Wall clock time and date at job start Wed Apr 1 2020 02:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00017 * 2 1 4 4 H 1.48505 * 109.47120 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47166 * 300.00019 * 3 2 1 6 6 H 1.48504 * 109.46989 * 59.99835 * 3 2 1 7 7 C 1.37883 * 119.99947 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99780 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99951 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.53671 * 300.09730 * 9 7 2 11 11 C 1.53121 * 109.50298 * 60.19331 * 9 7 2 12 12 C 1.53127 * 109.15629 * 177.59524 * 11 9 7 13 13 C 1.53035 * 109.28026 * 302.34328 * 12 11 9 14 14 N 1.46856 * 109.52160 * 59.18132 * 13 12 11 15 15 C 1.46891 * 111.00080 * 174.15802 * 14 13 12 16 16 C 1.53000 * 109.47460 * 294.21438 * 15 14 13 17 17 C 1.50695 * 109.47352 * 180.02562 * 16 15 14 18 18 O 1.21299 * 120.00328 * 5.42768 * 17 16 15 19 19 N 1.34778 * 120.00313 * 185.43071 * 17 16 15 20 20 C 1.47306 * 121.15771 * 354.19535 * 19 17 16 21 21 C 1.53532 * 107.57941 * 221.97408 * 20 19 17 22 22 O 1.42962 * 108.80805 * 301.80256 * 21 20 19 23 23 C 1.35900 * 117.76920 * 49.47878 * 22 21 20 24 24 C 1.38702 * 119.66361 * 159.86597 * 23 22 21 25 25 C 1.38205 * 120.05226 * 179.79793 * 24 23 22 26 26 C 1.38280 * 120.29360 * 359.95319 * 25 24 23 27 27 C 1.38253 * 120.06155 * 0.06362 * 26 25 24 28 28 C 1.38576 * 119.87837 * 0.02562 * 27 26 25 29 29 C 1.46845 * 111.19745 * 298.25900 * 14 13 12 30 30 H 0.96998 * 120.00191 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.52114 * 297.49713 * 11 9 7 32 32 H 1.09002 * 109.52030 * 57.62775 * 11 9 7 33 33 H 1.08995 * 109.50503 * 62.29058 * 12 11 9 34 34 H 1.08996 * 109.49787 * 182.36752 * 12 11 9 35 35 H 1.09000 * 109.46709 * 299.17180 * 13 12 11 36 36 H 1.08999 * 109.46372 * 179.19776 * 13 12 11 37 37 H 1.08999 * 109.47406 * 174.20980 * 15 14 13 38 38 H 1.09000 * 109.46926 * 54.21186 * 15 14 13 39 39 H 1.08999 * 109.47185 * 59.99406 * 16 15 14 40 40 H 1.09000 * 109.46845 * 299.99798 * 16 15 14 41 41 H 1.08989 * 109.84075 * 102.44902 * 20 19 17 42 42 H 1.09000 * 109.88719 * 341.51660 * 20 19 17 43 43 H 1.09003 * 109.58164 * 182.00809 * 21 20 19 44 44 H 1.09005 * 109.58557 * 61.60112 * 21 20 19 45 45 H 1.07999 * 119.97182 * 359.52280 * 24 23 22 46 46 H 1.08003 * 119.85183 * 179.97438 * 25 24 23 47 47 H 1.08000 * 119.96764 * 180.02562 * 26 25 24 48 48 H 1.08002 * 120.06101 * 179.97438 * 27 26 25 49 49 H 1.09007 * 109.46258 * 181.75610 * 29 14 13 50 50 H 1.08996 * 109.46376 * 301.73200 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6223 -2.5571 0.8890 11 6 0.3745 -2.5834 -1.2522 12 6 -0.3411 -3.9370 -1.2747 13 6 0.6989 -5.0591 -1.2372 14 7 1.5112 -4.9348 -0.0201 15 6 2.4281 -6.0739 0.1194 16 6 1.6208 -7.3542 0.3430 17 6 2.5616 -8.5226 0.4867 18 8 3.7599 -8.3366 0.5159 19 7 2.0716 -9.7745 0.5828 20 6 0.6223 -10.0205 0.6776 21 6 0.4058 -11.1157 1.7316 22 8 1.1280 -12.2846 1.3368 23 6 2.4309 -12.1339 0.9811 24 6 3.2785 -13.2317 0.9980 25 6 4.6040 -13.0884 0.6338 26 6 5.0923 -11.8529 0.2502 27 6 4.2550 -10.7529 0.2306 28 6 2.9256 -10.8907 0.5966 29 6 2.2448 -3.6629 0.0011 30 1 -0.4850 0.8400 -0.0004 31 1 -0.3635 -1.7814 -1.2350 32 1 0.9985 -2.4854 -2.1405 33 1 -0.9948 -4.0175 -0.4063 34 1 -0.9340 -4.0200 -2.1855 35 1 1.3436 -4.9862 -2.1130 36 1 0.1921 -6.0241 -1.2387 37 1 3.0880 -5.9071 0.9708 38 1 3.0239 -6.1739 -0.7879 39 1 0.9610 -7.5210 -0.5083 40 1 1.0251 -7.2542 1.2503 41 1 0.2400 -10.3546 -0.2869 42 1 0.1104 -9.1077 0.9822 43 1 -0.6565 -11.3493 1.8028 44 1 0.7714 -10.7696 2.6985 45 1 2.9034 -14.1983 1.3003 46 1 5.2612 -13.9453 0.6486 47 1 6.1289 -11.7469 -0.0337 48 1 4.6365 -9.7878 -0.0686 49 1 2.8609 -3.6139 0.8991 50 1 2.8821 -3.5965 -0.8806 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595623681.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:03 Heat of formation + Delta-G solvation = -51.510887 kcal Electronic energy + Delta-G solvation = -30081.066039 eV Core-core repulsion = 26072.722969 eV Total energy + Delta-G solvation = -4008.343070 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.43716 -40.50185 -39.66844 -38.49718 -36.60908 -35.94370 -34.02018 -32.25096 -31.83289 -31.61927 -30.82787 -29.20837 -26.92973 -25.98550 -25.28883 -24.18460 -23.37792 -22.79752 -21.90933 -20.40861 -20.29665 -19.26300 -18.65984 -18.27782 -17.94378 -17.25531 -16.98455 -16.67093 -16.37168 -16.08979 -15.95625 -15.55127 -15.32013 -14.97601 -14.85101 -14.82592 -14.61940 -14.37192 -14.30877 -13.97850 -13.91317 -13.62215 -13.16035 -12.99392 -12.87200 -12.76915 -12.69550 -12.57846 -12.46246 -12.29471 -12.07751 -11.95583 -11.77349 -11.69961 -11.37476 -11.27446 -10.85708 -10.66378 -10.61994 -10.37482 -9.50919 -9.21622 -8.87827 -8.08965 -6.22274 0.20022 0.36727 1.38878 1.40962 1.43310 1.48114 1.52142 2.28198 2.41961 2.80348 2.92691 3.18021 3.42533 3.48568 3.74632 3.83686 4.00434 4.03186 4.06764 4.15639 4.20137 4.31299 4.33580 4.40703 4.43562 4.48034 4.50519 4.61749 4.63759 4.68230 4.72098 4.84396 4.86869 4.90403 4.93288 5.02042 5.11406 5.13770 5.18456 5.27727 5.42433 5.45040 5.52974 5.57699 5.64062 5.82002 5.95074 6.06727 6.11369 6.19672 6.29133 6.34873 6.45119 6.86311 6.89793 7.45211 8.95721 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024204 B = 0.002038 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.553996 B =13735.685857 C =14470.048635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.015 3.985 3 Si 0.952 3.048 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.537 4.537 8 H 0.047 0.953 9 C 0.054 3.946 10 H 0.002 0.998 11 C -0.106 4.106 12 C -0.109 4.109 13 C 0.060 3.940 14 N -0.540 5.540 15 C 0.075 3.925 16 C -0.120 4.120 17 C 0.518 3.482 18 O -0.552 6.552 19 N -0.560 5.560 20 C 0.056 3.944 21 C 0.043 3.957 22 O -0.321 6.321 23 C 0.081 3.919 24 C -0.134 4.134 25 C -0.103 4.103 26 C -0.136 4.136 27 C -0.141 4.141 28 C 0.061 3.939 29 C 0.081 3.919 30 H 0.261 0.739 31 H 0.059 0.941 32 H 0.018 0.982 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.020 0.980 36 H 0.103 0.897 37 H 0.065 0.935 38 H 0.025 0.975 39 H 0.122 0.878 40 H 0.127 0.873 41 H 0.102 0.898 42 H 0.138 0.862 43 H 0.161 0.839 44 H 0.068 0.932 45 H 0.154 0.846 46 H 0.160 0.840 47 H 0.142 0.858 48 H 0.141 0.859 49 H 0.053 0.947 50 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.620 -28.691 0.775 28.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.184 4.184 3 Si 0.778 3.222 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.576 4.576 8 H 0.065 0.935 9 C 0.035 3.965 10 H 0.020 0.980 11 C -0.145 4.145 12 C -0.147 4.147 13 C -0.067 4.067 14 N -0.264 5.264 15 C -0.054 4.054 16 C -0.160 4.160 17 C 0.310 3.690 18 O -0.431 6.431 19 N -0.286 5.286 20 C -0.065 4.065 21 C -0.032 4.032 22 O -0.235 6.235 23 C 0.034 3.966 24 C -0.153 4.153 25 C -0.122 4.122 26 C -0.155 4.155 27 C -0.161 4.161 28 C -0.033 4.033 29 C -0.047 4.047 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.037 0.963 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.039 0.961 36 H 0.121 0.879 37 H 0.083 0.917 38 H 0.043 0.957 39 H 0.140 0.860 40 H 0.145 0.855 41 H 0.120 0.880 42 H 0.156 0.844 43 H 0.179 0.821 44 H 0.086 0.914 45 H 0.171 0.829 46 H 0.177 0.823 47 H 0.159 0.841 48 H 0.159 0.841 49 H 0.071 0.929 50 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -0.628 -28.551 1.199 28.583 hybrid contribution 1.188 1.747 -0.645 2.209 sum 0.560 -26.804 0.554 26.816 Atomic orbital electron populations 1.70020 1.06970 1.27003 1.51192 1.25678 0.95709 1.02147 0.94825 0.85602 0.78974 0.79954 0.77691 1.19539 1.20520 1.20478 1.21547 0.92869 0.92384 1.50791 0.93489 1.18581 0.92907 0.90890 0.94098 0.97998 1.21481 0.99086 0.96823 0.97070 1.21576 0.97435 0.94310 1.01342 1.22180 0.95152 0.99849 0.89547 1.61944 1.24358 1.01486 1.38628 1.21686 0.93630 0.89561 1.00502 1.21640 0.97808 0.89524 1.06989 1.21283 0.89362 0.83781 0.74591 1.90572 1.17881 1.84788 1.49827 1.45943 1.08395 1.04089 1.70125 1.23105 0.78103 1.03002 1.02310 1.23618 0.99466 0.83685 0.96396 1.86030 1.19895 1.35701 1.81917 1.18778 0.85121 0.92801 0.99862 1.20780 0.92676 0.98024 1.03775 1.21308 0.94711 0.98115 0.98017 1.21341 1.00601 0.92272 1.01296 1.21774 0.92326 1.01648 1.00335 1.18220 0.92347 0.87230 1.05519 1.21978 0.95441 0.89056 0.98203 0.93008 0.92272 0.96298 0.92335 0.90990 0.96141 0.87945 0.91669 0.95705 0.86003 0.85468 0.87990 0.84393 0.82137 0.91411 0.82869 0.82265 0.84063 0.84149 0.92885 0.97118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.75 11.36 21.45 0.24 -52.51 16 2 C 0.02 0.86 5.30 84.66 0.45 1.31 16 3 Si 0.95 44.20 29.54 68.60 2.03 46.22 16 4 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 7 C -0.54 -30.25 8.56 25.60 0.22 -30.03 16 8 H 0.05 2.63 7.74 -2.91 -0.02 2.61 16 9 C 0.05 2.75 2.26 -11.49 -0.03 2.73 16 10 H 0.00 0.10 8.14 -2.39 -0.02 0.09 16 11 C -0.11 -5.02 5.03 30.68 0.15 -4.86 16 12 C -0.11 -3.88 6.09 30.65 0.19 -3.69 16 13 C 0.06 1.83 5.29 86.32 0.46 2.29 16 14 N -0.54 -18.53 4.66 -896.37 -4.17 -22.71 16 15 C 0.07 2.19 4.27 86.30 0.37 2.56 16 16 C -0.12 -2.43 4.11 29.85 0.12 -2.30 16 17 C 0.52 12.61 7.59 87.66 0.67 13.27 16 18 O -0.55 -17.76 12.85 -3.09 -0.04 -17.80 16 19 N -0.56 -11.45 3.01 -627.73 -1.89 -13.34 16 20 C 0.06 0.61 6.40 86.40 0.55 1.16 16 21 C 0.04 0.44 7.18 72.16 0.52 0.96 16 22 O -0.32 -5.52 10.32 -92.43 -0.95 -6.48 16 23 C 0.08 1.67 6.51 22.61 0.15 1.81 16 24 C -0.13 -2.26 9.97 22.37 0.22 -2.04 16 25 C -0.10 -1.60 10.03 22.27 0.22 -1.37 16 26 C -0.14 -2.67 10.05 22.28 0.22 -2.44 16 27 C -0.14 -3.57 8.94 22.35 0.20 -3.37 16 28 C 0.06 1.43 6.33 38.06 0.24 1.68 16 29 C 0.08 3.50 4.68 86.33 0.40 3.90 16 30 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 31 H 0.06 3.16 6.17 -2.39 -0.01 3.14 16 32 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.07 2.20 8.14 -2.39 -0.02 2.19 16 35 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.10 2.25 6.21 -2.39 -0.01 2.23 16 37 H 0.06 2.11 7.89 -2.39 -0.02 2.09 16 38 H 0.02 0.78 8.12 -2.39 -0.02 0.76 16 39 H 0.12 1.85 6.37 -2.39 -0.02 1.84 16 40 H 0.13 2.12 7.62 -2.39 -0.02 2.10 16 41 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.14 0.78 6.44 -2.39 -0.02 0.76 16 43 H 0.16 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 45 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 46 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 47 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 48 H 0.14 4.20 5.16 -4.12 -0.02 4.18 16 49 H 0.05 2.32 8.02 -2.38 -0.02 2.30 16 50 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -72.74 387.16 1.47 -71.28 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 0.93 Total: 13.78 kcal Atomic # 6 Polarization: -23.77 SS G_CDS: 5.33 Total: -18.44 kcal Atomic # 7 Polarization: -82.73 SS G_CDS: -5.82 Total: -88.55 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.99 Total: -24.28 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -72.74 1.47 -71.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623681.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.764 kcal (2) G-P(sol) polarization free energy of solvation -72.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds