Total: -50.23 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.61 Total: -14.50 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.95 -11.65 -44.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594422073.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.661 kcal (2) G-P(sol) polarization free energy of solvation -32.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds