Wall clock time and date at job start Wed Apr 1 2020 03:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.50703 * 109.47303 * 316.31486 * 3 2 1 5 5 C 1.38271 * 119.94563 * 89.99582 * 4 3 2 6 6 C 1.38144 * 120.05325 * 179.97438 * 5 4 3 7 7 C 1.38722 * 119.94814 * 0.02562 * 6 5 4 8 8 O 1.35898 * 120.05841 * 180.02562 * 7 6 5 9 9 C 1.42898 * 117.00299 * 179.97438 * 8 7 6 10 10 C 1.53006 * 109.47348 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.46819 * 305.00516 * 10 9 8 12 12 O 1.42896 * 109.46760 * 65.00085 * 10 9 8 13 13 C 1.53000 * 109.47136 * 185.00237 * 10 9 8 14 14 N 1.46901 * 109.47038 * 179.74279 * 13 10 9 15 15 C 1.46841 * 111.00106 * 294.03308 * 14 13 10 16 16 C 1.53039 * 109.52725 * 174.15729 * 15 14 13 17 17 C 1.53118 * 109.27298 * 59.18050 * 16 15 14 18 18 C 1.53125 * 109.16273 * 302.34639 * 17 16 15 19 19 H 1.09005 * 109.49740 * 297.71730 * 18 17 16 20 20 C 1.50694 * 109.50332 * 177.59956 * 18 17 16 21 21 H 1.08011 * 119.99948 * 239.99852 * 20 18 17 22 22 C 1.37875 * 120.00519 * 60.00133 * 20 18 17 23 23 N 1.31513 * 119.99525 * 359.97438 * 22 20 18 24 24 Si 1.86794 * 120.00215 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47436 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47084 * 119.99634 * 24 22 20 27 27 H 1.48502 * 109.47245 * 239.99801 * 24 22 20 28 28 C 1.46843 * 110.99865 * 169.82164 * 14 13 10 29 29 C 1.38731 * 119.88945 * 0.26817 * 7 6 5 30 30 C 1.38150 * 119.94282 * 359.47535 * 29 7 6 31 31 H 1.09002 * 109.47234 * 196.31306 * 3 2 1 32 32 H 1.09005 * 109.47499 * 76.31109 * 3 2 1 33 33 H 1.08002 * 119.96913 * 0.03064 * 5 4 3 34 34 H 1.08003 * 120.02081 * 179.97438 * 6 5 4 35 35 H 1.09008 * 109.47099 * 59.99900 * 9 8 7 36 36 H 1.08997 * 109.47479 * 299.99870 * 9 8 7 37 37 H 0.96698 * 114.00284 * 60.00610 * 12 10 9 38 38 H 1.08999 * 109.47367 * 59.74485 * 13 10 9 39 39 H 1.09002 * 109.46921 * 299.74238 * 13 10 9 40 40 H 1.09005 * 109.46181 * 294.18070 * 15 14 13 41 41 H 1.09004 * 109.46077 * 54.15367 * 15 14 13 42 42 H 1.08998 * 109.50388 * 179.11626 * 16 15 14 43 43 H 1.08992 * 109.50297 * 299.24021 * 16 15 14 44 44 H 1.09002 * 109.52650 * 62.24797 * 17 16 15 45 45 H 1.08996 * 109.52285 * 182.38114 * 17 16 15 46 46 H 0.97009 * 119.99837 * 180.02562 * 23 22 20 47 47 H 1.09000 * 109.46229 * 305.85204 * 28 14 13 48 48 H 1.09001 * 109.46537 * 65.82566 * 28 14 13 49 49 H 1.08005 * 120.03209 * 179.72597 * 29 7 6 50 50 H 1.08001 * 119.97245 * 180.27239 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1108 -1.0266 0.9814 5 6 3.3414 -2.3246 0.5644 6 6 3.8028 -3.2679 1.4620 7 6 4.0344 -2.9122 2.7827 8 8 4.4888 -3.8382 3.6674 9 6 4.7054 -3.4008 5.0105 10 6 5.2121 -4.5731 5.8532 11 1 4.5132 -5.4058 5.7746 12 8 6.4959 -4.9821 5.3771 13 6 5.3253 -4.1384 7.3158 14 7 5.8059 -5.2657 8.1258 15 6 4.8166 -6.3505 8.1576 16 6 5.4074 -7.5604 8.8849 17 6 5.7933 -7.1546 10.3100 18 6 6.7873 -5.9914 10.2496 19 1 7.6947 -6.3144 9.7392 20 6 7.1273 -5.5470 11.6488 21 1 6.9177 -4.5340 11.9596 22 6 7.7058 -6.4333 12.5324 23 7 7.9605 -7.6668 12.1542 24 14 8.1278 -5.8820 14.2666 25 1 7.7433 -4.4583 14.4408 26 1 7.3870 -6.7176 15.2456 27 1 9.5879 -6.0322 14.4922 28 6 6.1565 -4.8270 9.4826 29 6 3.7964 -1.6107 3.2000 30 6 3.3400 -0.6697 2.2973 31 1 2.9709 0.9871 0.2887 32 1 2.9715 -0.2424 -0.9985 33 1 3.1614 -2.6009 -0.4640 34 1 3.9824 -4.2817 1.1359 35 1 3.7686 -3.0318 5.4280 36 1 5.4461 -2.6012 5.0173 37 1 7.1694 -4.2895 5.4177 38 1 4.3469 -3.8221 7.6776 39 1 6.0276 -3.3086 7.3949 40 1 3.9231 -6.0119 8.6822 41 1 4.5541 -6.6325 7.1379 42 1 4.6672 -8.3598 8.9221 43 1 6.2929 -7.9080 8.3531 44 1 4.9016 -6.8436 10.8544 45 1 6.2533 -8.0020 10.8182 46 1 8.3673 -8.2906 12.7759 47 1 6.8671 -4.0025 9.4254 48 1 5.2568 -4.4956 10.0011 49 1 3.9717 -1.3323 4.2287 50 1 3.1589 0.3448 2.6207 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595608982.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:35 Heat of formation + Delta-G solvation = -41.754128 kcal Electronic energy + Delta-G solvation = -28800.679504 eV Core-core repulsion = 24792.759519 eV Total energy + Delta-G solvation = -4007.919985 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.63074 -39.00338 -38.20427 -36.93341 -36.42566 -33.66940 -32.80803 -31.90174 -31.49777 -30.27410 -29.72625 -27.64351 -25.84686 -24.99734 -23.49576 -22.44919 -21.86083 -21.72054 -20.71022 -18.62994 -18.60804 -18.07152 -17.12275 -16.69569 -16.33398 -16.12022 -15.77008 -15.08826 -15.00406 -14.95585 -14.79971 -14.44918 -14.10504 -13.80388 -13.75505 -13.57093 -13.42671 -13.32443 -13.03776 -12.77007 -12.60296 -12.35887 -12.28362 -12.08006 -11.84160 -11.75897 -11.46007 -11.28281 -11.24614 -10.98895 -10.89411 -10.68636 -10.61697 -10.11896 -10.04037 -9.83628 -9.46730 -9.43551 -9.04360 -8.70826 -8.54186 -8.31305 -7.70275 -5.98278 -4.04822 0.88288 0.92813 2.35051 2.35869 2.77024 3.21027 3.28711 3.36959 3.39942 3.75281 4.17124 4.28332 4.30665 4.40081 4.44964 4.47459 4.65681 4.70120 4.81785 4.83967 4.94284 4.98151 5.07861 5.19426 5.22382 5.27999 5.31859 5.57887 5.59183 5.71806 5.79236 5.80525 5.93088 5.95117 6.06234 6.06632 6.25255 6.31762 6.36069 6.48149 6.71348 6.74542 6.93860 7.06291 7.13667 7.21597 7.37317 7.61092 7.68917 7.75032 7.81133 8.07528 8.17155 8.46538 8.99420 9.59609 11.07602 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.027247 B = 0.001609 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.404825 B =17401.031478 C =17772.297101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C 0.207 3.793 3 C 0.024 3.976 4 C -0.141 4.141 5 C -0.065 4.065 6 C -0.152 4.152 7 C 0.142 3.858 8 O -0.300 6.300 9 C 0.027 3.973 10 C 0.116 3.884 11 H 0.107 0.893 12 O -0.534 6.534 13 C 0.026 3.974 14 N -0.525 5.525 15 C 0.061 3.939 16 C -0.117 4.117 17 C -0.111 4.111 18 C 0.055 3.945 19 H 0.035 0.965 20 C -0.516 4.516 21 H 0.053 0.947 22 C 0.063 3.937 23 N -0.887 5.887 24 Si 0.890 3.110 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.284 1.284 28 C 0.069 3.931 29 C -0.211 4.211 30 C -0.063 4.063 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.132 0.868 34 H 0.135 0.865 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.371 0.629 38 H 0.036 0.964 39 H 0.076 0.924 40 H 0.021 0.979 41 H 0.060 0.940 42 H 0.046 0.954 43 H 0.062 0.938 44 H 0.028 0.972 45 H 0.091 0.909 46 H 0.259 0.741 47 H 0.058 0.942 48 H 0.018 0.982 49 H 0.131 0.869 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.217 13.553 -23.140 27.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.112 5.112 2 C -0.111 4.111 3 C -0.016 4.016 4 C -0.143 4.143 5 C -0.083 4.083 6 C -0.170 4.170 7 C 0.096 3.904 8 O -0.213 6.213 9 C -0.049 4.049 10 C 0.055 3.945 11 H 0.125 0.875 12 O -0.338 6.338 13 C -0.103 4.103 14 N -0.250 5.250 15 C -0.067 4.067 16 C -0.155 4.155 17 C -0.149 4.149 18 C 0.036 3.964 19 H 0.054 0.946 20 C -0.554 4.554 21 H 0.071 0.929 22 C -0.138 4.138 23 N -0.525 5.525 24 Si 0.718 3.282 25 H -0.199 1.199 26 H -0.211 1.211 27 H -0.210 1.210 28 C -0.058 4.058 29 C -0.230 4.230 30 C -0.081 4.081 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.150 0.850 34 H 0.152 0.848 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.217 0.783 38 H 0.054 0.946 39 H 0.095 0.905 40 H 0.039 0.961 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.081 0.919 44 H 0.047 0.953 45 H 0.109 0.891 46 H 0.069 0.931 47 H 0.077 0.923 48 H 0.036 0.964 49 H 0.148 0.852 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.692 12.435 -23.396 27.884 hybrid contribution 0.088 1.372 1.731 2.211 sum -8.604 13.808 -21.664 27.093 Atomic orbital electron populations 1.81254 1.13046 1.08437 1.08455 1.29159 0.95146 0.93372 0.93377 1.18081 0.81568 1.00716 1.01249 1.19270 1.06015 0.94573 0.94424 1.20864 0.96269 0.91700 0.99455 1.20470 1.04858 1.01095 0.90622 1.19185 0.92875 0.88162 0.90155 1.86180 1.79608 1.35951 1.19520 1.23721 1.01337 0.99202 0.80687 1.21929 0.86682 0.95611 0.90248 0.87542 1.86672 1.19075 1.41912 1.86162 1.22629 0.99394 0.95228 0.93015 1.61883 1.41058 1.07386 1.14640 1.22097 0.92492 0.93060 0.99056 1.21660 0.99819 0.95116 0.98861 1.21657 0.98255 1.02510 0.92450 1.18667 0.94281 0.89792 0.93653 0.94640 1.21174 1.40107 0.97322 0.96833 0.92852 1.24933 0.95547 0.94955 0.98392 1.69906 1.43162 1.04250 1.35232 0.86578 0.78064 0.78686 0.84879 1.19915 1.21110 1.21020 1.22336 0.98004 0.99965 0.85502 1.21294 1.07502 0.93073 1.01088 1.20842 0.96005 0.99261 0.92033 0.86497 0.86427 0.85006 0.84759 0.91177 0.91382 0.78250 0.94559 0.90535 0.96056 0.92184 0.93545 0.91875 0.95268 0.89074 0.93089 0.92322 0.96373 0.85165 0.85444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -4.58 18.54 42.15 0.78 -3.80 16 2 C 0.21 1.41 15.41 -20.76 -0.32 1.09 16 3 C 0.02 0.06 5.83 -30.67 -0.18 -0.12 16 4 C -0.14 -0.75 5.09 -104.60 -0.53 -1.28 16 5 C -0.06 -0.39 9.69 -39.60 -0.38 -0.77 16 6 C -0.15 -1.24 9.99 -39.44 -0.39 -1.63 16 7 C 0.14 1.34 6.69 -39.22 -0.26 1.08 16 8 O -0.30 -3.30 10.10 -24.27 -0.25 -3.54 16 9 C 0.03 0.25 4.37 37.16 0.16 0.41 16 10 C 0.12 1.36 3.13 -26.73 -0.08 1.28 16 11 H 0.11 1.38 6.42 -51.93 -0.33 1.04 16 12 O -0.53 -7.18 13.17 -40.08 -0.53 -7.71 16 13 C 0.03 0.35 4.62 -3.82 -0.02 0.33 16 14 N -0.53 -9.21 4.53 -234.67 -1.06 -10.27 16 15 C 0.06 1.05 5.29 -3.84 -0.02 1.03 16 16 C -0.12 -2.30 6.09 -26.65 -0.16 -2.46 16 17 C -0.11 -2.60 5.02 -26.61 -0.13 -2.74 16 18 C 0.05 1.35 2.26 -91.69 -0.21 1.15 16 19 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 20 C -0.52 -13.94 8.56 -34.44 -0.29 -14.24 16 21 H 0.05 1.42 7.74 -52.48 -0.41 1.02 16 22 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 23 N -0.89 -25.15 11.35 55.43 0.63 -24.52 16 24 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 25 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 C 0.07 1.40 4.68 -3.83 -0.02 1.38 16 29 C -0.21 -1.63 9.04 -39.43 -0.36 -1.99 16 30 C -0.06 -0.39 9.69 -39.60 -0.38 -0.77 16 31 H 0.12 0.03 8.08 -51.93 -0.42 -0.39 16 32 H 0.12 0.01 8.08 -51.93 -0.42 -0.41 16 33 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 34 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 35 H 0.07 0.56 7.65 -51.92 -0.40 0.17 16 36 H 0.07 0.51 7.67 -51.93 -0.40 0.11 16 37 H 0.37 3.74 9.05 45.56 0.41 4.15 16 38 H 0.04 0.45 8.12 -51.93 -0.42 0.03 16 39 H 0.08 0.90 7.98 -51.93 -0.41 0.49 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.94 6.22 -51.93 -0.32 0.62 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 44 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.09 2.41 6.15 -51.93 -0.32 2.09 16 46 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 47 H 0.06 1.17 8.01 -51.93 -0.42 0.75 16 48 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.13 0.86 6.30 -52.48 -0.33 0.53 16 50 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 LS Contribution 408.16 15.07 6.15 6.15 Total: -1.00 -33.22 408.16 -10.11 -43.33 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -7.13 Total: 0.98 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -3.68 Total: -16.63 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.35 Total: -38.60 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: -0.77 Total: -11.25 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.22 -10.11 -43.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595608982.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.575 kcal (2) G-P(sol) polarization free energy of solvation -33.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds