Wall clock time and date at job start Wed Apr 1 2020 03:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.50698 * 109.47344 * 37.52362 * 3 2 1 5 5 C 1.38275 * 119.94536 * 89.99624 * 4 3 2 6 6 C 1.38145 * 120.05329 * 180.02562 * 5 4 3 7 7 C 1.38727 * 119.94769 * 359.97438 * 6 5 4 8 8 O 1.35893 * 120.05556 * 180.02562 * 7 6 5 9 9 C 1.42908 * 117.00062 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.46963 * 180.02562 * 9 8 7 11 11 H 1.09002 * 109.46992 * 304.99576 * 10 9 8 12 12 O 1.42900 * 109.47435 * 64.99970 * 10 9 8 13 13 C 1.53001 * 109.46702 * 185.00133 * 10 9 8 14 14 N 1.46907 * 109.47112 * 178.38408 * 13 10 9 15 15 C 1.46847 * 110.99960 * 164.06060 * 14 13 10 16 16 C 1.53035 * 109.52236 * 185.83875 * 15 14 13 17 17 C 1.53119 * 109.27873 * 300.82119 * 16 15 14 18 18 C 1.53119 * 109.16174 * 57.65203 * 17 16 15 19 19 H 1.09010 * 109.50156 * 62.32405 * 18 17 16 20 20 C 1.50692 * 109.50794 * 182.40279 * 18 17 16 21 21 H 1.08004 * 120.00326 * 119.99818 * 20 18 17 22 22 C 1.37884 * 120.00180 * 300.00573 * 20 18 17 23 23 N 1.31514 * 119.99511 * 359.97438 * 22 20 18 24 24 Si 1.86801 * 120.00023 * 179.71684 * 22 20 18 25 25 H 1.48501 * 109.46608 * 60.00072 * 24 22 20 26 26 H 1.48500 * 109.46923 * 179.97438 * 24 22 20 27 27 H 1.48490 * 109.47272 * 300.00231 * 24 22 20 28 28 C 1.46844 * 110.99642 * 288.27005 * 14 13 10 29 29 C 1.38739 * 119.88696 * 0.28091 * 7 6 5 30 30 C 1.38139 * 119.94103 * 359.42109 * 29 7 6 31 31 H 1.08998 * 109.46957 * 277.51925 * 3 2 1 32 32 H 1.09001 * 109.46887 * 157.52151 * 3 2 1 33 33 H 1.07997 * 119.96702 * 0.02562 * 5 4 3 34 34 H 1.08006 * 120.02257 * 180.02562 * 6 5 4 35 35 H 1.08995 * 109.46839 * 59.99963 * 9 8 7 36 36 H 1.09002 * 109.46786 * 299.99851 * 9 8 7 37 37 H 0.96700 * 113.99981 * 60.00241 * 12 10 9 38 38 H 1.08995 * 109.47563 * 58.38367 * 13 10 9 39 39 H 1.09000 * 109.46975 * 298.38004 * 13 10 9 40 40 H 1.09000 * 109.46465 * 65.82191 * 15 14 13 41 41 H 1.09001 * 109.45141 * 305.84955 * 15 14 13 42 42 H 1.09001 * 109.50539 * 180.87862 * 16 15 14 43 43 H 1.09004 * 109.50174 * 60.76146 * 16 15 14 44 44 H 1.08995 * 109.52243 * 297.75167 * 17 16 15 45 45 H 1.09004 * 109.57419 * 177.58645 * 17 16 15 46 46 H 0.97003 * 119.99349 * 179.97438 * 23 22 20 47 47 H 1.08998 * 109.46374 * 54.14846 * 28 14 13 48 48 H 1.08998 * 109.46335 * 294.17549 * 28 14 13 49 49 H 1.08001 * 120.02288 * 179.72462 * 29 7 6 50 50 H 1.08000 * 119.97185 * 180.31792 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1109 -1.1259 -0.8654 5 6 3.3409 -0.9122 -2.2120 6 6 3.8013 -1.9435 -3.0075 7 6 4.0336 -3.1942 -2.4541 8 8 4.4871 -4.2102 -3.2345 9 6 4.7035 -5.4709 -2.5973 10 6 5.2103 -6.4825 -3.6272 11 1 4.5115 -6.5319 -4.4623 12 8 6.4942 -6.0745 -4.1039 13 6 5.3232 -7.8617 -2.9745 14 7 5.7728 -8.8408 -3.9732 15 6 6.2526 -10.0690 -3.3271 16 6 6.8456 -11.0044 -4.3832 17 6 5.7721 -11.3381 -5.4229 18 6 5.2547 -10.0387 -6.0461 19 1 6.0705 -9.5329 -6.5627 20 6 4.1561 -10.3541 -7.0281 21 1 3.1671 -9.9457 -6.8816 22 6 4.4135 -11.1643 -8.1137 23 7 5.6179 -11.6613 -8.2924 24 14 3.0496 -11.5617 -9.3267 25 1 2.5420 -10.3034 -9.9303 26 1 3.5803 -12.4444 -10.3965 27 1 1.9426 -12.2524 -8.6180 28 6 4.7079 -9.1313 -4.9417 29 6 3.7971 -3.4076 -1.1038 30 6 3.3425 -2.3714 -0.3114 31 1 2.9714 -0.1337 1.0188 32 1 2.9709 0.9504 -0.3929 33 1 3.1603 0.0618 -2.6422 34 1 3.9812 -1.7759 -4.0592 35 1 3.7668 -5.8267 -2.1684 36 1 5.4447 -5.3557 -1.8064 37 1 7.1676 -6.0090 -3.4130 38 1 4.3498 -8.1603 -2.5855 39 1 6.0435 -7.8191 -2.1575 40 1 5.4205 -10.5658 -2.8280 41 1 7.0185 -9.8178 -2.5933 42 1 7.1875 -11.9225 -3.9055 43 1 7.6865 -10.5134 -4.8732 44 1 4.9483 -11.8637 -4.9400 45 1 6.2010 -11.9697 -6.2009 46 1 5.7988 -12.2316 -9.0559 47 1 4.3519 -8.1993 -5.3805 48 1 3.8831 -9.6325 -4.4351 49 1 3.9729 -4.3816 -0.6717 50 1 3.1631 -2.5355 0.7409 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595608981.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:32 Heat of formation + Delta-G solvation = -41.498791 kcal Electronic energy + Delta-G solvation = -28973.337332 eV Core-core repulsion = 24965.428419 eV Total energy + Delta-G solvation = -4007.908913 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.57648 -38.94754 -38.17272 -36.90007 -36.38502 -33.64445 -32.76609 -31.96043 -31.45419 -29.99594 -29.88500 -27.60031 -25.81350 -24.97304 -23.50042 -22.52640 -21.81614 -21.30922 -20.95177 -18.64168 -18.56171 -18.03256 -17.06841 -16.62533 -16.30398 -16.07453 -15.71013 -15.19019 -14.97032 -14.89368 -14.60051 -14.41838 -14.15427 -13.82896 -13.70963 -13.62987 -13.33425 -13.09340 -12.99527 -12.79604 -12.56179 -12.43766 -12.23222 -12.05034 -11.80218 -11.66678 -11.54419 -11.30603 -11.17750 -10.92319 -10.84199 -10.66302 -10.62414 -10.12288 -9.99243 -9.81000 -9.44947 -9.38964 -9.04726 -8.69363 -8.48848 -8.28190 -7.70406 -5.95317 -4.01405 0.93029 0.97498 2.38735 2.39383 2.83059 3.25574 3.33802 3.38431 3.40964 3.79123 4.19712 4.32171 4.34925 4.44866 4.47578 4.50558 4.69448 4.76979 4.86759 4.89668 4.99899 5.01593 5.13072 5.23589 5.24639 5.32730 5.34700 5.58937 5.62978 5.63700 5.79783 5.84361 5.98023 6.01403 6.04380 6.11051 6.21347 6.35574 6.37703 6.48864 6.68690 6.74131 6.96295 7.12301 7.17438 7.21355 7.37954 7.59713 7.72126 7.78574 7.83888 8.10930 8.19123 8.49380 9.02199 9.62601 11.10639 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015135 B = 0.001879 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.617581 B =14894.688609 C =15936.840719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C 0.207 3.793 3 C 0.024 3.976 4 C -0.142 4.142 5 C -0.064 4.064 6 C -0.152 4.152 7 C 0.143 3.857 8 O -0.298 6.298 9 C 0.028 3.972 10 C 0.116 3.884 11 H 0.112 0.888 12 O -0.532 6.532 13 C 0.028 3.972 14 N -0.526 5.526 15 C 0.065 3.935 16 C -0.117 4.117 17 C -0.111 4.111 18 C 0.056 3.944 19 H 0.036 0.964 20 C -0.515 4.515 21 H 0.052 0.948 22 C 0.063 3.937 23 N -0.888 5.888 24 Si 0.890 3.110 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.279 1.279 28 C 0.066 3.934 29 C -0.212 4.212 30 C -0.064 4.064 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.132 0.868 34 H 0.135 0.865 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.366 0.634 38 H 0.038 0.962 39 H 0.071 0.929 40 H 0.022 0.978 41 H 0.056 0.944 42 H 0.046 0.954 43 H 0.062 0.938 44 H 0.029 0.971 45 H 0.091 0.909 46 H 0.260 0.740 47 H 0.060 0.940 48 H 0.018 0.982 49 H 0.130 0.870 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.394 19.145 19.409 27.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.112 5.112 2 C -0.111 4.111 3 C -0.016 4.016 4 C -0.144 4.144 5 C -0.083 4.083 6 C -0.170 4.170 7 C 0.097 3.903 8 O -0.211 6.211 9 C -0.048 4.048 10 C 0.056 3.944 11 H 0.129 0.871 12 O -0.335 6.335 13 C -0.101 4.101 14 N -0.251 5.251 15 C -0.063 4.063 16 C -0.155 4.155 17 C -0.149 4.149 18 C 0.037 3.963 19 H 0.054 0.946 20 C -0.554 4.554 21 H 0.070 0.930 22 C -0.138 4.138 23 N -0.526 5.526 24 Si 0.718 3.282 25 H -0.203 1.203 26 H -0.213 1.213 27 H -0.204 1.204 28 C -0.061 4.061 29 C -0.230 4.230 30 C -0.082 4.082 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.150 0.850 34 H 0.153 0.847 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.212 0.788 38 H 0.056 0.944 39 H 0.089 0.911 40 H 0.040 0.960 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.081 0.919 44 H 0.047 0.953 45 H 0.110 0.890 46 H 0.070 0.930 47 H 0.079 0.921 48 H 0.036 0.964 49 H 0.148 0.852 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.089 19.216 18.243 26.497 hybrid contribution -0.826 -0.861 0.621 1.345 sum -0.915 18.355 18.864 26.336 Atomic orbital electron populations 1.81260 1.13041 1.08387 1.08477 1.29167 0.95152 0.93372 0.93400 1.18072 0.81567 0.99578 1.02339 1.19262 1.06100 0.94665 0.94351 1.20866 0.96238 0.98725 0.92426 1.20493 1.04740 0.90546 1.01233 1.19200 0.92770 0.88647 0.89672 1.86206 1.79541 1.18529 1.36782 1.23710 1.01227 0.82829 0.97062 1.21925 0.86709 0.89325 0.96481 0.87055 1.86741 1.19017 1.90059 1.37638 1.22601 0.99418 0.93141 0.94960 1.61872 1.37854 1.10677 1.14671 1.22036 0.97692 0.90342 0.96215 1.21673 1.00157 0.96647 0.97023 1.21661 0.95492 1.01030 0.96730 1.18646 0.96166 0.90797 0.90698 0.94573 1.21099 0.96336 1.29926 1.08045 0.92974 1.24930 0.95385 0.95912 0.97597 1.69880 1.19825 1.33588 1.29342 0.86692 0.82295 0.78291 0.80902 1.20283 1.21315 1.20438 1.22383 0.90538 0.99593 0.93561 1.21277 1.07679 1.00791 0.93299 1.20821 0.96106 0.91597 0.99658 0.86547 0.86450 0.85005 0.84680 0.91170 0.91605 0.78826 0.94379 0.91085 0.96000 0.92506 0.93515 0.91933 0.95262 0.89039 0.93015 0.92127 0.96402 0.85230 0.85506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -4.78 18.54 42.16 0.78 -4.00 16 2 C 0.21 1.50 15.42 -20.76 -0.32 1.18 16 3 C 0.02 0.07 5.83 -30.67 -0.18 -0.11 16 4 C -0.14 -0.82 5.09 -104.60 -0.53 -1.36 16 5 C -0.06 -0.43 9.69 -39.60 -0.38 -0.81 16 6 C -0.15 -1.36 9.99 -39.44 -0.39 -1.76 16 7 C 0.14 1.46 6.69 -39.22 -0.26 1.20 16 8 O -0.30 -3.58 10.10 -24.25 -0.24 -3.83 16 9 C 0.03 0.28 4.37 37.16 0.16 0.44 16 10 C 0.12 1.50 3.26 -26.73 -0.09 1.41 16 11 H 0.11 1.72 6.59 -51.93 -0.34 1.38 16 12 O -0.53 -7.60 13.20 -40.08 -0.53 -8.13 16 13 C 0.03 0.37 4.63 -3.82 -0.02 0.35 16 14 N -0.53 -9.23 4.51 -234.67 -1.06 -10.28 16 15 C 0.06 1.08 5.44 -3.83 -0.02 1.06 16 16 C -0.12 -2.24 6.09 -26.65 -0.16 -2.40 16 17 C -0.11 -2.61 5.03 -26.61 -0.13 -2.74 16 18 C 0.06 1.40 2.26 -91.69 -0.21 1.19 16 19 H 0.04 1.02 8.14 -51.92 -0.42 0.60 16 20 C -0.52 -14.18 8.56 -34.44 -0.29 -14.47 16 21 H 0.05 1.41 7.74 -52.48 -0.41 1.01 16 22 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 23 N -0.89 -25.41 11.35 55.43 0.63 -24.78 16 24 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 28 C 0.07 1.38 4.53 -3.83 -0.02 1.36 16 29 C -0.21 -1.74 9.04 -39.43 -0.36 -2.09 16 30 C -0.06 -0.41 9.69 -39.61 -0.38 -0.80 16 31 H 0.12 0.06 8.08 -51.93 -0.42 -0.36 16 32 H 0.12 0.06 8.08 -51.93 -0.42 -0.36 16 33 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 34 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 35 H 0.07 0.62 7.65 -51.93 -0.40 0.22 16 36 H 0.07 0.51 7.67 -51.93 -0.40 0.11 16 37 H 0.37 3.69 9.05 45.56 0.41 4.11 16 38 H 0.04 0.48 8.06 -51.93 -0.42 0.06 16 39 H 0.07 0.75 7.87 -51.93 -0.41 0.35 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.80 7.96 -51.93 -0.41 0.39 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.09 2.41 6.15 -51.93 -0.32 2.09 16 46 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 47 H 0.06 1.27 6.47 -51.93 -0.34 0.94 16 48 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.13 0.89 6.30 -52.49 -0.33 0.56 16 50 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 LS Contribution 408.48 15.07 6.16 6.16 Total: -1.00 -33.77 408.48 -10.11 -43.88 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -7.14 Total: 1.30 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: -3.69 Total: -16.70 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.35 Total: -39.07 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: -0.77 Total: -11.96 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.77 -10.11 -43.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595608981.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.380 kcal (2) G-P(sol) polarization free energy of solvation -33.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds