Wall clock time and date at job start Wed Apr 1 2020 02:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99869 * 2 1 4 4 H 1.48503 * 109.47332 * 239.99826 * 3 2 1 5 5 H 1.48504 * 109.47358 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47181 * 119.99882 * 3 2 1 7 7 C 1.37871 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00231 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.50570 * 60.07960 * 9 7 2 11 11 C 1.53127 * 109.50246 * 300.00305 * 9 7 2 12 12 C 1.53117 * 109.15989 * 182.40233 * 11 9 7 13 13 C 1.53044 * 109.27792 * 57.65607 * 12 11 9 14 14 N 1.46847 * 109.51335 * 300.82256 * 13 12 11 15 15 C 1.46901 * 111.00144 * 185.83239 * 14 13 12 16 16 C 1.50704 * 109.46920 * 66.04700 * 15 14 13 17 17 O 1.21280 * 119.99958 * 0.02562 * 16 15 14 18 18 N 1.34776 * 120.00066 * 179.97438 * 16 15 14 19 19 C 1.46493 * 119.99878 * 180.02562 * 18 16 15 20 20 H 1.08997 * 109.43832 * 324.91108 * 19 18 16 21 21 C 1.53078 * 109.43456 * 204.99905 * 19 18 16 22 22 C 1.53410 * 108.29084 * 191.74753 * 21 19 18 23 23 O 1.42823 * 108.37515 * 64.74651 * 22 21 19 24 24 C 1.35852 * 117.85823 * 310.85152 * 23 22 21 25 25 C 1.39146 * 118.49409 * 197.01608 * 24 23 22 26 26 C 1.37968 * 120.21097 * 180.17792 * 25 24 23 27 27 C 1.38284 * 119.96214 * 0.02562 * 26 25 24 28 28 C 1.38106 * 119.98241 * 359.91426 * 27 26 25 29 29 C 1.38367 * 121.80948 * 17.07700 * 24 23 22 30 30 C 1.46830 * 111.21086 * 61.74856 * 14 13 12 31 31 H 0.97003 * 120.00052 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.52581 * 62.49867 * 11 9 7 33 33 H 1.09004 * 109.51868 * 302.30503 * 11 9 7 34 34 H 1.09001 * 109.50874 * 297.71787 * 12 11 9 35 35 H 1.09000 * 109.50461 * 177.59307 * 12 11 9 36 36 H 1.09002 * 109.46396 * 60.83566 * 13 12 11 37 37 H 1.08994 * 109.46485 * 180.81491 * 13 12 11 38 38 H 1.08999 * 109.47329 * 186.04739 * 15 14 13 39 39 H 1.08996 * 109.46902 * 306.05049 * 15 14 13 40 40 H 0.96998 * 119.99404 * 0.02562 * 18 16 15 41 41 H 1.08995 * 109.69947 * 311.44549 * 21 19 18 42 42 H 1.09005 * 109.69774 * 72.04881 * 21 19 18 43 43 H 1.08997 * 109.68410 * 184.47097 * 22 21 19 44 44 H 1.09003 * 109.68532 * 304.98646 * 22 21 19 45 45 H 1.07998 * 119.89835 * 0.21198 * 25 24 23 46 46 H 1.08005 * 120.02076 * 180.02562 * 26 25 24 47 47 H 1.08009 * 120.01083 * 179.89892 * 27 26 25 48 48 H 1.07995 * 119.84153 * 180.02562 * 28 27 26 49 49 H 1.08995 * 109.46742 * 178.23410 * 30 14 13 50 50 H 1.09004 * 109.45381 * 58.25744 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6249 -2.5578 -0.8908 11 6 0.3709 -2.5812 1.2498 12 6 -0.3448 -3.9346 1.2725 13 6 0.6953 -5.0568 1.2400 14 7 1.5111 -4.9345 0.0251 15 6 2.4288 -6.0736 -0.1098 16 6 1.6347 -7.3342 -0.3366 17 8 0.4236 -7.2881 -0.3820 18 7 2.2703 -8.5127 -0.4902 19 6 1.4984 -9.7379 -0.7112 20 1 0.5683 -9.6878 -0.1451 21 6 2.3147 -10.9456 -0.2438 22 6 1.6240 -12.2186 -0.7496 23 8 1.6735 -12.2208 -2.1770 24 6 1.2839 -11.0936 -2.8275 25 6 0.9806 -11.1805 -4.1827 26 6 0.5848 -10.0570 -4.8789 27 6 0.4892 -8.8400 -4.2293 28 6 0.7882 -8.7504 -2.8840 29 6 1.1844 -9.8751 -2.1795 30 6 2.2449 -3.6629 0.0038 31 1 -0.4850 0.8401 -0.0004 32 1 -0.3670 -1.7793 1.2291 33 1 0.9924 -2.4828 2.1398 34 1 -0.9959 -4.0168 0.4022 35 1 -0.9399 -4.0164 2.1820 36 1 1.3374 -4.9825 2.1177 37 1 0.1886 -6.0219 1.2415 38 1 3.0941 -5.9060 -0.9567 39 1 3.0186 -6.1748 0.8012 40 1 3.2390 -8.5494 -0.4543 41 1 3.3234 -10.8877 -0.6526 42 1 2.3592 -10.9596 0.8453 43 1 2.1424 -13.0959 -0.3628 44 1 0.5858 -12.2297 -0.4176 45 1 1.0548 -12.1304 -4.6911 46 1 0.3497 -10.1280 -5.9307 47 1 0.1809 -7.9597 -4.7740 48 1 0.7123 -7.7989 -2.3789 49 1 2.8636 -3.6155 -0.8923 50 1 2.8796 -3.5951 0.8874 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595615287.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:40 Heat of formation + Delta-G solvation = -42.585402 kcal Electronic energy + Delta-G solvation = -30504.111327 eV Core-core repulsion = 26496.155295 eV Total energy + Delta-G solvation = -4007.956032 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.21500 -39.67982 -37.81177 -37.60028 -35.66947 -33.65404 -32.41149 -31.60376 -30.78184 -30.29747 -29.81480 -27.38911 -25.20847 -24.89764 -23.92945 -22.61848 -22.02412 -21.44957 -20.54970 -20.21802 -18.59212 -18.04615 -17.21465 -16.70526 -16.65211 -16.37284 -15.89636 -15.34982 -15.10911 -14.89592 -14.49293 -14.39141 -14.13011 -13.91089 -13.76308 -13.42671 -13.40804 -13.08233 -12.77981 -12.65357 -12.38640 -12.25717 -12.12505 -11.78971 -11.61718 -11.49319 -11.29811 -11.12432 -10.91983 -10.87627 -10.70199 -10.63205 -10.08837 -9.82272 -9.77156 -9.41058 -9.28151 -8.94567 -8.92260 -8.67249 -8.34475 -8.26620 -7.67203 -5.94587 -4.01407 1.13947 1.31260 2.66989 2.88846 3.05287 3.33197 3.38290 3.40100 3.67407 4.16465 4.31554 4.38481 4.41868 4.56969 4.66755 4.70963 4.92148 4.95375 5.07885 5.13596 5.27438 5.29542 5.35111 5.37455 5.39132 5.45012 5.58006 5.60907 5.83936 5.89622 5.90395 6.14082 6.15813 6.22713 6.33768 6.38833 6.41285 6.50920 6.55586 6.63105 6.78780 6.84612 6.97895 7.20922 7.27436 7.30246 7.45982 7.67500 7.76148 7.81412 8.11571 8.20914 8.26984 8.49946 9.02506 9.62638 11.11214 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020004 B = 0.002306 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.349666 B =12137.588267 C =12752.441807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.516 4.516 8 H 0.053 0.947 9 C 0.056 3.944 10 H 0.035 0.965 11 C -0.111 4.111 12 C -0.114 4.114 13 C 0.060 3.940 14 N -0.520 5.520 15 C 0.036 3.964 16 C 0.515 3.485 17 O -0.509 6.509 18 N -0.730 5.730 19 C 0.193 3.807 20 H 0.100 0.900 21 C -0.166 4.166 22 C 0.067 3.933 23 O -0.318 6.318 24 C 0.134 3.866 25 C -0.157 4.157 26 C -0.084 4.084 27 C -0.154 4.154 28 C -0.065 4.065 29 C -0.177 4.177 30 C 0.068 3.932 31 H 0.260 0.740 32 H 0.090 0.910 33 H 0.028 0.972 34 H 0.062 0.938 35 H 0.044 0.956 36 H 0.016 0.984 37 H 0.075 0.925 38 H 0.100 0.900 39 H 0.056 0.944 40 H 0.400 0.600 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.112 0.888 44 H 0.068 0.932 45 H 0.128 0.872 46 H 0.127 0.873 47 H 0.125 0.875 48 H 0.139 0.861 49 H 0.060 0.940 50 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.996 -25.277 -2.202 25.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.555 4.555 8 H 0.071 0.929 9 C 0.038 3.962 10 H 0.053 0.947 11 C -0.149 4.149 12 C -0.152 4.152 13 C -0.068 4.068 14 N -0.245 5.245 15 C -0.096 4.096 16 C 0.302 3.698 17 O -0.383 6.383 18 N -0.384 5.384 19 C 0.088 3.912 20 H 0.117 0.883 21 C -0.204 4.204 22 C -0.009 4.009 23 O -0.232 6.232 24 C 0.088 3.912 25 C -0.176 4.176 26 C -0.102 4.102 27 C -0.172 4.172 28 C -0.083 4.083 29 C -0.179 4.179 30 C -0.058 4.058 31 H 0.070 0.930 32 H 0.109 0.891 33 H 0.047 0.953 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.034 0.966 37 H 0.093 0.907 38 H 0.118 0.882 39 H 0.074 0.926 40 H 0.234 0.766 41 H 0.102 0.898 42 H 0.110 0.890 43 H 0.130 0.870 44 H 0.086 0.914 45 H 0.146 0.854 46 H 0.145 0.855 47 H 0.143 0.857 48 H 0.156 0.844 49 H 0.078 0.922 50 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 3.689 -25.257 -2.685 25.665 hybrid contribution 1.547 1.061 0.881 2.073 sum 5.236 -24.196 -1.803 24.821 Atomic orbital electron populations 1.69889 1.05832 1.26425 1.50424 1.24933 0.94818 0.98914 0.95151 0.86694 0.79606 0.83359 0.78499 1.20317 1.21327 1.20424 1.21093 0.92728 0.90672 1.50991 0.92920 1.18647 0.92555 0.89997 0.95043 0.94656 1.21670 1.00020 0.94941 0.98295 1.21626 0.97229 0.96092 1.00242 1.22179 0.95497 1.00331 0.88764 1.61742 1.22657 1.00803 1.39284 1.21955 0.95051 0.90315 1.02286 1.20912 0.88982 0.84482 0.75444 1.90699 1.13962 1.85772 1.47833 1.46096 1.10221 1.06654 1.75410 1.19555 0.95989 0.84014 0.91652 0.88257 1.22504 1.00516 0.94505 1.02896 1.22920 1.01272 0.98413 0.78313 1.85983 1.81955 1.34720 1.20569 1.18682 0.95713 0.84820 0.91958 1.20530 1.05212 0.99781 0.92087 1.20975 0.97516 0.92064 0.99661 1.21149 1.03051 0.98041 0.94950 1.21391 0.94084 0.98808 0.94053 1.20185 1.07742 0.93236 0.96786 1.22367 0.96536 0.88184 0.98726 0.92985 0.89128 0.95284 0.91947 0.93696 0.96621 0.90679 0.88179 0.92640 0.76563 0.89762 0.88988 0.87032 0.91420 0.85430 0.85507 0.85703 0.84367 0.92197 0.96188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.54 11.35 55.43 0.63 -24.91 16 2 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.12 8.56 -34.44 -0.29 -14.41 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 9 C 0.06 1.42 2.26 -91.69 -0.21 1.21 16 10 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 11 C -0.11 -2.69 5.02 -26.61 -0.13 -2.83 16 12 C -0.11 -2.38 6.09 -26.65 -0.16 -2.54 16 13 C 0.06 1.13 5.11 -3.83 -0.02 1.11 16 14 N -0.52 -9.73 4.39 -236.12 -1.04 -10.77 16 15 C 0.04 0.50 5.45 -4.97 -0.03 0.47 16 16 C 0.51 7.00 6.07 -10.98 -0.07 6.93 16 17 O -0.51 -8.82 12.25 5.56 0.07 -8.75 16 18 N -0.73 -7.23 4.86 -54.86 -0.27 -7.50 16 19 C 0.19 1.91 2.70 -69.01 -0.19 1.73 16 20 H 0.10 1.14 7.58 -51.93 -0.39 0.75 16 21 C -0.17 -1.08 5.67 -26.48 -0.15 -1.23 16 22 C 0.07 0.44 7.03 37.37 0.26 0.70 16 23 O -0.32 -3.14 10.27 -19.28 -0.20 -3.34 16 24 C 0.13 1.50 6.47 -39.20 -0.25 1.24 16 25 C -0.16 -1.65 9.94 -39.34 -0.39 -2.05 16 26 C -0.08 -0.86 10.04 -39.66 -0.40 -1.26 16 27 C -0.15 -1.83 10.04 -39.61 -0.40 -2.23 16 28 C -0.07 -0.87 9.07 -39.53 -0.36 -1.23 16 29 C -0.18 -2.09 5.56 -104.44 -0.58 -2.67 16 30 C 0.07 1.43 4.68 -3.84 -0.02 1.41 16 31 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.09 2.45 6.15 -51.93 -0.32 2.13 16 33 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 35 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 37 H 0.07 1.39 5.80 -51.93 -0.30 1.09 16 38 H 0.10 1.24 7.98 -51.93 -0.41 0.83 16 39 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 40 H 0.40 2.86 8.58 -40.82 -0.35 2.51 16 41 H 0.08 0.52 8.11 -51.93 -0.42 0.10 16 42 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.11 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 46 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 47 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 48 H 0.14 2.13 4.67 -52.49 -0.25 1.88 16 49 H 0.06 1.21 8.01 -51.93 -0.42 0.79 16 50 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 387.58 15.07 5.84 5.84 Total: -1.00 -32.06 387.58 -11.36 -43.43 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -7.90 Total: 3.74 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -3.48 Total: -13.97 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: -0.67 Total: -43.18 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: -0.13 Total: -12.09 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.06 -11.36 -43.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595615287.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.840 kcal (2) G-P(sol) polarization free energy of solvation -32.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds