Wall clock time and date at job start Wed Apr 1 2020 03:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.50703 * 109.47303 * 316.31486 * 3 2 1 5 5 C 1.38271 * 119.94563 * 89.99582 * 4 3 2 6 6 C 1.38144 * 120.05325 * 179.97438 * 5 4 3 7 7 C 1.38722 * 119.94814 * 0.02562 * 6 5 4 8 8 O 1.35898 * 120.05841 * 180.02562 * 7 6 5 9 9 C 1.42898 * 117.00299 * 179.97438 * 8 7 6 10 10 C 1.53006 * 109.47348 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.46819 * 305.00516 * 10 9 8 12 12 O 1.42896 * 109.46760 * 65.00085 * 10 9 8 13 13 C 1.53000 * 109.47136 * 185.00237 * 10 9 8 14 14 N 1.46901 * 109.47038 * 179.74279 * 13 10 9 15 15 C 1.46841 * 111.00106 * 294.03308 * 14 13 10 16 16 C 1.53039 * 109.52725 * 174.15729 * 15 14 13 17 17 C 1.53118 * 109.27298 * 59.18050 * 16 15 14 18 18 C 1.53125 * 109.16273 * 302.34639 * 17 16 15 19 19 H 1.09005 * 109.49740 * 297.71730 * 18 17 16 20 20 C 1.50694 * 109.50332 * 177.59956 * 18 17 16 21 21 H 1.08011 * 119.99948 * 239.99852 * 20 18 17 22 22 C 1.37875 * 120.00519 * 60.00133 * 20 18 17 23 23 N 1.31513 * 119.99525 * 359.97438 * 22 20 18 24 24 Si 1.86794 * 120.00215 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47436 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47084 * 119.99634 * 24 22 20 27 27 H 1.48502 * 109.47245 * 239.99801 * 24 22 20 28 28 C 1.46843 * 110.99865 * 169.82164 * 14 13 10 29 29 C 1.38731 * 119.88945 * 0.26817 * 7 6 5 30 30 C 1.38150 * 119.94282 * 359.47535 * 29 7 6 31 31 H 1.09002 * 109.47234 * 196.31306 * 3 2 1 32 32 H 1.09005 * 109.47499 * 76.31109 * 3 2 1 33 33 H 1.08002 * 119.96913 * 0.03064 * 5 4 3 34 34 H 1.08003 * 120.02081 * 179.97438 * 6 5 4 35 35 H 1.09008 * 109.47099 * 59.99900 * 9 8 7 36 36 H 1.08997 * 109.47479 * 299.99870 * 9 8 7 37 37 H 0.96698 * 114.00284 * 60.00610 * 12 10 9 38 38 H 1.08999 * 109.47367 * 59.74485 * 13 10 9 39 39 H 1.09002 * 109.46921 * 299.74238 * 13 10 9 40 40 H 1.09005 * 109.46181 * 294.18070 * 15 14 13 41 41 H 1.09004 * 109.46077 * 54.15367 * 15 14 13 42 42 H 1.08998 * 109.50388 * 179.11626 * 16 15 14 43 43 H 1.08992 * 109.50297 * 299.24021 * 16 15 14 44 44 H 1.09002 * 109.52650 * 62.24797 * 17 16 15 45 45 H 1.08996 * 109.52285 * 182.38114 * 17 16 15 46 46 H 0.97009 * 119.99837 * 180.02562 * 23 22 20 47 47 H 1.09000 * 109.46229 * 305.85204 * 28 14 13 48 48 H 1.09001 * 109.46537 * 65.82566 * 28 14 13 49 49 H 1.08005 * 120.03209 * 179.72597 * 29 7 6 50 50 H 1.08001 * 119.97245 * 180.27239 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1108 -1.0266 0.9814 5 6 3.3414 -2.3246 0.5644 6 6 3.8028 -3.2679 1.4620 7 6 4.0344 -2.9122 2.7827 8 8 4.4888 -3.8382 3.6674 9 6 4.7054 -3.4008 5.0105 10 6 5.2121 -4.5731 5.8532 11 1 4.5132 -5.4058 5.7746 12 8 6.4959 -4.9821 5.3771 13 6 5.3253 -4.1384 7.3158 14 7 5.8059 -5.2657 8.1258 15 6 4.8166 -6.3505 8.1576 16 6 5.4074 -7.5604 8.8849 17 6 5.7933 -7.1546 10.3100 18 6 6.7873 -5.9914 10.2496 19 1 7.6947 -6.3144 9.7392 20 6 7.1273 -5.5470 11.6488 21 1 6.9177 -4.5340 11.9596 22 6 7.7058 -6.4333 12.5324 23 7 7.9605 -7.6668 12.1542 24 14 8.1278 -5.8820 14.2666 25 1 7.7433 -4.4583 14.4408 26 1 7.3870 -6.7176 15.2456 27 1 9.5879 -6.0322 14.4922 28 6 6.1565 -4.8270 9.4826 29 6 3.7964 -1.6107 3.2000 30 6 3.3400 -0.6697 2.2973 31 1 2.9709 0.9871 0.2887 32 1 2.9715 -0.2424 -0.9985 33 1 3.1614 -2.6009 -0.4640 34 1 3.9824 -4.2817 1.1359 35 1 3.7686 -3.0318 5.4280 36 1 5.4461 -2.6012 5.0173 37 1 7.1694 -4.2895 5.4177 38 1 4.3469 -3.8221 7.6776 39 1 6.0276 -3.3086 7.3949 40 1 3.9231 -6.0119 8.6822 41 1 4.5541 -6.6325 7.1379 42 1 4.6672 -8.3598 8.9221 43 1 6.2929 -7.9080 8.3531 44 1 4.9016 -6.8436 10.8544 45 1 6.2533 -8.0020 10.8182 46 1 8.3673 -8.2906 12.7759 47 1 6.8671 -4.0025 9.4254 48 1 5.2568 -4.4956 10.0011 49 1 3.9717 -1.3323 4.2287 50 1 3.1589 0.3448 2.6207 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595608982.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:34 Heat of formation + Delta-G solvation = -63.637091 kcal Electronic energy + Delta-G solvation = -28801.628420 eV Core-core repulsion = 24792.759519 eV Total energy + Delta-G solvation = -4008.868902 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.22351 -40.13403 -39.06769 -37.82659 -37.22901 -35.41400 -33.57320 -33.23458 -32.01315 -31.75599 -31.01394 -28.20492 -26.97304 -26.78681 -24.39265 -23.45112 -23.31716 -22.38165 -21.94407 -20.36393 -19.21126 -18.60318 -18.38549 -17.78126 -17.48952 -16.78027 -16.55692 -16.41485 -16.26009 -15.95522 -15.63726 -15.37617 -15.04886 -14.95570 -14.79066 -14.44394 -14.32025 -14.25741 -14.07402 -14.00752 -13.86639 -13.58567 -13.32489 -13.14522 -12.87003 -12.71545 -12.56658 -12.49480 -12.42171 -12.26914 -12.02014 -11.87812 -11.76120 -11.73176 -11.60596 -11.36600 -11.06836 -10.74619 -10.64834 -10.36642 -9.91673 -9.09998 -9.07774 -8.07085 -6.21567 0.38524 0.44169 1.40775 1.42541 1.53535 1.85761 1.89241 2.07922 2.43611 2.72889 3.07785 3.20082 3.39342 3.56471 3.75249 3.85334 3.94241 3.96528 4.02211 4.07365 4.19750 4.23275 4.31360 4.37978 4.42383 4.46306 4.47181 4.62233 4.65977 4.71320 4.72374 4.83443 4.88703 4.90385 4.97526 5.03194 5.10206 5.14240 5.18944 5.32306 5.40016 5.43854 5.52599 5.62693 5.64340 5.86203 5.96742 6.12193 6.21626 6.32515 6.46030 6.47778 6.68482 6.91975 6.93380 7.46658 8.97702 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.027247 B = 0.001609 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.404825 B =17401.031478 C =17772.297101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C 0.237 3.763 3 C 0.028 3.972 4 C -0.136 4.136 5 C -0.066 4.066 6 C -0.173 4.173 7 C 0.115 3.885 8 O -0.325 6.325 9 C 0.034 3.966 10 C 0.122 3.878 11 H 0.093 0.907 12 O -0.559 6.559 13 C 0.029 3.971 14 N -0.539 5.539 15 C 0.065 3.935 16 C -0.111 4.111 17 C -0.103 4.103 18 C 0.051 3.949 19 H -0.005 1.005 20 C -0.534 4.534 21 H 0.054 0.946 22 C 0.013 3.987 23 N -0.916 5.916 24 Si 0.955 3.045 25 H -0.266 1.266 26 H -0.282 1.282 27 H -0.281 1.281 28 C 0.083 3.917 29 C -0.221 4.221 30 C -0.068 4.068 31 H 0.151 0.849 32 H 0.152 0.848 33 H 0.156 0.844 34 H 0.129 0.871 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.384 0.616 38 H 0.051 0.949 39 H 0.092 0.908 40 H 0.029 0.971 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.046 0.954 44 H 0.023 0.977 45 H 0.056 0.944 46 H 0.259 0.741 47 H 0.062 0.938 48 H 0.017 0.983 49 H 0.139 0.861 50 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.754 16.197 -24.511 30.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.188 5.188 2 C -0.079 4.079 3 C -0.011 4.011 4 C -0.138 4.138 5 C -0.083 4.083 6 C -0.191 4.191 7 C 0.069 3.931 8 O -0.239 6.239 9 C -0.042 4.042 10 C 0.062 3.938 11 H 0.111 0.889 12 O -0.365 6.365 13 C -0.099 4.099 14 N -0.264 5.264 15 C -0.062 4.062 16 C -0.149 4.149 17 C -0.142 4.142 18 C 0.032 3.968 19 H 0.013 0.987 20 C -0.573 4.573 21 H 0.072 0.928 22 C -0.186 4.186 23 N -0.556 5.556 24 Si 0.781 3.219 25 H -0.190 1.190 26 H -0.208 1.208 27 H -0.207 1.207 28 C -0.044 4.044 29 C -0.239 4.239 30 C -0.086 4.086 31 H 0.169 0.831 32 H 0.170 0.830 33 H 0.174 0.826 34 H 0.147 0.853 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.232 0.768 38 H 0.070 0.930 39 H 0.110 0.890 40 H 0.047 0.953 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.065 0.935 44 H 0.042 0.958 45 H 0.074 0.926 46 H 0.069 0.931 47 H 0.080 0.920 48 H 0.035 0.965 49 H 0.157 0.843 50 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.231 15.102 -24.785 30.456 hybrid contribution 0.304 0.550 2.077 2.170 sum -8.927 15.652 -22.708 28.989 Atomic orbital electron populations 1.81291 1.15496 1.10991 1.11027 1.29881 0.95763 0.91126 0.91128 1.18450 0.78560 1.01656 1.02434 1.19548 1.04725 0.94801 0.94730 1.21203 0.95220 0.91678 1.00248 1.20669 1.05908 1.01641 0.90922 1.19446 0.94468 0.88778 0.90373 1.86113 1.80396 1.37226 1.20187 1.23584 1.02380 0.98119 0.80068 1.21796 0.85939 0.96168 0.89857 0.88919 1.86629 1.20163 1.43336 1.86357 1.22699 1.00419 0.93942 0.92888 1.61767 1.42202 1.09167 1.13215 1.22045 0.92293 0.91952 0.99929 1.21570 0.99888 0.97093 0.96342 1.21460 0.97295 1.00805 0.94595 1.18597 0.93283 0.91862 0.93035 0.98665 1.21563 1.40156 0.97395 0.98194 0.92790 1.25738 0.95536 0.95004 1.02330 1.70059 1.43778 1.05251 1.36493 0.85558 0.77731 0.78580 0.80067 1.18978 1.20808 1.20714 1.21980 0.97646 0.97955 0.86803 1.21484 1.07725 0.92720 1.01995 1.21222 0.95083 1.00100 0.92151 0.83098 0.83020 0.82625 0.85305 0.89859 0.89588 0.76784 0.93046 0.88983 0.95320 0.90024 0.91523 0.93496 0.95828 0.92559 0.93144 0.91961 0.96473 0.84334 0.83036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -10.26 18.54 20.01 0.37 -9.89 16 2 C 0.24 2.62 15.41 89.44 1.38 4.00 16 3 C 0.03 0.02 5.83 28.04 0.16 0.19 16 4 C -0.14 -1.00 5.09 -19.85 -0.10 -1.10 16 5 C -0.07 -0.63 9.69 22.26 0.22 -0.42 16 6 C -0.17 -2.69 9.99 22.36 0.22 -2.47 16 7 C 0.11 2.06 6.69 22.50 0.15 2.21 16 8 O -0.33 -6.96 10.10 -87.77 -0.89 -7.85 16 9 C 0.03 0.57 4.37 71.98 0.31 0.89 16 10 C 0.12 2.71 3.13 30.60 0.10 2.80 16 11 H 0.09 2.30 6.42 -2.39 -0.02 2.28 16 12 O -0.56 -14.60 13.17 -144.34 -1.90 -16.50 16 13 C 0.03 0.69 4.62 86.30 0.40 1.09 16 14 N -0.54 -18.44 4.53 -896.36 -4.06 -22.49 16 15 C 0.07 2.20 5.29 86.33 0.46 2.65 16 16 C -0.11 -4.40 6.09 30.65 0.19 -4.22 16 17 C -0.10 -5.01 5.02 30.68 0.15 -4.86 16 18 C 0.05 2.60 2.26 -11.49 -0.03 2.57 16 19 H 0.00 -0.28 8.14 -2.38 -0.02 -0.30 16 20 C -0.53 -29.48 8.56 25.60 0.22 -29.26 16 21 H 0.05 2.89 7.74 -2.90 -0.02 2.87 16 22 C 0.01 0.70 5.30 84.65 0.45 1.15 16 23 N -0.92 -53.65 11.35 21.45 0.24 -53.41 16 24 Si 0.95 43.60 29.54 68.60 2.03 45.63 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 26 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 27 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 28 C 0.08 3.40 4.68 86.33 0.40 3.80 16 29 C -0.22 -2.98 9.04 22.37 0.20 -2.78 16 30 C -0.07 -0.62 9.69 22.26 0.22 -0.40 16 31 H 0.15 -0.75 8.08 -2.39 -0.02 -0.77 16 32 H 0.15 -0.77 8.08 -2.38 -0.02 -0.79 16 33 H 0.16 0.65 8.06 -2.91 -0.02 0.63 16 34 H 0.13 1.99 8.06 -2.91 -0.02 1.97 16 35 H 0.08 1.15 7.65 -2.38 -0.02 1.13 16 36 H 0.09 1.10 7.67 -2.39 -0.02 1.08 16 37 H 0.38 7.38 9.05 -74.06 -0.67 6.71 16 38 H 0.05 1.12 8.12 -2.39 -0.02 1.10 16 39 H 0.09 1.94 7.98 -2.39 -0.02 1.92 16 40 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 41 H 0.08 2.42 6.22 -2.38 -0.01 2.41 16 42 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.06 3.11 6.15 -2.39 -0.01 3.09 16 46 H 0.26 14.43 8.31 -92.70 -0.77 13.66 16 47 H 0.06 2.45 8.01 -2.39 -0.02 2.43 16 48 H 0.02 0.69 8.14 -2.39 -0.02 0.68 16 49 H 0.14 1.51 6.30 -2.91 -0.02 1.49 16 50 H 0.15 0.59 8.06 -2.91 -0.02 0.57 16 Total: -1.00 -76.22 408.16 1.17 -75.05 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 0.28 Total: 13.62 kcal Atomic # 6 Polarization: -29.25 SS G_CDS: 5.10 Total: -24.15 kcal Atomic # 7 Polarization: -82.35 SS G_CDS: -3.44 Total: -85.80 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -2.79 Total: -24.35 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -76.22 1.17 -75.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595608982.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.410 kcal (2) G-P(sol) polarization free energy of solvation -76.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds