Wall clock time and date at job start Wed Apr 1 2020 02:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99869 * 2 1 4 4 H 1.48503 * 109.47332 * 239.99826 * 3 2 1 5 5 H 1.48504 * 109.47358 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47181 * 119.99882 * 3 2 1 7 7 C 1.37871 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00231 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.50570 * 60.07960 * 9 7 2 11 11 C 1.53127 * 109.50246 * 300.00305 * 9 7 2 12 12 C 1.53117 * 109.15989 * 182.40233 * 11 9 7 13 13 C 1.53044 * 109.27792 * 57.65607 * 12 11 9 14 14 N 1.46847 * 109.51335 * 300.82256 * 13 12 11 15 15 C 1.46901 * 111.00144 * 185.83239 * 14 13 12 16 16 C 1.50704 * 109.46920 * 66.04700 * 15 14 13 17 17 O 1.21280 * 119.99958 * 0.02562 * 16 15 14 18 18 N 1.34776 * 120.00066 * 179.97438 * 16 15 14 19 19 C 1.46493 * 119.99878 * 180.02562 * 18 16 15 20 20 H 1.08997 * 109.43832 * 324.91108 * 19 18 16 21 21 C 1.53078 * 109.43456 * 204.99905 * 19 18 16 22 22 C 1.53410 * 108.29084 * 191.74753 * 21 19 18 23 23 O 1.42823 * 108.37515 * 64.74651 * 22 21 19 24 24 C 1.35852 * 117.85823 * 310.85152 * 23 22 21 25 25 C 1.39146 * 118.49409 * 197.01608 * 24 23 22 26 26 C 1.37968 * 120.21097 * 180.17792 * 25 24 23 27 27 C 1.38284 * 119.96214 * 0.02562 * 26 25 24 28 28 C 1.38106 * 119.98241 * 359.91426 * 27 26 25 29 29 C 1.38367 * 121.80948 * 17.07700 * 24 23 22 30 30 C 1.46830 * 111.21086 * 61.74856 * 14 13 12 31 31 H 0.97003 * 120.00052 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.52581 * 62.49867 * 11 9 7 33 33 H 1.09004 * 109.51868 * 302.30503 * 11 9 7 34 34 H 1.09001 * 109.50874 * 297.71787 * 12 11 9 35 35 H 1.09000 * 109.50461 * 177.59307 * 12 11 9 36 36 H 1.09002 * 109.46396 * 60.83566 * 13 12 11 37 37 H 1.08994 * 109.46485 * 180.81491 * 13 12 11 38 38 H 1.08999 * 109.47329 * 186.04739 * 15 14 13 39 39 H 1.08996 * 109.46902 * 306.05049 * 15 14 13 40 40 H 0.96998 * 119.99404 * 0.02562 * 18 16 15 41 41 H 1.08995 * 109.69947 * 311.44549 * 21 19 18 42 42 H 1.09005 * 109.69774 * 72.04881 * 21 19 18 43 43 H 1.08997 * 109.68410 * 184.47097 * 22 21 19 44 44 H 1.09003 * 109.68532 * 304.98646 * 22 21 19 45 45 H 1.07998 * 119.89835 * 0.21198 * 25 24 23 46 46 H 1.08005 * 120.02076 * 180.02562 * 26 25 24 47 47 H 1.08009 * 120.01083 * 179.89892 * 27 26 25 48 48 H 1.07995 * 119.84153 * 180.02562 * 28 27 26 49 49 H 1.08995 * 109.46742 * 178.23410 * 30 14 13 50 50 H 1.09004 * 109.45381 * 58.25744 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6249 -2.5578 -0.8908 11 6 0.3709 -2.5812 1.2498 12 6 -0.3448 -3.9346 1.2725 13 6 0.6953 -5.0568 1.2400 14 7 1.5111 -4.9345 0.0251 15 6 2.4288 -6.0736 -0.1098 16 6 1.6347 -7.3342 -0.3366 17 8 0.4236 -7.2881 -0.3820 18 7 2.2703 -8.5127 -0.4902 19 6 1.4984 -9.7379 -0.7112 20 1 0.5683 -9.6878 -0.1451 21 6 2.3147 -10.9456 -0.2438 22 6 1.6240 -12.2186 -0.7496 23 8 1.6735 -12.2208 -2.1770 24 6 1.2839 -11.0936 -2.8275 25 6 0.9806 -11.1805 -4.1827 26 6 0.5848 -10.0570 -4.8789 27 6 0.4892 -8.8400 -4.2293 28 6 0.7882 -8.7504 -2.8840 29 6 1.1844 -9.8751 -2.1795 30 6 2.2449 -3.6629 0.0038 31 1 -0.4850 0.8401 -0.0004 32 1 -0.3670 -1.7793 1.2291 33 1 0.9924 -2.4828 2.1398 34 1 -0.9959 -4.0168 0.4022 35 1 -0.9399 -4.0164 2.1820 36 1 1.3374 -4.9825 2.1177 37 1 0.1886 -6.0219 1.2415 38 1 3.0941 -5.9060 -0.9567 39 1 3.0186 -6.1748 0.8012 40 1 3.2390 -8.5494 -0.4543 41 1 3.3234 -10.8877 -0.6526 42 1 2.3592 -10.9596 0.8453 43 1 2.1424 -13.0959 -0.3628 44 1 0.5858 -12.2297 -0.4176 45 1 1.0548 -12.1304 -4.6911 46 1 0.3497 -10.1280 -5.9307 47 1 0.1809 -7.9597 -4.7740 48 1 0.7123 -7.7989 -2.3789 49 1 2.8636 -3.6155 -0.8923 50 1 2.8796 -3.5951 0.8874 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595615287.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:39 Heat of formation + Delta-G solvation = -63.259301 kcal Electronic energy + Delta-G solvation = -30505.007815 eV Core-core repulsion = 26496.155295 eV Total energy + Delta-G solvation = -4008.852520 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.02934 -40.77711 -39.28236 -38.40982 -36.61634 -35.46484 -33.69744 -32.93342 -31.67153 -31.53982 -31.13538 -28.62890 -26.90242 -26.05732 -24.67143 -23.83007 -23.33524 -23.11164 -21.52303 -21.05037 -20.37974 -18.84166 -18.47556 -18.08590 -17.58087 -17.43136 -16.95482 -16.58989 -16.37877 -16.10520 -15.90436 -15.44298 -15.24709 -15.10838 -14.84983 -14.66971 -14.42896 -14.28841 -14.14619 -14.07998 -13.81613 -13.45832 -13.28168 -12.95605 -12.82777 -12.77090 -12.54805 -12.52815 -12.40480 -12.23219 -11.81974 -11.75801 -11.73176 -11.62901 -11.45402 -11.10575 -10.67421 -10.63532 -10.35850 -10.15650 -9.80266 -9.16909 -9.11437 -8.05991 -6.21046 0.29530 0.43637 1.42832 1.44479 1.51958 1.62608 2.00491 2.35586 2.44682 2.81039 3.14290 3.20910 3.52457 3.61925 3.76122 3.81019 4.04112 4.16279 4.18822 4.20918 4.24705 4.31699 4.39039 4.40902 4.50712 4.51226 4.54520 4.60616 4.62995 4.67178 4.75736 4.87960 4.93355 4.96181 4.97082 5.05886 5.12623 5.18686 5.30465 5.37213 5.38894 5.51334 5.53014 5.63516 5.64602 5.81389 5.95372 6.11276 6.20567 6.21789 6.45417 6.45893 6.58677 6.92375 7.28745 7.47128 8.98693 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020004 B = 0.002306 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.349666 B =12137.588267 C =12752.441807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.011 3.989 3 Si 0.957 3.043 4 H -0.270 1.270 5 H -0.287 1.287 6 H -0.269 1.269 7 C -0.534 4.534 8 H 0.057 0.943 9 C 0.052 3.948 10 H -0.009 1.009 11 C -0.102 4.102 12 C -0.108 4.108 13 C 0.070 3.930 14 N -0.540 5.540 15 C 0.035 3.965 16 C 0.518 3.482 17 O -0.552 6.552 18 N -0.710 5.710 19 C 0.191 3.809 20 H 0.080 0.920 21 C -0.155 4.155 22 C 0.059 3.941 23 O -0.325 6.325 24 C 0.130 3.870 25 C -0.163 4.163 26 C -0.081 4.081 27 C -0.171 4.171 28 C -0.089 4.089 29 C -0.186 4.186 30 C 0.084 3.916 31 H 0.259 0.741 32 H 0.056 0.944 33 H 0.027 0.973 34 H 0.039 0.961 35 H 0.064 0.936 36 H 0.029 0.971 37 H 0.081 0.919 38 H 0.117 0.883 39 H 0.084 0.916 40 H 0.416 0.584 41 H 0.093 0.907 42 H 0.115 0.885 43 H 0.145 0.855 44 H 0.068 0.932 45 H 0.148 0.852 46 H 0.154 0.846 47 H 0.125 0.875 48 H 0.113 0.887 49 H 0.065 0.935 50 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.393 -27.614 -1.686 28.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.188 4.188 3 Si 0.782 3.218 4 H -0.195 1.195 5 H -0.213 1.213 6 H -0.194 1.194 7 C -0.572 4.572 8 H 0.076 0.924 9 C 0.034 3.966 10 H 0.009 0.991 11 C -0.141 4.141 12 C -0.146 4.146 13 C -0.058 4.058 14 N -0.265 5.265 15 C -0.096 4.096 16 C 0.306 3.694 17 O -0.430 6.430 18 N -0.363 5.363 19 C 0.086 3.914 20 H 0.098 0.902 21 C -0.193 4.193 22 C -0.016 4.016 23 O -0.239 6.239 24 C 0.084 3.916 25 C -0.181 4.181 26 C -0.099 4.099 27 C -0.189 4.189 28 C -0.108 4.108 29 C -0.188 4.188 30 C -0.043 4.043 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.046 0.954 34 H 0.058 0.942 35 H 0.082 0.918 36 H 0.047 0.953 37 H 0.099 0.901 38 H 0.135 0.865 39 H 0.102 0.898 40 H 0.254 0.746 41 H 0.112 0.888 42 H 0.133 0.867 43 H 0.162 0.838 44 H 0.086 0.914 45 H 0.165 0.835 46 H 0.171 0.829 47 H 0.143 0.857 48 H 0.131 0.869 49 H 0.083 0.917 50 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 6.139 -27.637 -2.165 28.394 hybrid contribution 0.769 1.702 0.680 1.987 sum 6.908 -25.936 -1.485 26.881 Atomic orbital electron populations 1.70059 1.07383 1.27102 1.51248 1.25777 0.95621 1.02540 0.94831 0.85640 0.78331 0.78915 0.78915 1.19521 1.21272 1.19431 1.21494 0.93153 0.91870 1.50730 0.92430 1.18576 0.93024 0.91611 0.93434 0.99110 1.21469 0.99156 0.95733 0.97709 1.21534 0.97624 0.95275 1.00176 1.22041 0.95079 0.99267 0.89366 1.61555 1.23969 1.01453 1.39539 1.22044 0.94539 0.88626 1.04343 1.20816 0.88308 0.85265 0.75049 1.90690 1.15774 1.86392 1.50097 1.45861 1.11040 1.05738 1.73708 1.19641 0.96049 0.85113 0.90555 0.90168 1.22488 1.00074 0.92450 1.04280 1.23256 1.01989 0.99720 0.76641 1.85983 1.81615 1.33948 1.22373 1.18820 0.95338 0.84987 0.92446 1.20876 1.04470 1.00631 0.92128 1.21251 0.96530 0.91184 1.00900 1.21297 1.03703 0.99097 0.94784 1.21314 0.96096 0.98501 0.94855 1.20317 1.07794 0.93092 0.97628 1.22019 0.95223 0.87848 0.99250 0.93153 0.92565 0.95394 0.94210 0.91755 0.95320 0.90077 0.86458 0.89793 0.74618 0.88809 0.86681 0.83778 0.91361 0.83458 0.82852 0.85655 0.86915 0.91654 0.95518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.77 11.35 21.45 0.24 -54.53 16 2 C 0.01 0.61 5.30 84.65 0.45 1.06 16 3 Si 0.96 43.97 29.54 68.60 2.03 46.00 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 7 C -0.53 -29.71 8.56 25.60 0.22 -29.49 16 8 H 0.06 3.07 7.74 -2.91 -0.02 3.04 16 9 C 0.05 2.73 2.26 -11.49 -0.03 2.71 16 10 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 11 C -0.10 -5.13 5.02 30.68 0.15 -4.97 16 12 C -0.11 -4.62 6.09 30.65 0.19 -4.44 16 13 C 0.07 2.59 5.11 86.33 0.44 3.04 16 14 N -0.54 -20.03 4.39 -900.96 -3.96 -23.99 16 15 C 0.04 0.92 5.45 85.56 0.47 1.39 16 16 C 0.52 13.69 6.07 87.66 0.53 14.22 16 17 O -0.55 -19.48 12.25 -3.03 -0.04 -19.52 16 18 N -0.71 -12.92 4.86 -445.88 -2.17 -15.09 16 19 C 0.19 3.56 2.70 44.30 0.12 3.68 16 20 H 0.08 1.83 7.58 -2.39 -0.02 1.81 16 21 C -0.16 -1.55 5.67 30.76 0.17 -1.38 16 22 C 0.06 0.60 7.03 72.12 0.51 1.11 16 23 O -0.32 -5.65 10.27 -91.89 -0.94 -6.59 16 24 C 0.13 2.73 6.47 22.52 0.15 2.87 16 25 C -0.16 -3.15 9.94 22.42 0.22 -2.93 16 26 C -0.08 -1.57 10.04 22.22 0.22 -1.35 16 27 C -0.17 -4.14 10.04 22.25 0.22 -3.92 16 28 C -0.09 -2.45 9.07 22.30 0.20 -2.24 16 29 C -0.19 -4.29 5.56 -19.75 -0.11 -4.40 16 30 C 0.08 3.48 4.68 86.33 0.40 3.88 16 31 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 32 H 0.06 3.19 6.15 -2.39 -0.01 3.17 16 33 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 34 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.08 2.97 5.80 -2.39 -0.01 2.95 16 38 H 0.12 2.67 7.98 -2.39 -0.02 2.65 16 39 H 0.08 1.78 8.12 -2.39 -0.02 1.76 16 40 H 0.42 4.82 8.58 -92.71 -0.80 4.02 16 41 H 0.09 0.81 8.11 -2.39 -0.02 0.79 16 42 H 0.11 0.67 8.14 -2.38 -0.02 0.65 16 43 H 0.14 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 46 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 47 H 0.13 2.87 8.06 -2.91 -0.02 2.84 16 48 H 0.11 3.67 4.67 -2.91 -0.01 3.66 16 49 H 0.07 2.61 8.01 -2.39 -0.02 2.59 16 50 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -73.17 387.58 -0.15 -73.32 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: 0.15 Total: 21.55 kcal Atomic # 6 Polarization: -25.69 SS G_CDS: 4.53 Total: -21.15 kcal Atomic # 7 Polarization: -87.72 SS G_CDS: -5.88 Total: -93.61 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.98 Total: -26.11 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -73.17 -0.15 -73.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595615287.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.065 kcal (2) G-P(sol) polarization free energy of solvation -73.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds