Wall clock time and date at job start Wed Apr 1 2020 03:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.50701 * 109.47015 * 101.19593 * 3 2 1 5 5 C 1.38263 * 119.94005 * 270.03663 * 4 3 2 6 6 C 1.38145 * 120.05508 * 179.97438 * 5 4 3 7 7 C 1.38729 * 119.94376 * 359.97438 * 6 5 4 8 8 O 1.35902 * 120.05673 * 179.97438 * 7 6 5 9 9 C 1.42902 * 116.99895 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.47049 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.46886 * 54.99778 * 10 9 8 12 12 O 1.42910 * 109.46948 * 295.00085 * 10 9 8 13 13 C 1.53000 * 109.47459 * 175.00285 * 10 9 8 14 14 N 1.46891 * 109.47461 * 180.48113 * 13 10 9 15 15 C 1.46845 * 111.00097 * 200.04275 * 14 13 10 16 16 C 1.53038 * 109.52187 * 174.16289 * 15 14 13 17 17 C 1.53114 * 109.28185 * 59.17864 * 16 15 14 18 18 C 1.53120 * 109.16164 * 302.34442 * 17 16 15 19 19 H 1.09002 * 109.50356 * 297.71431 * 18 17 16 20 20 C 1.50699 * 109.50347 * 177.59204 * 18 17 16 21 21 H 1.07995 * 120.00424 * 275.42088 * 20 18 17 22 22 C 1.37885 * 119.99844 * 95.42648 * 20 18 17 23 23 N 1.31508 * 120.00031 * 174.91092 * 22 20 18 24 24 Si 1.86802 * 119.99759 * 354.90549 * 22 20 18 25 25 H 1.48501 * 109.46720 * 94.80773 * 24 22 20 26 26 H 1.48501 * 109.46842 * 214.80606 * 24 22 20 27 27 H 1.48493 * 109.47165 * 334.80598 * 24 22 20 28 28 C 1.46857 * 110.99964 * 75.83088 * 14 13 10 29 29 C 1.38732 * 119.89008 * 359.97438 * 7 6 5 30 30 C 1.38144 * 119.94278 * 0.02562 * 29 7 6 31 31 H 1.08994 * 109.47106 * 341.19146 * 3 2 1 32 32 H 1.09007 * 109.46939 * 221.19382 * 3 2 1 33 33 H 1.07997 * 119.97821 * 359.97438 * 5 4 3 34 34 H 1.08000 * 120.02737 * 180.25608 * 6 5 4 35 35 H 1.08995 * 109.47199 * 299.99853 * 9 8 7 36 36 H 1.09004 * 109.46925 * 59.99919 * 9 8 7 37 37 H 0.96699 * 113.99902 * 299.99373 * 12 10 9 38 38 H 1.09007 * 109.46184 * 300.48251 * 13 10 9 39 39 H 1.08999 * 109.47127 * 60.47292 * 13 10 9 40 40 H 1.09004 * 109.46214 * 294.17051 * 15 14 13 41 41 H 1.08992 * 109.46289 * 54.14492 * 15 14 13 42 42 H 1.09003 * 109.50471 * 299.23718 * 16 15 14 43 43 H 1.09002 * 109.50250 * 179.12008 * 16 15 14 44 44 H 1.09002 * 109.52510 * 182.43852 * 17 16 15 45 45 H 1.09001 * 109.57345 * 62.27863 * 17 16 15 46 46 H 0.96998 * 120.00184 * 179.97438 * 23 22 20 47 47 H 1.08997 * 109.45945 * 305.85956 * 28 14 13 48 48 H 1.09003 * 109.45648 * 65.83492 * 28 14 13 49 49 H 1.07995 * 120.03225 * 180.02562 * 29 7 6 50 50 H 1.07995 * 119.97414 * 180.02562 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1102 0.2768 -1.3938 5 6 3.3400 -0.7721 -2.2649 6 6 3.7998 -0.5217 -3.5433 7 6 4.0306 0.7835 -3.9529 8 8 4.4834 1.0325 -5.2098 9 6 4.6982 2.4004 -5.5630 10 6 5.2045 2.4816 -7.0045 11 1 4.5061 1.9668 -7.6643 12 8 6.4891 1.8618 -7.0938 13 6 5.3158 3.9487 -7.4242 14 7 5.7909 4.0263 -8.8120 15 6 6.3575 5.3499 -9.1010 16 6 6.9715 5.3483 -10.5028 17 6 5.8892 5.0007 -11.5285 18 6 5.2819 3.6398 -11.1768 19 1 6.0528 2.8714 -11.2345 20 6 4.1749 3.3170 -12.1471 21 1 3.1786 3.6967 -11.9755 22 6 4.4341 2.5365 -13.2538 23 7 3.4500 2.1715 -14.0461 24 14 6.1833 1.9979 -13.6279 25 1 6.4184 0.6478 -13.0557 26 1 6.3838 1.9540 -15.0986 27 1 7.1378 2.9635 -13.0267 28 6 4.7167 3.6909 -9.7555 29 6 3.7982 1.8342 -3.0773 30 6 3.3384 1.5786 -1.8000 31 1 2.9718 -0.9719 0.3313 32 1 2.9710 0.7742 0.6769 33 1 3.1598 -1.7880 -1.9457 34 1 3.9752 -1.3410 -4.2247 35 1 3.7610 2.9498 -5.4752 36 1 5.4392 2.8366 -4.8929 37 1 7.1623 2.2692 -6.5316 38 1 4.3376 4.4235 -7.3478 39 1 6.0206 4.4614 -6.7696 40 1 5.5693 6.1012 -9.0507 41 1 7.1286 5.5830 -8.3670 42 1 7.7691 4.6068 -10.5499 43 1 7.3781 6.3354 -10.7231 44 1 6.3314 4.9560 -12.5238 45 1 5.1102 5.7629 -11.5100 46 1 3.6324 1.6228 -14.8249 47 1 4.2963 2.7191 -9.4967 48 1 3.9364 4.4501 -9.7022 49 1 3.9767 2.8512 -3.3939 50 1 3.1570 2.3961 -1.1181 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595608980.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:28 Heat of formation + Delta-G solvation = -41.356144 kcal Electronic energy + Delta-G solvation = -29053.607912 eV Core-core repulsion = 25045.705184 eV Total energy + Delta-G solvation = -4007.902727 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.58538 -39.02581 -38.26453 -36.94795 -36.44020 -33.61494 -32.77036 -32.20448 -31.47248 -30.38247 -30.07443 -27.63577 -25.96210 -25.05971 -23.57220 -22.61351 -21.82837 -21.19731 -21.08293 -18.81024 -18.57658 -18.03801 -17.13864 -16.76113 -16.62815 -16.10159 -15.78252 -15.37972 -15.00343 -14.92960 -14.69621 -14.26256 -14.21682 -13.82493 -13.72550 -13.64602 -13.35095 -13.30004 -13.06441 -12.88366 -12.69513 -12.52281 -12.48637 -12.07252 -11.99195 -11.79945 -11.63824 -11.32285 -11.20254 -11.10328 -10.96940 -10.80643 -10.65380 -10.16682 -10.08354 -9.75991 -9.52715 -9.39295 -9.29028 -8.94205 -8.49465 -8.47043 -7.84661 -6.05365 -4.04635 0.92668 0.97139 2.39142 2.39844 2.81158 3.25332 3.35000 3.43223 3.48300 3.79211 4.12639 4.31486 4.34149 4.42192 4.47456 4.49484 4.66180 4.73939 4.85316 4.86212 4.95968 5.01336 5.09053 5.16772 5.23149 5.25807 5.31450 5.46278 5.48279 5.62570 5.62794 5.80420 5.84062 5.95401 5.98671 6.00886 6.10802 6.14431 6.30082 6.36647 6.37590 6.46651 6.68437 6.83075 6.89346 7.11471 7.17790 7.29921 7.44458 7.53909 7.60397 7.77271 7.87460 8.54728 8.99136 9.58859 11.07756 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016265 B = 0.001937 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.086867 B =14454.187387 C =15147.485448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C 0.207 3.793 3 C 0.024 3.976 4 C -0.142 4.142 5 C -0.064 4.064 6 C -0.151 4.151 7 C 0.143 3.857 8 O -0.298 6.298 9 C 0.028 3.972 10 C 0.116 3.884 11 H 0.113 0.887 12 O -0.532 6.532 13 C 0.028 3.972 14 N -0.531 5.531 15 C 0.065 3.935 16 C -0.120 4.120 17 C -0.115 4.115 18 C 0.022 3.978 19 H 0.041 0.959 20 C -0.513 4.513 21 H 0.070 0.930 22 C 0.072 3.928 23 N -0.901 5.901 24 Si 0.877 3.123 25 H -0.277 1.277 26 H -0.291 1.291 27 H -0.259 1.259 28 C 0.072 3.928 29 C -0.212 4.212 30 C -0.064 4.064 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.132 0.868 34 H 0.135 0.865 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.365 0.635 38 H 0.042 0.958 39 H 0.071 0.929 40 H 0.025 0.975 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.052 0.948 44 H 0.052 0.948 45 H 0.048 0.952 46 H 0.263 0.737 47 H 0.068 0.932 48 H 0.023 0.977 49 H 0.130 0.870 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.045 0.437 28.276 28.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.111 5.111 2 C -0.111 4.111 3 C -0.015 4.015 4 C -0.144 4.144 5 C -0.082 4.082 6 C -0.170 4.170 7 C 0.097 3.903 8 O -0.211 6.211 9 C -0.048 4.048 10 C 0.055 3.945 11 H 0.130 0.870 12 O -0.335 6.335 13 C -0.101 4.101 14 N -0.255 5.255 15 C -0.063 4.063 16 C -0.158 4.158 17 C -0.153 4.153 18 C 0.002 3.998 19 H 0.059 0.941 20 C -0.552 4.552 21 H 0.088 0.912 22 C -0.130 4.130 23 N -0.539 5.539 24 Si 0.704 3.296 25 H -0.203 1.203 26 H -0.217 1.217 27 H -0.183 1.183 28 C -0.055 4.055 29 C -0.230 4.230 30 C -0.082 4.082 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.150 0.850 34 H 0.153 0.847 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.211 0.789 38 H 0.060 0.940 39 H 0.089 0.911 40 H 0.044 0.956 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.073 0.927 47 H 0.086 0.914 48 H 0.041 0.959 49 H 0.148 0.852 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.385 -0.519 27.451 27.803 hybrid contribution 0.776 0.990 0.214 1.276 sum 5.161 0.472 27.665 28.146 Atomic orbital electron populations 1.81259 1.13038 1.08574 1.08236 1.29163 0.95150 0.93459 0.93360 1.18073 0.81581 1.06039 0.95855 1.19264 1.06089 0.93799 0.95199 1.20866 0.96203 0.98916 0.92258 1.20497 1.04726 0.94696 0.97071 1.19196 0.92828 0.94065 0.84208 1.86208 1.79593 1.28054 1.27205 1.23694 1.01263 0.81345 0.98509 1.21928 0.86646 0.93825 0.92075 0.86963 1.86742 1.19023 1.58680 1.69061 1.22591 0.99547 0.95424 0.92503 1.61889 1.34712 1.28136 1.00790 1.22002 0.97545 0.89017 0.97717 1.21675 0.99423 1.00209 0.94491 1.21911 0.96167 0.99973 0.97217 1.19130 0.96271 0.93312 0.91041 0.94084 1.20944 0.96007 1.31650 1.06549 0.91224 1.25048 0.96853 0.95082 0.96004 1.69917 1.31456 1.36814 1.15711 0.86848 0.85998 0.79668 0.77075 1.20332 1.21746 1.18331 1.22318 0.90498 0.99304 0.93352 1.21270 1.07676 0.98817 0.95278 1.20821 0.96093 0.95958 0.95318 0.86454 0.86555 0.84993 0.84674 0.91103 0.91641 0.78887 0.93956 0.91078 0.95629 0.92126 0.91853 0.92937 0.92883 0.93315 0.92723 0.91356 0.95878 0.85240 0.85501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -4.81 18.54 42.15 0.78 -4.02 16 2 C 0.21 1.50 15.42 -20.76 -0.32 1.18 16 3 C 0.02 0.07 5.83 -30.67 -0.18 -0.11 16 4 C -0.14 -0.82 5.09 -104.60 -0.53 -1.35 16 5 C -0.06 -0.43 9.69 -39.61 -0.38 -0.81 16 6 C -0.15 -1.37 9.99 -39.43 -0.39 -1.76 16 7 C 0.14 1.45 6.69 -39.22 -0.26 1.19 16 8 O -0.30 -3.56 10.10 -24.28 -0.25 -3.80 16 9 C 0.03 0.27 4.37 37.16 0.16 0.43 16 10 C 0.12 1.44 3.31 -26.73 -0.09 1.35 16 11 H 0.11 1.70 6.83 -51.93 -0.35 1.35 16 12 O -0.53 -7.32 13.18 -40.08 -0.53 -7.85 16 13 C 0.03 0.35 4.66 -3.83 -0.02 0.33 16 14 N -0.53 -8.67 4.46 -234.67 -1.05 -9.71 16 15 C 0.07 0.97 5.43 -3.83 -0.02 0.95 16 16 C -0.12 -2.02 6.09 -26.65 -0.16 -2.18 16 17 C -0.11 -2.38 5.07 -26.61 -0.13 -2.51 16 18 C 0.02 0.51 1.80 -91.69 -0.17 0.34 16 19 H 0.04 1.01 5.59 -51.93 -0.29 0.72 16 20 C -0.51 -14.27 8.86 -34.44 -0.31 -14.57 16 21 H 0.07 2.10 8.06 -52.49 -0.42 1.68 16 22 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 23 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 24 Si 0.88 21.87 26.61 -169.99 -4.52 17.35 16 25 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 27 H -0.26 -6.16 6.06 56.52 0.34 -5.81 16 28 C 0.07 1.44 4.55 -3.83 -0.02 1.42 16 29 C -0.21 -1.72 9.04 -39.43 -0.36 -2.08 16 30 C -0.06 -0.41 9.69 -39.61 -0.38 -0.79 16 31 H 0.12 0.06 8.08 -51.93 -0.42 -0.36 16 32 H 0.12 0.06 8.09 -51.93 -0.42 -0.36 16 33 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 34 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.07 0.61 7.66 -51.93 -0.40 0.21 16 36 H 0.07 0.48 7.66 -51.93 -0.40 0.08 16 37 H 0.37 3.48 9.05 45.56 0.41 3.89 16 38 H 0.04 0.50 8.00 -51.93 -0.42 0.09 16 39 H 0.07 0.69 7.79 -51.93 -0.40 0.28 16 40 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.76 7.93 -51.93 -0.41 0.35 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.05 1.15 7.12 -51.93 -0.37 0.78 16 45 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 47 H 0.07 1.41 6.71 -51.93 -0.35 1.06 16 48 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.13 0.87 6.30 -52.49 -0.33 0.54 16 50 H 0.13 0.53 8.06 -52.49 -0.42 0.10 16 LS Contribution 406.23 15.07 6.12 6.12 Total: -1.00 -35.31 406.23 -9.47 -44.79 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -7.15 Total: 0.98 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: -3.66 Total: -16.99 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: 0.51 Total: -40.60 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: -0.77 Total: -11.65 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.52 Total: 17.35 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.31 -9.47 -44.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595608980.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.430 kcal (2) G-P(sol) polarization free energy of solvation -35.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds