Wall clock time and date at job start Wed Apr 1 2020 02:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99647 * 2 1 4 4 H 1.48494 * 109.47211 * 239.99799 * 3 2 1 5 5 H 1.48503 * 109.47063 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47138 * 119.99457 * 3 2 1 7 7 C 1.38807 * 120.00672 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00669 * 163.08565 * 7 2 1 9 9 N 1.36938 * 119.99498 * 343.08558 * 7 2 1 10 10 C 1.46924 * 120.63261 * 331.82397 * 9 7 2 11 11 C 1.53194 * 108.77288 * 233.60641 * 10 9 7 12 12 C 1.53039 * 109.31699 * 305.36605 * 11 10 9 13 13 C 1.53039 * 109.53483 * 61.36357 * 12 11 10 14 14 H 1.08996 * 109.50181 * 58.62470 * 13 12 11 15 15 C 1.53009 * 109.49452 * 178.68644 * 13 12 11 16 16 N 1.46503 * 109.46977 * 184.93891 * 15 13 12 17 17 C 1.34776 * 119.99637 * 180.02562 * 16 15 13 18 18 O 1.21274 * 120.00489 * 359.97438 * 17 16 15 19 19 C 1.50704 * 119.99849 * 179.97438 * 17 16 15 20 20 C 1.52992 * 109.47309 * 179.97438 * 19 17 16 21 21 H 1.08997 * 110.13115 * 55.24374 * 20 19 17 22 22 O 1.43945 * 110.15329 * 293.54510 * 20 19 17 23 23 C 1.43941 * 104.95071 * 212.43328 * 22 20 19 24 24 C 1.51087 * 105.95680 * 28.44574 * 23 22 20 25 25 C 1.37963 * 132.68986 * 162.30719 * 24 23 22 26 26 C 1.38287 * 119.91992 * 179.97438 * 25 24 23 27 27 C 1.38265 * 120.04421 * 359.97438 * 26 25 24 28 28 C 1.38293 * 120.03707 * 0.03303 * 27 26 25 29 29 C 1.37970 * 119.91996 * 359.94172 * 28 27 26 30 30 C 1.46938 * 120.60376 * 151.84509 * 9 7 2 31 31 H 0.96999 * 120.00288 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.58609 * 113.82506 * 10 9 7 33 33 H 1.08999 * 109.58879 * 353.39457 * 10 9 7 34 34 H 1.09000 * 109.50002 * 185.41252 * 11 10 9 35 35 H 1.09001 * 109.52322 * 65.33769 * 11 10 9 36 36 H 1.09006 * 109.46148 * 301.34527 * 12 11 10 37 37 H 1.08998 * 109.44893 * 181.37807 * 12 11 10 38 38 H 1.08997 * 109.47281 * 64.93273 * 15 13 12 39 39 H 1.09006 * 109.47003 * 304.93242 * 15 13 12 40 40 H 0.96992 * 120.00219 * 359.97438 * 16 15 13 41 41 H 1.09003 * 109.47046 * 300.00228 * 19 17 16 42 42 H 1.09006 * 109.46751 * 59.99367 * 19 17 16 43 43 H 1.09010 * 110.15378 * 147.56654 * 23 22 20 44 44 H 1.08996 * 110.15830 * 269.25111 * 23 22 20 45 45 H 1.08004 * 120.03742 * 359.97390 * 25 24 23 46 46 H 1.08006 * 119.97726 * 179.97438 * 26 25 24 47 47 H 1.07991 * 119.98210 * 180.02562 * 27 26 25 48 48 H 1.08003 * 120.04170 * 179.97438 * 28 27 26 49 49 H 1.08999 * 109.61388 * 6.62019 * 30 9 7 50 50 H 1.09005 * 109.56287 * 246.19795 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2850 2.7465 0.0006 6 1 3.1037 1.6966 1.2126 7 6 2.0104 -1.2020 0.0005 8 1 3.0553 -1.2224 -0.2716 9 7 1.3701 -2.3622 0.3461 10 6 0.2263 -2.3400 1.2679 11 6 0.4980 -3.3190 2.4145 12 6 0.8128 -4.7006 1.8365 13 6 2.0680 -4.6170 0.9650 14 1 2.9031 -4.2536 1.5638 15 6 2.4006 -6.0051 0.4141 16 7 3.6659 -5.9480 -0.3222 17 6 4.1603 -7.0609 -0.8996 18 8 3.5581 -8.1097 -0.8094 19 6 5.4615 -7.0021 -1.6576 20 6 5.7942 -8.3901 -2.2083 21 1 4.9669 -8.7621 -2.8126 22 8 6.0672 -9.3003 -1.1271 23 6 7.0501 -10.2131 -1.6493 24 6 7.8213 -9.4402 -2.6936 25 6 9.0439 -9.6483 -3.2981 26 6 9.5074 -8.7517 -4.2434 27 6 8.7464 -7.6483 -4.5828 28 6 7.5210 -7.4397 -3.9768 29 6 7.0582 -8.3345 -3.0341 30 6 1.8148 -3.6526 -0.1979 31 1 -0.4850 0.8400 -0.0004 32 1 -0.6768 -2.6408 0.7369 33 1 0.0993 -1.3343 1.6686 34 1 -0.3824 -3.3841 3.0538 35 1 1.3475 -2.9674 3.0000 36 1 -0.0275 -5.0411 1.2313 37 1 0.9825 -5.4047 2.6511 38 1 1.6047 -6.3305 -0.2557 39 1 2.4922 -6.7112 1.2395 40 1 4.1473 -5.1091 -0.3947 41 1 5.3698 -6.2957 -2.4827 42 1 6.2577 -6.6768 -0.9878 43 1 7.7195 -10.5399 -0.8534 44 1 6.5594 -11.0738 -2.1038 45 1 9.6381 -10.5104 -3.0333 46 1 10.4646 -8.9135 -4.7169 47 1 9.1093 -6.9491 -5.3214 48 1 6.9267 -6.5776 -4.2416 49 1 2.7358 -3.5132 -0.7641 50 1 1.0415 -4.0602 -0.8490 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594422073.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:12 Heat of formation + Delta-G solvation = -56.032247 kcal Electronic energy + Delta-G solvation = -29556.657630 eV Core-core repulsion = 25548.118499 eV Total energy + Delta-G solvation = -4008.539131 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.87493 -40.61850 -39.31991 -38.24669 -36.21748 -34.65574 -33.75176 -32.29559 -32.23947 -32.01087 -30.89574 -27.69613 -27.21143 -26.35633 -25.03380 -23.81786 -22.72440 -22.47777 -22.01037 -21.26476 -20.51826 -18.71763 -18.33388 -17.65633 -17.34491 -17.09408 -16.80436 -16.60136 -16.39012 -16.19659 -15.78869 -15.56046 -15.17392 -14.99969 -14.77507 -14.58048 -14.49771 -14.03705 -13.98708 -13.78174 -13.73127 -13.61565 -13.25982 -13.07969 -13.00201 -12.83604 -12.69832 -12.46501 -12.29661 -12.20017 -11.97242 -11.81849 -11.80631 -11.57542 -11.33829 -11.10240 -11.03456 -10.82019 -10.51349 -10.02770 -9.84333 -9.54922 -8.66428 -7.85336 -5.31460 0.26170 0.39046 1.48162 1.51011 1.57259 1.69359 2.23346 2.52414 2.73678 2.87221 3.20725 3.29436 3.57044 3.61299 3.78867 3.93072 4.00365 4.02275 4.06458 4.09588 4.22171 4.24397 4.40665 4.42590 4.43248 4.52300 4.58822 4.61682 4.64273 4.76753 4.79921 4.81512 4.89364 4.89546 4.92553 5.01929 5.09253 5.10986 5.24466 5.33881 5.40030 5.40522 5.44333 5.51731 5.54656 5.58349 5.67817 5.78701 5.78934 6.00297 6.40316 6.59007 7.16194 7.29059 7.87617 8.40085 9.20901 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013819 B = 0.002190 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.758214 B =12782.865178 C =14497.881544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.053 4.053 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.298 1.298 6 H -0.278 1.278 7 C -0.261 4.261 8 H 0.072 0.928 9 N -0.610 5.610 10 C 0.173 3.827 11 C -0.130 4.130 12 C -0.098 4.098 13 C -0.099 4.099 14 H 0.076 0.924 15 C 0.139 3.861 16 N -0.720 5.720 17 C 0.511 3.489 18 O -0.577 6.577 19 C -0.131 4.131 20 C 0.138 3.862 21 H 0.075 0.925 22 O -0.371 6.371 23 C 0.082 3.918 24 C -0.144 4.144 25 C -0.101 4.101 26 C -0.116 4.116 27 C -0.120 4.120 28 C -0.099 4.099 29 C -0.142 4.142 30 C 0.153 3.847 31 H 0.249 0.751 32 H -0.008 1.008 33 H 0.051 0.949 34 H 0.068 0.932 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.078 0.922 38 H 0.054 0.946 39 H 0.066 0.934 40 H 0.412 0.588 41 H 0.135 0.865 42 H 0.115 0.885 43 H 0.109 0.891 44 H 0.081 0.919 45 H 0.145 0.855 46 H 0.153 0.847 47 H 0.151 0.849 48 H 0.141 0.859 49 H 0.060 0.940 50 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.204 -18.283 -5.933 27.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.249 4.249 3 Si 0.795 3.205 4 H -0.199 1.199 5 H -0.224 1.224 6 H -0.204 1.204 7 C -0.391 4.391 8 H 0.090 0.910 9 N -0.333 5.333 10 C 0.047 3.953 11 C -0.169 4.169 12 C -0.136 4.136 13 C -0.120 4.120 14 H 0.094 0.906 15 C 0.014 3.986 16 N -0.373 5.373 17 C 0.299 3.701 18 O -0.457 6.457 19 C -0.171 4.171 20 C 0.080 3.920 21 H 0.092 0.908 22 O -0.290 6.290 23 C 0.006 3.994 24 C -0.145 4.145 25 C -0.119 4.119 26 C -0.134 4.134 27 C -0.138 4.138 28 C -0.117 4.117 29 C -0.142 4.142 30 C 0.028 3.972 31 H 0.058 0.942 32 H 0.010 0.990 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.248 0.752 41 H 0.153 0.847 42 H 0.133 0.867 43 H 0.127 0.873 44 H 0.099 0.901 45 H 0.163 0.837 46 H 0.171 0.829 47 H 0.169 0.831 48 H 0.159 0.841 49 H 0.078 0.922 50 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges 18.561 -18.879 -5.656 27.073 hybrid contribution -0.075 1.428 -0.229 1.448 sum 18.486 -17.452 -5.886 26.094 Atomic orbital electron populations 1.70193 1.06796 1.25840 1.55485 1.25830 0.96002 1.01628 1.01404 0.85346 0.77525 0.79189 0.78417 1.19855 1.22438 1.20398 1.19512 0.92949 0.85861 1.40792 0.91040 1.44312 1.35856 1.02316 1.50791 1.20625 0.87728 0.97704 0.89207 1.22001 1.00921 0.95923 0.98057 1.21344 0.96644 0.96768 0.98862 1.21706 0.98955 0.93480 0.97826 0.90555 1.21218 0.85344 0.96584 0.95449 1.46030 1.24476 1.12188 1.54562 1.20962 0.87236 0.83004 0.78925 1.90693 1.62115 1.31103 1.61763 1.21862 0.94957 0.97806 1.02448 1.20972 0.94147 0.89867 0.86964 0.90781 1.89199 1.60115 1.44387 1.35261 1.21929 0.89673 0.92084 0.95739 1.21226 0.96451 0.97054 0.99723 1.20715 0.93946 1.00696 0.96550 1.21545 1.00889 0.94070 0.96887 1.21524 0.93946 0.98394 0.99894 1.20745 0.96902 0.98790 0.95253 1.20997 0.96214 0.97572 0.99437 1.21023 0.97189 0.85653 0.93379 0.94227 0.98981 0.93022 0.91324 0.92832 0.92729 0.90377 0.92713 0.91562 0.75166 0.84732 0.86696 0.87267 0.90111 0.83727 0.82896 0.83089 0.84077 0.92183 0.97704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.37 11.20 21.65 0.24 -55.13 16 2 C -0.05 -2.94 4.92 84.86 0.42 -2.53 16 3 Si 0.97 44.02 29.59 68.60 2.03 46.05 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 6 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.26 -13.93 9.58 84.03 0.81 -13.13 16 8 H 0.07 3.62 7.89 -2.91 -0.02 3.60 16 9 N -0.61 -29.87 2.99 -699.08 -2.09 -31.96 16 10 C 0.17 8.33 5.30 86.36 0.46 8.79 16 11 C -0.13 -4.77 6.08 30.67 0.19 -4.58 16 12 C -0.10 -3.07 5.17 30.62 0.16 -2.91 16 13 C -0.10 -3.10 2.37 -10.72 -0.03 -3.13 16 14 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 15 C 0.14 3.91 5.07 86.38 0.44 4.35 16 16 N -0.72 -18.18 5.33 -463.04 -2.47 -20.65 16 17 C 0.51 13.89 7.73 87.66 0.68 14.56 16 18 O -0.58 -20.57 15.52 8.39 0.13 -20.44 16 19 C -0.13 -2.58 5.35 29.85 0.16 -2.42 16 20 C 0.14 3.10 2.85 29.97 0.09 3.19 16 21 H 0.07 1.86 7.98 -2.39 -0.02 1.84 16 22 O -0.37 -9.72 10.77 -137.57 -1.48 -11.20 16 23 C 0.08 1.53 7.63 71.36 0.54 2.07 16 24 C -0.14 -2.54 6.32 -19.72 -0.12 -2.66 16 25 C -0.10 -1.32 10.04 22.22 0.22 -1.10 16 26 C -0.12 -1.27 10.05 22.29 0.22 -1.04 16 27 C -0.12 -1.40 10.05 22.29 0.22 -1.17 16 28 C -0.10 -1.45 9.82 22.22 0.22 -1.23 16 29 C -0.14 -2.63 5.73 -19.72 -0.11 -2.75 16 30 C 0.15 6.01 5.60 86.36 0.48 6.49 16 31 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 32 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 33 H 0.05 2.82 6.06 -2.39 -0.01 2.81 16 34 H 0.07 2.24 8.14 -2.39 -0.02 2.23 16 35 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 37 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 40 H 0.41 8.82 7.70 -92.71 -0.71 8.11 16 41 H 0.13 1.87 7.94 -2.39 -0.02 1.86 16 42 H 0.11 1.99 8.14 -2.38 -0.02 1.97 16 43 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 44 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 46 H 0.15 0.81 8.06 -2.91 -0.02 0.79 16 47 H 0.15 1.01 8.06 -2.92 -0.02 0.99 16 48 H 0.14 1.55 7.93 -2.91 -0.02 1.53 16 49 H 0.06 2.19 7.14 -2.39 -0.02 2.18 16 50 H 0.01 0.21 8.14 -2.38 -0.02 0.19 16 Total: -1.00 -73.07 399.19 1.62 -71.45 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.22 Total: 21.06 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: 5.04 Total: 0.82 kcal Atomic # 7 Polarization: -103.43 SS G_CDS: -4.32 Total: -107.74 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -1.35 Total: -31.64 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -73.07 1.62 -71.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594422073.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.415 kcal (2) G-P(sol) polarization free energy of solvation -73.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds