Wall clock time and date at job start Wed Apr 1 2020 03:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86800 * 120.00245 * 2 1 4 4 H 1.48496 * 109.47077 * 270.00270 * 3 2 1 5 5 H 1.48503 * 109.46690 * 30.00329 * 3 2 1 6 6 H 1.48498 * 109.46947 * 150.00019 * 3 2 1 7 7 C 1.38948 * 119.99614 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00186 * 198.20721 * 7 2 1 9 9 N 1.37096 * 119.99992 * 18.20741 * 7 2 1 10 10 C 1.34780 * 119.99984 * 44.28850 * 9 7 2 11 11 O 1.21283 * 120.00067 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99874 * 179.97438 * 10 9 7 13 13 C 1.53000 * 109.47023 * 179.97438 * 12 10 9 14 14 C 1.50701 * 109.47290 * 179.97438 * 13 12 10 15 15 C 1.38127 * 120.04182 * 264.98527 * 14 13 12 16 16 C 1.38255 * 120.07489 * 180.02562 * 15 14 13 17 17 C 1.38309 * 120.15328 * 359.97169 * 16 15 14 18 18 C 1.38089 * 120.07311 * 359.74451 * 17 16 15 19 19 C 1.38892 * 120.03429 * 84.99888 * 14 13 12 20 20 N 1.39670 * 120.07385 * 359.96173 * 19 14 13 21 21 C 1.47019 * 110.99822 * 239.99478 * 20 19 14 22 22 C 1.53098 * 109.25713 * 177.60759 * 21 20 19 23 23 O 1.43015 * 109.29644 * 56.82675 * 22 21 20 24 24 C 1.43013 * 113.73737 * 301.40195 * 23 22 21 25 25 C 1.47012 * 111.00129 * 116.36238 * 20 19 14 26 26 C 1.46495 * 120.00051 * 224.28301 * 9 7 2 27 27 C 1.52997 * 117.50070 * 3.23230 * 26 9 7 28 28 C 1.53003 * 117.50318 * 294.60583 * 26 9 7 29 29 H 0.97007 * 119.99720 * 354.93604 * 1 2 3 30 30 H 1.08996 * 109.47475 * 59.99977 * 12 10 9 31 31 H 1.09002 * 109.47356 * 299.99552 * 12 10 9 32 32 H 1.09004 * 109.46930 * 60.00690 * 13 12 10 33 33 H 1.08998 * 109.47666 * 300.00031 * 13 12 10 34 34 H 1.08006 * 119.95933 * 0.02562 * 15 14 13 35 35 H 1.08003 * 119.92536 * 179.97438 * 16 15 14 36 36 H 1.08003 * 119.96894 * 180.02562 * 17 16 15 37 37 H 1.07991 * 120.03864 * 180.27377 * 18 17 16 38 38 H 1.09002 * 109.50474 * 57.67615 * 21 20 19 39 39 H 1.08992 * 109.54530 * 297.56102 * 21 20 19 40 40 H 1.09000 * 109.50637 * 176.78382 * 22 21 20 41 41 H 1.09006 * 109.50919 * 296.87303 * 22 21 20 42 42 H 1.09000 * 109.47399 * 298.65948 * 24 23 22 43 43 H 1.09002 * 109.54484 * 178.57853 * 24 23 22 44 44 H 1.08997 * 109.50977 * 302.32186 * 25 20 19 45 45 H 1.09004 * 109.50638 * 62.45863 * 25 20 19 46 46 H 1.09007 * 115.55152 * 148.93346 * 26 9 7 47 47 H 1.09003 * 117.49881 * 359.97438 * 27 26 9 48 48 H 1.08994 * 117.50802 * 145.02149 * 27 26 9 49 49 H 1.08999 * 117.49832 * 214.97768 * 28 26 9 50 50 H 1.08994 * 117.49305 * 359.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4457 2.6526 0.7001 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0482 -1.2270 0.2917 9 7 1.3747 -2.3607 -0.3720 10 6 0.5782 -2.3736 -1.4592 11 8 0.4219 -1.3613 -2.1085 12 6 -0.1184 -3.6460 -1.8678 13 6 -0.9541 -3.3892 -3.1234 14 6 -1.6502 -4.6617 -3.5325 15 6 -1.0801 -5.4873 -4.4818 16 6 -1.7183 -6.6546 -4.8580 17 6 -2.9289 -7.0002 -4.2853 18 6 -3.5016 -6.1823 -3.3314 19 6 -2.8659 -5.0055 -2.9556 20 7 -3.4450 -4.1732 -1.9950 21 6 -3.6191 -4.8827 -0.7192 22 6 -4.1997 -3.9192 0.3193 23 8 -5.4295 -3.3795 -0.1722 24 6 -5.2967 -2.6821 -1.4137 25 6 -4.7272 -3.6331 -2.4698 26 6 1.5631 -3.5834 0.4125 27 6 2.4182 -3.4864 1.6775 28 6 2.9641 -4.1979 0.4378 29 1 -0.4850 0.8368 0.0742 30 1 -0.7699 -3.9792 -1.0601 31 1 0.6244 -4.4160 -2.0766 32 1 -0.3028 -3.0560 -3.9315 33 1 -1.6969 -2.6194 -2.9144 34 1 -0.1346 -5.2207 -4.9307 35 1 -1.2705 -7.2982 -5.6008 36 1 -3.4247 -7.9129 -4.5811 37 1 -4.4447 -6.4549 -2.8813 38 1 -2.6536 -5.2519 -0.3734 39 1 -4.3010 -5.7215 -0.8585 40 1 -4.3839 -4.4553 1.2503 41 1 -3.4930 -3.1091 0.4994 42 1 -4.6223 -1.8356 -1.2847 43 1 -6.2739 -2.3228 -1.7365 44 1 -4.5707 -3.0901 -3.4019 45 1 -5.4272 -4.4516 -2.6378 46 1 0.7136 -4.2663 0.4301 47 1 2.8410 -2.5129 1.9258 48 1 2.1315 -4.1054 2.5276 49 1 3.0363 -5.2850 0.4724 50 1 3.7455 -3.6926 -0.1297 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596916400.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:30 Heat of formation + Delta-G solvation = -22.950800 kcal Electronic energy + Delta-G solvation = -31587.810635 eV Core-core repulsion = 27580.706023 eV Total energy + Delta-G solvation = -4007.104612 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.49189 -40.34199 -39.53957 -37.78130 -36.48860 -35.14601 -34.37437 -32.79104 -32.21294 -31.12837 -30.56289 -27.71541 -27.02742 -25.10471 -24.91210 -23.50557 -23.10547 -22.72893 -21.79832 -21.20149 -20.69969 -18.44835 -18.16016 -17.77184 -17.15922 -16.98760 -16.72967 -16.55305 -16.14526 -16.05678 -16.00267 -15.74187 -15.66286 -15.18477 -14.91153 -14.65967 -14.38901 -14.04667 -13.85774 -13.71432 -13.57429 -13.31428 -12.94869 -12.85313 -12.69357 -12.58958 -12.42638 -12.40747 -12.37765 -12.21186 -12.09096 -12.00398 -11.71582 -11.61975 -11.51651 -11.19860 -10.76739 -10.69876 -9.93311 -9.71288 -9.48443 -9.39138 -8.91786 -8.15860 -5.94094 0.37090 0.46788 1.35029 1.43500 1.47915 2.28712 2.47018 2.66764 2.78948 2.89657 3.13618 3.19018 3.40303 3.87343 3.88223 3.90488 3.99641 4.11803 4.14131 4.17694 4.19608 4.21615 4.28872 4.30985 4.35422 4.43182 4.51561 4.55186 4.59709 4.63681 4.67279 4.70335 4.75318 4.82219 4.90118 4.91829 4.97333 5.04716 5.11839 5.17712 5.32280 5.40057 5.47954 5.51931 5.54433 5.60184 5.70625 5.84137 5.97473 6.09193 6.24147 6.45843 7.08854 7.27239 7.76713 8.44327 8.92288 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010266 B = 0.003952 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2726.692880 B = 7083.953522 C = 8031.246198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.024 3.976 3 Si 0.965 3.035 4 H -0.292 1.292 5 H -0.282 1.282 6 H -0.254 1.254 7 C -0.356 4.356 8 H 0.074 0.926 9 N -0.446 5.446 10 C 0.470 3.530 11 O -0.588 6.588 12 C -0.094 4.094 13 C -0.036 4.036 14 C -0.066 4.066 15 C -0.120 4.120 16 C -0.116 4.116 17 C -0.114 4.114 18 C -0.148 4.148 19 C 0.079 3.921 20 N -0.516 5.516 21 C 0.033 3.967 22 C 0.062 3.938 23 O -0.396 6.396 24 C 0.062 3.938 25 C 0.032 3.968 26 C 0.047 3.953 27 C -0.171 4.171 28 C -0.180 4.180 29 H 0.257 0.743 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.130 0.870 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.128 0.872 38 H 0.085 0.915 39 H 0.059 0.941 40 H 0.122 0.878 41 H 0.036 0.964 42 H 0.037 0.963 43 H 0.123 0.877 44 H 0.081 0.919 45 H 0.058 0.942 46 H 0.120 0.880 47 H 0.080 0.920 48 H 0.116 0.884 49 H 0.124 0.876 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.962 -17.494 -4.059 19.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.182 4.182 3 Si 0.791 3.209 4 H -0.219 1.219 5 H -0.207 1.207 6 H -0.178 1.178 7 C -0.484 4.484 8 H 0.092 0.908 9 N -0.167 5.167 10 C 0.260 3.740 11 O -0.470 6.470 12 C -0.135 4.135 13 C -0.075 4.075 14 C -0.067 4.067 15 C -0.138 4.138 16 C -0.133 4.133 17 C -0.133 4.133 18 C -0.168 4.168 19 C -0.015 4.015 20 N -0.238 5.238 21 C -0.093 4.093 22 C -0.014 4.014 23 O -0.314 6.314 24 C -0.014 4.014 25 C -0.095 4.095 26 C -0.058 4.058 27 C -0.208 4.208 28 C -0.219 4.219 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.148 0.852 35 H 0.167 0.833 36 H 0.166 0.834 37 H 0.146 0.854 38 H 0.103 0.897 39 H 0.077 0.923 40 H 0.140 0.860 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.141 0.859 44 H 0.099 0.901 45 H 0.077 0.923 46 H 0.138 0.862 47 H 0.098 0.902 48 H 0.135 0.865 49 H 0.142 0.858 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.074 -16.452 -4.224 18.807 hybrid contribution 0.183 0.969 -0.104 0.991 sum -7.892 -15.483 -4.329 17.909 Atomic orbital electron populations 1.69957 1.07849 1.27257 1.45250 1.26000 0.95472 1.02348 0.94416 0.85391 0.79121 0.78978 0.77449 1.21911 1.20717 1.17812 1.19048 0.94553 0.85347 1.49408 0.90812 1.43019 1.44039 1.07607 1.22043 1.20807 0.82293 0.90164 0.80737 1.90466 1.64266 1.37137 1.55121 1.21273 0.98524 0.95284 0.98390 1.19862 0.97265 0.94318 0.96004 1.19858 0.94092 0.96153 0.96636 1.21230 1.00499 0.94938 0.97165 1.21446 0.95426 0.96328 1.00127 1.21313 0.95839 1.00056 0.96057 1.21719 1.00699 0.95043 0.99380 1.18671 0.94615 0.92722 0.95442 1.59624 1.24876 1.36271 1.03020 1.22765 1.01658 0.95732 0.89182 1.22741 0.85610 0.96088 0.97005 1.87918 1.31787 1.72991 1.38728 1.22746 1.02146 0.93400 0.83152 1.22765 0.89061 0.98807 0.98858 1.21946 0.94764 0.90590 0.98494 1.23096 1.03693 1.02050 0.92005 1.23311 0.96887 1.00395 1.01272 0.93434 0.90376 0.89369 0.93015 0.92997 0.85187 0.83297 0.83400 0.85375 0.89711 0.92265 0.86034 0.94577 0.94424 0.85946 0.90064 0.92339 0.86226 0.90190 0.86541 0.85806 0.90821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -53.98 11.74 21.66 0.25 -53.72 16 2 C 0.02 1.40 4.39 84.93 0.37 1.77 16 3 Si 0.97 46.90 29.59 68.60 2.03 48.93 16 4 H -0.29 -14.76 7.11 99.48 0.71 -14.05 16 5 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 6 H -0.25 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.36 -20.06 7.92 84.04 0.67 -19.39 16 8 H 0.07 4.04 7.26 -2.91 -0.02 4.02 16 9 N -0.45 -22.83 2.83 -613.14 -1.74 -24.57 16 10 C 0.47 24.65 6.97 87.66 0.61 25.26 16 11 O -0.59 -36.47 13.74 -3.04 -0.04 -36.52 16 12 C -0.09 -3.74 4.30 29.85 0.13 -3.61 16 13 C -0.04 -1.38 4.33 29.85 0.13 -1.25 16 14 C -0.07 -1.96 5.15 -19.73 -0.10 -2.06 16 15 C -0.12 -2.90 9.67 22.25 0.22 -2.69 16 16 C -0.12 -2.15 10.04 22.29 0.22 -1.93 16 17 C -0.11 -2.02 10.04 22.25 0.22 -1.80 16 18 C -0.15 -3.15 8.62 22.40 0.19 -2.96 16 19 C 0.08 2.13 4.71 38.22 0.18 2.31 16 20 N -0.52 -14.72 3.74 -694.30 -2.60 -17.32 16 21 C 0.03 0.83 5.36 86.31 0.46 1.30 16 22 C 0.06 1.68 7.01 72.01 0.50 2.18 16 23 O -0.40 -11.23 10.83 -148.98 -1.61 -12.84 16 24 C 0.06 1.65 7.01 72.02 0.50 2.15 16 25 C 0.03 0.80 5.41 86.32 0.47 1.27 16 26 C 0.05 1.85 5.87 44.99 0.26 2.11 16 27 C -0.17 -5.93 9.80 30.59 0.30 -5.63 16 28 C -0.18 -5.75 10.36 30.60 0.32 -5.44 16 29 H 0.26 15.47 8.32 -92.70 -0.77 14.70 16 30 H 0.08 3.01 7.47 -2.39 -0.02 2.99 16 31 H 0.09 3.06 8.11 -2.39 -0.02 3.04 16 32 H 0.05 2.05 8.01 -2.38 -0.02 2.03 16 33 H 0.05 2.31 7.59 -2.39 -0.02 2.29 16 34 H 0.13 2.93 8.06 -2.91 -0.02 2.91 16 35 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 36 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 37 H 0.13 2.35 7.04 -2.92 -0.02 2.33 16 38 H 0.08 2.14 8.04 -2.39 -0.02 2.12 16 39 H 0.06 1.28 7.20 -2.39 -0.02 1.26 16 40 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 41 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 42 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 44 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.06 1.28 7.43 -2.38 -0.02 1.26 16 46 H 0.12 4.15 6.96 -2.38 -0.02 4.14 16 47 H 0.08 3.22 6.72 -2.39 -0.02 3.20 16 48 H 0.12 3.22 8.14 -2.39 -0.02 3.20 16 49 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 50 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -76.43 400.20 2.87 -73.56 By element: Atomic # 1 Polarization: 29.96 SS G_CDS: 0.92 Total: 30.88 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: 5.66 Total: -8.40 kcal Atomic # 7 Polarization: -91.53 SS G_CDS: -4.08 Total: -95.61 kcal Atomic # 8 Polarization: -47.70 SS G_CDS: -1.65 Total: -49.35 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -76.43 2.87 -73.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596916400.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.606 kcal (2) G-P(sol) polarization free energy of solvation -76.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds