Wall clock time and date at job start Wed Apr 1 2020 02:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00017 * 2 1 4 4 H 1.48505 * 109.47120 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47166 * 300.00019 * 3 2 1 6 6 H 1.48504 * 109.46989 * 59.99835 * 3 2 1 7 7 C 1.37883 * 119.99947 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99780 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99951 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.53671 * 300.09730 * 9 7 2 11 11 C 1.53121 * 109.50298 * 60.19331 * 9 7 2 12 12 C 1.53127 * 109.15629 * 177.59524 * 11 9 7 13 13 C 1.53035 * 109.28026 * 302.34328 * 12 11 9 14 14 N 1.46856 * 109.52160 * 59.18132 * 13 12 11 15 15 C 1.46891 * 111.00080 * 174.15802 * 14 13 12 16 16 C 1.53000 * 109.47460 * 294.21438 * 15 14 13 17 17 C 1.50695 * 109.47352 * 180.02562 * 16 15 14 18 18 O 1.21299 * 120.00328 * 5.42768 * 17 16 15 19 19 N 1.34778 * 120.00313 * 185.43071 * 17 16 15 20 20 C 1.47306 * 121.15771 * 354.19535 * 19 17 16 21 21 C 1.53532 * 107.57941 * 221.97408 * 20 19 17 22 22 O 1.42962 * 108.80805 * 301.80256 * 21 20 19 23 23 C 1.35900 * 117.76920 * 49.47878 * 22 21 20 24 24 C 1.38702 * 119.66361 * 159.86597 * 23 22 21 25 25 C 1.38205 * 120.05226 * 179.79793 * 24 23 22 26 26 C 1.38280 * 120.29360 * 359.95319 * 25 24 23 27 27 C 1.38253 * 120.06155 * 0.06362 * 26 25 24 28 28 C 1.38576 * 119.87837 * 0.02562 * 27 26 25 29 29 C 1.46845 * 111.19745 * 298.25900 * 14 13 12 30 30 H 0.96998 * 120.00191 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.52114 * 297.49713 * 11 9 7 32 32 H 1.09002 * 109.52030 * 57.62775 * 11 9 7 33 33 H 1.08995 * 109.50503 * 62.29058 * 12 11 9 34 34 H 1.08996 * 109.49787 * 182.36752 * 12 11 9 35 35 H 1.09000 * 109.46709 * 299.17180 * 13 12 11 36 36 H 1.08999 * 109.46372 * 179.19776 * 13 12 11 37 37 H 1.08999 * 109.47406 * 174.20980 * 15 14 13 38 38 H 1.09000 * 109.46926 * 54.21186 * 15 14 13 39 39 H 1.08999 * 109.47185 * 59.99406 * 16 15 14 40 40 H 1.09000 * 109.46845 * 299.99798 * 16 15 14 41 41 H 1.08989 * 109.84075 * 102.44902 * 20 19 17 42 42 H 1.09000 * 109.88719 * 341.51660 * 20 19 17 43 43 H 1.09003 * 109.58164 * 182.00809 * 21 20 19 44 44 H 1.09005 * 109.58557 * 61.60112 * 21 20 19 45 45 H 1.07999 * 119.97182 * 359.52280 * 24 23 22 46 46 H 1.08003 * 119.85183 * 179.97438 * 25 24 23 47 47 H 1.08000 * 119.96764 * 180.02562 * 26 25 24 48 48 H 1.08002 * 120.06101 * 179.97438 * 27 26 25 49 49 H 1.09007 * 109.46258 * 181.75610 * 29 14 13 50 50 H 1.08996 * 109.46376 * 301.73200 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6223 -2.5571 0.8890 11 6 0.3745 -2.5834 -1.2522 12 6 -0.3411 -3.9370 -1.2747 13 6 0.6989 -5.0591 -1.2372 14 7 1.5112 -4.9348 -0.0201 15 6 2.4281 -6.0739 0.1194 16 6 1.6208 -7.3542 0.3430 17 6 2.5616 -8.5226 0.4867 18 8 3.7599 -8.3366 0.5159 19 7 2.0716 -9.7745 0.5828 20 6 0.6223 -10.0205 0.6776 21 6 0.4058 -11.1157 1.7316 22 8 1.1280 -12.2846 1.3368 23 6 2.4309 -12.1339 0.9811 24 6 3.2785 -13.2317 0.9980 25 6 4.6040 -13.0884 0.6338 26 6 5.0923 -11.8529 0.2502 27 6 4.2550 -10.7529 0.2306 28 6 2.9256 -10.8907 0.5966 29 6 2.2448 -3.6629 0.0011 30 1 -0.4850 0.8400 -0.0004 31 1 -0.3635 -1.7814 -1.2350 32 1 0.9985 -2.4854 -2.1405 33 1 -0.9948 -4.0175 -0.4063 34 1 -0.9340 -4.0200 -2.1855 35 1 1.3436 -4.9862 -2.1130 36 1 0.1921 -6.0241 -1.2387 37 1 3.0880 -5.9071 0.9708 38 1 3.0239 -6.1739 -0.7879 39 1 0.9610 -7.5210 -0.5083 40 1 1.0251 -7.2542 1.2503 41 1 0.2400 -10.3546 -0.2869 42 1 0.1104 -9.1077 0.9822 43 1 -0.6565 -11.3493 1.8028 44 1 0.7714 -10.7696 2.6985 45 1 2.9034 -14.1983 1.3003 46 1 5.2612 -13.9453 0.6486 47 1 6.1289 -11.7469 -0.0337 48 1 4.6365 -9.7878 -0.0686 49 1 2.8609 -3.6139 0.8991 50 1 2.8821 -3.5965 -0.8806 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595623681.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:05 Heat of formation + Delta-G solvation = -32.609263 kcal Electronic energy + Delta-G solvation = -30080.246403 eV Core-core repulsion = 26072.722969 eV Total energy + Delta-G solvation = -4007.523434 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.66965 -39.56945 -38.22021 -37.78861 -35.78960 -34.27653 -32.34139 -31.36282 -30.93957 -30.19359 -29.58807 -28.36885 -25.02375 -24.87803 -24.50726 -23.18783 -21.81618 -21.69970 -20.79676 -19.49059 -18.66558 -18.53397 -17.68723 -17.24407 -16.44876 -16.34397 -16.01807 -15.51295 -15.29595 -14.93005 -14.56169 -14.47744 -14.21940 -14.10539 -13.84093 -13.66127 -13.49749 -13.15024 -13.06030 -12.62575 -12.48309 -12.25619 -12.17120 -12.03006 -11.63372 -11.59724 -11.56018 -11.33160 -10.96988 -10.96786 -10.65665 -10.62764 -10.52777 -10.11974 -9.86920 -9.70742 -9.49286 -9.06064 -8.74540 -8.71370 -8.31654 -8.10795 -7.74208 -5.98452 -4.04161 0.98234 1.14091 2.24563 2.31011 2.88820 3.29664 3.37857 3.41944 3.56356 3.95592 4.02119 4.38321 4.44575 4.50184 4.54349 4.69222 4.78238 4.88979 4.93493 5.03167 5.08595 5.13887 5.16732 5.28013 5.31929 5.47628 5.55275 5.61656 5.72580 5.85832 5.96873 6.01165 6.01687 6.07322 6.18591 6.25807 6.33389 6.39455 6.49073 6.55866 6.66485 6.72524 6.85630 6.94367 7.05611 7.18808 7.36449 7.60142 7.70517 7.75659 7.79666 8.06770 8.15800 8.47370 9.00076 9.60239 11.07661 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024204 B = 0.002038 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.553996 B =13735.685857 C =14470.048635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.055 3.945 10 H 0.034 0.966 11 C -0.111 4.111 12 C -0.117 4.117 13 C 0.059 3.941 14 N -0.540 5.540 15 C 0.070 3.930 16 C -0.134 4.134 17 C 0.521 3.479 18 O -0.511 6.511 19 N -0.562 5.562 20 C 0.063 3.937 21 C 0.048 3.952 22 O -0.313 6.313 23 C 0.089 3.911 24 C -0.129 4.129 25 C -0.110 4.110 26 C -0.129 4.129 27 C -0.115 4.115 28 C 0.084 3.916 29 C 0.069 3.931 30 H 0.259 0.741 31 H 0.091 0.909 32 H 0.030 0.970 33 H 0.060 0.940 34 H 0.046 0.954 35 H 0.024 0.976 36 H 0.056 0.944 37 H 0.080 0.920 38 H 0.034 0.966 39 H 0.096 0.904 40 H 0.107 0.893 41 H 0.090 0.910 42 H 0.113 0.887 43 H 0.125 0.875 44 H 0.072 0.928 45 H 0.133 0.867 46 H 0.128 0.872 47 H 0.127 0.873 48 H 0.164 0.836 49 H 0.060 0.940 50 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.489 -26.329 0.913 26.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.036 3.964 10 H 0.053 0.947 11 C -0.150 4.150 12 C -0.154 4.154 13 C -0.069 4.069 14 N -0.264 5.264 15 C -0.059 4.059 16 C -0.174 4.174 17 C 0.312 3.688 18 O -0.386 6.386 19 N -0.288 5.288 20 C -0.060 4.060 21 C -0.028 4.028 22 O -0.227 6.227 23 C 0.042 3.958 24 C -0.148 4.148 25 C -0.129 4.129 26 C -0.147 4.147 27 C -0.135 4.135 28 C -0.010 4.010 29 C -0.058 4.058 30 H 0.069 0.931 31 H 0.109 0.891 32 H 0.048 0.952 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.042 0.958 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.053 0.947 39 H 0.114 0.886 40 H 0.125 0.875 41 H 0.108 0.892 42 H 0.131 0.869 43 H 0.143 0.857 44 H 0.090 0.910 45 H 0.151 0.849 46 H 0.146 0.854 47 H 0.145 0.855 48 H 0.181 0.819 49 H 0.079 0.921 50 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 0.512 -26.154 1.335 26.193 hybrid contribution 0.849 1.072 -0.715 1.543 sum 1.361 -25.083 0.620 25.127 Atomic orbital electron populations 1.69895 1.05829 1.26208 1.50834 1.24935 0.94839 0.98971 0.95144 0.86573 0.80176 0.83932 0.77524 1.19840 1.21118 1.21038 1.21190 0.92908 0.90638 1.50492 0.92762 1.18672 0.92612 0.90288 0.94822 0.94742 1.21661 1.00061 0.94699 0.98533 1.21668 0.97117 0.96505 1.00157 1.22103 0.95829 0.98576 0.90400 1.61998 1.24330 1.02352 1.37735 1.21755 0.93675 0.88862 1.01560 1.21758 0.98452 0.92217 1.04975 1.21109 0.89805 0.82926 0.74940 1.90569 1.16177 1.84070 1.47782 1.45868 1.06845 1.04942 1.71137 1.22750 0.80293 1.01565 1.01370 1.23308 0.97968 0.84590 0.96916 1.86041 1.20477 1.34130 1.82015 1.18568 0.84318 0.92951 0.99948 1.20392 0.92482 0.97472 1.04445 1.20951 0.94440 0.97801 0.99705 1.21099 1.00055 0.92209 1.01386 1.21808 0.91281 1.01757 0.98662 1.18034 0.92144 0.86328 1.04481 1.22313 0.96421 0.88033 0.99021 0.93130 0.89090 0.95152 0.92078 0.93554 0.95801 0.92531 0.90119 0.94742 0.88566 0.87477 0.89172 0.86876 0.85720 0.90996 0.84946 0.85391 0.85478 0.81873 0.92110 0.96135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.11 11.36 55.43 0.63 -24.48 16 2 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 3 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.51 -14.00 8.56 -34.44 -0.29 -14.30 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.05 1.35 2.26 -91.69 -0.21 1.15 16 10 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 11 C -0.11 -2.58 5.03 -26.60 -0.13 -2.72 16 12 C -0.12 -2.17 6.09 -26.65 -0.16 -2.33 16 13 C 0.06 0.97 5.29 -3.83 -0.02 0.95 16 14 N -0.54 -9.51 4.66 -234.67 -1.09 -10.60 16 15 C 0.07 1.06 4.27 -3.83 -0.02 1.04 16 16 C -0.13 -1.51 4.11 -27.89 -0.11 -1.63 16 17 C 0.52 6.53 7.59 -10.99 -0.08 6.44 16 18 O -0.51 -7.94 12.85 5.54 0.07 -7.87 16 19 N -0.56 -6.10 3.01 -112.35 -0.34 -6.44 16 20 C 0.06 0.44 6.40 -3.33 -0.02 0.42 16 21 C 0.05 0.32 7.18 37.43 0.27 0.58 16 22 O -0.31 -3.03 10.32 -19.43 -0.20 -3.23 16 23 C 0.09 0.97 6.51 -39.05 -0.25 0.72 16 24 C -0.13 -1.22 9.97 -39.42 -0.39 -1.61 16 25 C -0.11 -0.96 10.03 -39.58 -0.40 -1.36 16 26 C -0.13 -1.29 10.05 -39.56 -0.40 -1.68 16 27 C -0.12 -1.42 8.94 -39.45 -0.35 -1.78 16 28 C 0.08 1.01 6.33 -83.37 -0.53 0.48 16 29 C 0.07 1.45 4.68 -3.84 -0.02 1.43 16 30 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.09 2.36 6.17 -51.93 -0.32 2.04 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.76 6.21 -51.93 -0.32 0.43 16 37 H 0.08 1.29 7.89 -51.93 -0.41 0.88 16 38 H 0.03 0.55 8.12 -51.93 -0.42 0.12 16 39 H 0.10 0.94 6.37 -51.93 -0.33 0.61 16 40 H 0.11 1.08 7.62 -51.93 -0.40 0.68 16 41 H 0.09 0.56 8.14 -51.94 -0.42 0.14 16 42 H 0.11 0.56 6.44 -51.93 -0.33 0.22 16 43 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 46 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 47 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 48 H 0.16 2.27 5.16 -52.56 -0.27 2.00 16 49 H 0.06 1.28 8.02 -51.93 -0.42 0.87 16 50 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 387.16 15.07 5.83 5.83 Total: -1.00 -31.61 387.16 -11.17 -42.78 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -7.84 Total: 0.37 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -3.22 Total: -12.57 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: -0.80 Total: -41.51 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: -0.13 Total: -11.10 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.61 -11.17 -42.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623681.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.174 kcal (2) G-P(sol) polarization free energy of solvation -31.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds