Wall clock time and date at job start Wed Apr 1 2020 03:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00422 * 2 1 4 4 H 1.48498 * 109.47077 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46955 * 299.99833 * 3 2 1 6 6 H 1.48503 * 109.47034 * 59.99747 * 3 2 1 7 7 C 1.37879 * 119.99688 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99871 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00006 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.50007 * 300.00071 * 9 7 2 11 11 C 1.53039 * 109.49530 * 179.97438 * 9 7 2 12 12 C 1.53049 * 109.53353 * 178.65349 * 11 9 7 13 13 C 1.53187 * 109.31497 * 61.36666 * 12 11 9 14 14 N 1.46931 * 108.77274 * 305.36469 * 13 12 11 15 15 C 1.34777 * 120.62462 * 233.62733 * 14 13 12 16 16 O 1.21289 * 119.99459 * 180.02562 * 15 14 13 17 17 C 1.50693 * 120.00575 * 0.02562 * 15 14 13 18 18 C 1.52997 * 109.47552 * 179.97438 * 17 15 14 19 19 N 1.46499 * 109.47559 * 180.02562 * 18 17 15 20 20 C 1.34770 * 120.00368 * 180.02562 * 19 18 17 21 21 O 1.21291 * 119.99877 * 359.97438 * 20 19 18 22 22 C 1.50696 * 120.00529 * 180.02562 * 20 19 18 23 23 C 1.50699 * 109.47520 * 180.02562 * 22 20 19 24 24 C 1.38236 * 119.99853 * 269.72426 * 23 22 20 25 25 C 1.38231 * 119.99979 * 179.76902 * 24 23 22 26 26 C 1.38232 * 119.99667 * 0.50191 * 25 24 23 27 27 C 1.38232 * 120.00391 * 359.75411 * 26 25 24 28 28 C 1.38229 * 120.00095 * 359.97438 * 27 26 25 29 29 C 1.46925 * 118.74018 * 53.60848 * 14 13 12 30 30 H 0.97007 * 119.99447 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.46238 * 298.67203 * 11 9 7 32 32 H 1.08993 * 109.46127 * 58.63700 * 11 9 7 33 33 H 1.09006 * 109.49335 * 181.31393 * 12 11 9 34 34 H 1.08993 * 109.49810 * 301.41219 * 12 11 9 35 35 H 1.09002 * 109.58909 * 65.14881 * 13 12 11 36 36 H 1.08993 * 109.58933 * 185.43112 * 13 12 11 37 37 H 1.08993 * 109.47310 * 300.00451 * 17 15 14 38 38 H 1.09005 * 109.46589 * 59.99939 * 17 15 14 39 39 H 1.09006 * 109.47187 * 300.00627 * 18 17 15 40 40 H 1.08997 * 109.46976 * 59.99903 * 18 17 15 41 41 H 0.97002 * 119.99697 * 359.97438 * 19 18 17 42 42 H 1.09006 * 109.47019 * 300.00126 * 22 20 19 43 43 H 1.08997 * 109.47260 * 59.99472 * 22 20 19 44 44 H 1.08002 * 119.99578 * 359.97438 * 24 23 22 45 45 H 1.08000 * 120.00199 * 180.23241 * 25 24 23 46 46 H 1.08007 * 119.99559 * 179.72917 * 26 25 24 47 47 H 1.07996 * 120.00056 * 179.97438 * 27 26 25 48 48 H 1.07997 * 120.00770 * 179.97438 * 28 27 26 49 49 H 1.09005 * 109.58300 * 186.60199 * 29 14 13 50 50 H 1.08998 * 109.58651 * 66.18140 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 1 0.6244 -2.5568 0.8918 11 6 2.2448 -3.6629 0.0015 12 6 1.4807 -4.9885 0.0365 13 6 0.6040 -5.1013 -1.2146 14 7 -0.2546 -3.9119 -1.2990 15 6 -1.5911 -4.0371 -1.4190 16 8 -2.2890 -3.0476 -1.4883 17 6 -2.2185 -5.4064 -1.4671 18 6 -3.7359 -5.2678 -1.6045 19 7 -4.3459 -6.5989 -1.6506 20 6 -5.6824 -6.7241 -1.7705 21 8 -6.3803 -5.7345 -1.8397 22 6 -6.3098 -8.0934 -1.8173 23 6 -7.8044 -7.9568 -1.9540 24 6 -8.5986 -7.8911 -0.8245 25 6 -9.9690 -7.7609 -0.9498 26 6 -10.5463 -7.7070 -2.2046 27 6 -9.7526 -7.7780 -3.3342 28 6 -8.3816 -7.9025 -3.2089 29 6 0.3716 -2.5837 -1.2498 30 1 -0.4850 0.8402 -0.0004 31 1 2.8549 -3.6192 -0.9007 32 1 2.8881 -3.5913 0.8784 33 1 2.1895 -5.8164 0.0599 34 1 0.8516 -5.0224 0.9259 35 1 1.2368 -5.1588 -2.1003 36 1 -0.0139 -5.9967 -1.1483 37 1 -1.8247 -5.9567 -2.3216 38 1 -1.9848 -5.9455 -0.5489 39 1 -4.1294 -4.7176 -0.7496 40 1 -3.9699 -4.7285 -2.5223 41 1 -3.7876 -7.3903 -1.5956 42 1 -5.9161 -8.6444 -2.6715 43 1 -6.0763 -8.6317 -0.8988 44 1 -8.1479 -7.9381 0.1559 45 1 -10.5892 -7.7058 -0.0673 46 1 -11.6175 -7.6097 -2.3025 47 1 -10.2037 -7.7362 -4.3146 48 1 -7.7615 -7.9584 -4.0913 49 1 -0.4017 -1.8167 -1.2056 50 1 0.9853 -2.4359 -2.1384 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597914926.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:25 Heat of formation + Delta-G solvation = -85.968095 kcal Electronic energy + Delta-G solvation = -29015.970343 eV Core-core repulsion = 25006.133097 eV Total energy + Delta-G solvation = -4009.837247 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.23318 -40.83375 -39.60383 -38.40789 -36.22303 -35.30432 -33.88111 -33.47901 -32.14352 -31.74447 -31.27531 -28.64373 -27.10738 -26.33667 -24.36815 -23.45905 -23.37194 -22.60823 -21.58533 -21.15934 -19.63278 -18.59191 -18.09037 -17.99203 -17.61311 -17.09770 -16.73333 -16.51708 -16.40531 -16.34134 -15.77167 -15.62882 -15.17377 -14.90486 -14.75182 -14.62004 -14.47697 -14.24143 -14.16817 -13.87456 -13.68826 -13.44815 -13.34970 -13.00857 -12.93579 -12.92035 -12.57653 -12.45333 -12.26758 -12.20232 -11.98410 -11.84326 -11.75049 -11.61783 -11.13563 -11.04735 -10.93477 -10.61357 -10.50866 -10.14591 -9.77776 -9.60897 -9.37918 -8.12974 -6.30075 0.43608 0.54375 1.37277 1.38961 1.50926 1.66648 1.75727 1.96840 2.38472 2.49121 2.96397 3.15719 3.60505 3.71395 3.86514 3.97909 4.06114 4.11852 4.13885 4.18924 4.23023 4.29667 4.38221 4.43650 4.47156 4.62811 4.64018 4.67595 4.79972 4.80265 4.83824 4.84918 4.92766 4.95504 5.13197 5.16087 5.18516 5.28109 5.31971 5.37269 5.40552 5.54948 5.58200 5.64740 5.66966 5.68563 5.90774 6.01074 6.15467 6.32480 6.59513 6.72140 6.84149 7.31678 7.37210 7.41533 8.90207 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019730 B = 0.001802 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.788903 B =15534.430531 C =16477.422689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.007 3.993 3 Si 0.957 3.043 4 H -0.258 1.258 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.534 4.534 8 H 0.062 0.938 9 C 0.037 3.963 10 H -0.015 1.015 11 C -0.107 4.107 12 C -0.128 4.128 13 C 0.101 3.899 14 N -0.610 5.610 15 C 0.494 3.506 16 O -0.601 6.601 17 C -0.129 4.129 18 C 0.143 3.857 19 N -0.711 5.711 20 C 0.506 3.494 21 O -0.588 6.588 22 C -0.091 4.091 23 C -0.084 4.084 24 C -0.124 4.124 25 C -0.134 4.134 26 C -0.133 4.133 27 C -0.133 4.133 28 C -0.123 4.123 29 C 0.124 3.876 30 H 0.258 0.742 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.106 0.894 34 H 0.052 0.948 35 H 0.080 0.920 36 H 0.124 0.876 37 H 0.140 0.860 38 H 0.133 0.867 39 H 0.039 0.961 40 H 0.045 0.955 41 H 0.424 0.576 42 H 0.136 0.864 43 H 0.134 0.866 44 H 0.129 0.871 45 H 0.136 0.864 46 H 0.138 0.862 47 H 0.137 0.863 48 H 0.131 0.869 49 H 0.071 0.929 50 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.175 -27.512 -4.894 29.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.193 4.193 3 Si 0.782 3.218 4 H -0.182 1.182 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.573 4.573 8 H 0.080 0.920 9 C 0.017 3.983 10 H 0.003 0.997 11 C -0.144 4.144 12 C -0.166 4.166 13 C -0.020 4.020 14 N -0.342 5.342 15 C 0.283 3.717 16 O -0.483 6.483 17 C -0.168 4.168 18 C 0.018 3.982 19 N -0.365 5.365 20 C 0.294 3.706 21 O -0.467 6.467 22 C -0.130 4.130 23 C -0.084 4.084 24 C -0.142 4.142 25 C -0.152 4.152 26 C -0.151 4.151 27 C -0.151 4.151 28 C -0.141 4.141 29 C 0.002 3.998 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.124 0.876 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.142 0.858 37 H 0.158 0.842 38 H 0.151 0.849 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.262 0.738 42 H 0.154 0.846 43 H 0.152 0.848 44 H 0.147 0.853 45 H 0.154 0.846 46 H 0.156 0.844 47 H 0.155 0.845 48 H 0.149 0.851 49 H 0.090 0.910 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -11.131 -26.197 -4.979 28.896 hybrid contribution 0.418 1.780 0.219 1.841 sum -10.713 -24.418 -4.760 27.086 Atomic orbital electron populations 1.70109 1.07468 1.27110 1.50855 1.25925 0.95547 1.03041 0.94743 0.85518 0.79379 0.79491 0.77366 1.18206 1.20979 1.20955 1.21587 0.93309 0.91625 1.50762 0.91965 1.18922 0.93186 0.93883 0.92279 0.99671 1.21522 0.97634 0.94507 1.00770 1.21929 0.99135 0.97790 0.97709 1.22094 0.93904 0.87161 0.98844 1.48550 1.06189 1.08779 1.70682 1.21349 0.82198 0.92312 0.75868 1.90737 1.62495 1.42564 1.52457 1.21762 0.93567 0.93514 1.07989 1.20674 0.91975 0.84542 1.01003 1.45745 1.07131 1.08918 1.74697 1.21322 0.82019 0.92279 0.74943 1.90764 1.63000 1.42108 1.50864 1.20738 0.91105 0.92935 1.08196 1.19606 0.94933 1.00177 0.93704 1.21289 0.94354 0.99885 0.98675 1.21424 0.95229 1.00103 0.98409 1.21465 1.00940 1.00019 0.92689 1.21427 0.93977 1.00062 0.99634 1.21289 0.95663 0.99836 0.97293 1.21632 0.97061 0.83382 0.97772 0.93267 0.92552 0.93249 0.87555 0.92913 0.90169 0.85839 0.84171 0.84919 0.94214 0.93608 0.73758 0.84603 0.84777 0.85266 0.84596 0.84397 0.84483 0.85093 0.91043 0.94749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.96 11.40 21.45 0.24 -56.71 16 2 C 0.01 0.37 5.31 84.65 0.45 0.82 16 3 Si 0.96 44.96 29.54 68.60 2.03 46.98 16 4 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 6 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 7 C -0.53 -29.57 8.56 25.60 0.22 -29.35 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.04 1.83 2.25 -11.46 -0.03 1.80 16 10 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 11 C -0.11 -3.94 5.11 30.62 0.16 -3.78 16 12 C -0.13 -3.31 6.08 30.67 0.19 -3.12 16 13 C 0.10 2.38 6.34 86.36 0.55 2.93 16 14 N -0.61 -22.68 2.97 -818.91 -2.43 -25.11 16 15 C 0.49 18.51 7.70 87.65 0.67 19.18 16 16 O -0.60 -30.67 15.40 -3.06 -0.05 -30.72 16 17 C -0.13 -2.70 4.16 29.84 0.12 -2.58 16 18 C 0.14 3.79 4.96 86.38 0.43 4.22 16 19 N -0.71 -11.96 5.56 -463.07 -2.57 -14.53 16 20 C 0.51 10.99 7.82 87.66 0.69 11.68 16 21 O -0.59 -20.36 16.03 -3.06 -0.05 -20.41 16 22 C -0.09 -1.09 5.83 29.10 0.17 -0.92 16 23 C -0.08 -1.53 4.37 -19.87 -0.09 -1.61 16 24 C -0.12 -2.32 9.70 22.27 0.22 -2.10 16 25 C -0.13 -2.37 10.05 22.27 0.22 -2.15 16 26 C -0.13 -2.27 10.05 22.27 0.22 -2.04 16 27 C -0.13 -2.32 10.05 22.27 0.22 -2.09 16 28 C -0.12 -2.24 9.70 22.27 0.22 -2.03 16 29 C 0.12 6.15 5.40 86.36 0.47 6.61 16 30 H 0.26 15.52 8.31 -92.70 -0.77 14.75 16 31 H 0.06 1.99 8.14 -2.39 -0.02 1.98 16 32 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.11 1.87 8.14 -2.38 -0.02 1.86 16 34 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.12 1.64 5.94 -2.39 -0.01 1.62 16 37 H 0.14 1.74 7.94 -2.39 -0.02 1.72 16 38 H 0.13 1.89 7.70 -2.38 -0.02 1.87 16 39 H 0.04 1.36 8.10 -2.38 -0.02 1.34 16 40 H 0.05 1.50 8.10 -2.39 -0.02 1.48 16 41 H 0.42 2.72 8.47 -92.71 -0.79 1.94 16 42 H 0.14 0.75 8.09 -2.38 -0.02 0.73 16 43 H 0.13 0.80 8.08 -2.39 -0.02 0.78 16 44 H 0.13 2.00 8.06 -2.91 -0.02 1.98 16 45 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 46 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 47 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 48 H 0.13 1.93 8.06 -2.91 -0.02 1.91 16 49 H 0.07 4.33 5.13 -2.38 -0.01 4.31 16 50 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -90.73 406.54 2.41 -88.31 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.15 Total: 16.73 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: 5.10 Total: -4.54 kcal Atomic # 7 Polarization: -91.60 SS G_CDS: -4.76 Total: -96.36 kcal Atomic # 8 Polarization: -51.04 SS G_CDS: -0.10 Total: -51.13 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -90.73 2.41 -88.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597914926.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.342 kcal (2) G-P(sol) polarization free energy of solvation -90.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds