Wall clock time and date at job start Wed Apr 1 2020 03:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99837 * 2 1 4 4 H 1.48494 * 109.47000 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47138 * 300.00178 * 3 2 1 6 6 H 1.48498 * 109.46795 * 60.00075 * 3 2 1 7 7 C 1.37879 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99890 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00154 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47211 * 180.02562 * 9 7 2 11 11 C 1.46900 * 110.99784 * 169.99710 * 10 9 7 12 12 C 1.53242 * 109.34146 * 187.25361 * 11 10 9 13 13 N 1.47083 * 108.51731 * 306.17542 * 12 11 10 14 14 C 1.34779 * 120.87971 * 231.18033 * 13 12 11 15 15 O 1.21282 * 119.99922 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00037 * 180.02562 * 14 13 12 17 17 O 1.42905 * 109.46972 * 180.02562 * 16 14 13 18 18 C 1.42899 * 113.99778 * 180.02562 * 17 16 14 19 19 C 1.50699 * 109.46785 * 179.97438 * 18 17 16 20 20 C 1.32576 * 119.99990 * 135.00059 * 19 18 17 21 21 C 1.47806 * 120.00004 * 179.97438 * 20 19 18 22 22 C 1.39541 * 120.14211 * 359.72426 * 21 20 19 23 23 C 1.37972 * 119.85486 * 179.67979 * 22 21 20 24 24 C 1.38346 * 120.13867 * 0.61828 * 23 22 21 25 25 C 1.38339 * 120.29167 * 359.67529 * 24 23 22 26 26 C 1.37978 * 120.13946 * 0.02562 * 25 24 23 27 27 C 1.47083 * 118.24033 * 51.45942 * 13 12 11 28 28 C 1.46892 * 111.00037 * 294.29994 * 10 9 7 29 29 H 0.96996 * 120.00048 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.46939 * 60.00004 * 9 7 2 31 31 H 1.09000 * 109.46766 * 300.00696 * 9 7 2 32 32 H 1.09004 * 109.49016 * 67.29613 * 11 10 9 33 33 H 1.08999 * 109.50072 * 307.21809 * 11 10 9 34 34 H 1.08991 * 109.62829 * 186.46698 * 12 11 10 35 35 H 1.08996 * 109.62555 * 65.88035 * 12 11 10 36 36 H 1.09000 * 109.47247 * 60.00371 * 16 14 13 37 37 H 1.09001 * 109.47358 * 299.99798 * 16 14 13 38 38 H 1.08997 * 109.47171 * 299.99768 * 18 17 16 39 39 H 1.08997 * 109.47442 * 59.99964 * 18 17 16 40 40 H 1.08000 * 120.00475 * 314.99543 * 19 18 17 41 41 H 1.08000 * 119.99535 * 359.97438 * 20 19 18 42 42 H 1.08004 * 120.06898 * 359.97438 * 22 21 20 43 43 H 1.07996 * 119.93124 * 180.31759 * 23 22 21 44 44 H 1.08008 * 119.85223 * 179.70251 * 24 23 22 45 45 H 1.07999 * 119.93642 * 180.02562 * 25 24 23 46 46 H 1.08003 * 120.07401 * 180.02562 * 26 25 24 47 47 H 1.08990 * 109.63037 * 68.24941 * 27 13 12 48 48 H 1.08999 * 109.62402 * 188.83173 * 27 13 12 49 49 H 1.08999 * 109.49471 * 292.70762 * 28 10 9 50 50 H 1.09003 * 109.49269 * 52.79038 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 7 2.2059 -3.6157 -0.0005 11 6 1.5214 -4.8935 0.2377 12 6 2.5640 -6.0032 0.4105 13 7 3.4619 -5.9861 -0.7544 14 6 3.7123 -7.1122 -1.4513 15 8 3.1942 -8.1578 -1.1206 16 6 4.6360 -7.0722 -2.6413 17 8 4.7397 -8.3800 -3.2080 18 6 5.5975 -8.4528 -4.3485 19 6 5.6327 -9.8696 -4.8608 20 6 5.5272 -10.1072 -6.1608 21 6 5.5623 -11.4968 -6.6634 22 6 5.7122 -12.5604 -5.7727 23 6 5.7375 -13.8556 -6.2476 24 6 5.6276 -14.1000 -7.6049 25 6 5.4849 -13.0497 -8.4938 26 6 5.4520 -11.7502 -8.0311 27 6 4.0841 -4.7088 -1.1348 28 6 2.9769 -3.6490 -1.2504 29 1 -0.4850 0.8400 -0.0004 30 1 0.6242 -2.5567 -0.8903 31 1 0.6249 -2.5570 0.8896 32 1 0.8798 -5.1263 -0.6122 33 1 0.9162 -4.8191 1.1411 34 1 2.0635 -6.9693 0.4729 35 1 3.1396 -5.8264 1.3190 36 1 5.6225 -6.7339 -2.3244 37 1 4.2381 -6.3840 -3.3871 38 1 5.2203 -7.7929 -5.1296 39 1 6.6040 -8.1437 -4.0665 40 1 5.7440 -10.6915 -4.1690 41 1 5.4157 -9.2854 -6.8526 42 1 5.8033 -12.3705 -4.7134 43 1 5.8483 -14.6800 -5.5589 44 1 5.6528 -15.1155 -7.9720 45 1 5.3992 -13.2471 -9.5521 46 1 5.3401 -10.9310 -8.7260 47 1 4.8029 -4.4101 -0.3720 48 1 4.5888 -4.8191 -2.0946 49 1 2.3150 -3.8992 -2.0795 50 1 3.4273 -2.6721 -1.4261 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602206335.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:40 Heat of formation + Delta-G solvation = -24.293769 kcal Electronic energy + Delta-G solvation = -28190.493854 eV Core-core repulsion = 24183.331007 eV Total energy + Delta-G solvation = -4007.162847 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.09378 -39.56202 -38.23370 -37.25302 -34.90475 -34.44800 -32.50026 -31.36884 -31.19486 -30.68348 -28.85613 -27.68388 -25.94947 -25.17022 -23.32370 -23.26506 -22.29145 -22.08105 -20.71217 -19.81556 -18.70789 -17.77333 -17.23029 -16.64962 -16.49053 -16.35277 -15.91427 -15.47728 -15.25182 -14.89295 -14.73896 -14.55648 -14.43309 -13.96205 -13.81489 -13.73983 -13.60364 -13.36973 -13.24783 -13.00848 -12.54113 -12.41557 -12.26362 -11.95297 -11.73188 -11.45325 -11.33947 -11.19377 -11.11129 -11.01867 -10.79422 -10.68599 -10.67425 -10.55291 -9.98226 -9.94114 -9.61887 -9.32282 -9.31008 -8.55703 -8.49471 -8.47865 -7.37939 -6.10165 -4.12482 0.51622 1.04017 2.04001 2.64162 2.75999 3.25561 3.33538 3.36944 3.54020 3.70968 4.32658 4.35115 4.40978 4.55677 4.59885 4.68984 4.71269 4.79649 4.85585 4.94175 4.97229 5.04916 5.06327 5.17372 5.20689 5.23734 5.26039 5.33668 5.46885 5.58112 5.59415 5.65200 5.71161 5.81125 5.89814 5.98928 6.03199 6.14419 6.21097 6.24623 6.39252 6.39401 6.41019 6.58298 6.61554 6.82388 7.17450 7.23489 7.47363 7.70026 7.96885 8.07299 8.22649 8.42653 8.94915 9.52329 11.00634 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021844 B = 0.001491 C = 0.001442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.518310 B =18770.766291 C =19409.695446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.510 4.510 8 H 0.065 0.935 9 C 0.193 3.807 10 N -0.535 5.535 11 C 0.041 3.959 12 C 0.120 3.880 13 N -0.608 5.608 14 C 0.515 3.485 15 O -0.530 6.530 16 C 0.046 3.954 17 O -0.359 6.359 18 C 0.089 3.911 19 C -0.133 4.133 20 C -0.113 4.113 21 C -0.054 4.054 22 C -0.114 4.114 23 C -0.118 4.118 24 C -0.122 4.122 25 C -0.121 4.121 26 C -0.110 4.110 27 C 0.107 3.893 28 C 0.049 3.951 29 H 0.261 0.739 30 H -0.008 1.008 31 H 0.032 0.968 32 H 0.027 0.973 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.127 0.873 43 H 0.123 0.877 44 H 0.121 0.879 45 H 0.123 0.877 46 H 0.124 0.876 47 H 0.079 0.921 48 H 0.077 0.923 49 H 0.026 0.974 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.056 -21.934 -13.959 29.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.549 4.549 8 H 0.083 0.917 9 C 0.068 3.932 10 N -0.260 5.260 11 C -0.089 4.089 12 C -0.002 4.002 13 N -0.343 5.343 14 C 0.302 3.698 15 O -0.406 6.406 16 C -0.034 4.034 17 O -0.278 6.278 18 C 0.012 3.988 19 C -0.150 4.150 20 C -0.131 4.131 21 C -0.054 4.054 22 C -0.131 4.131 23 C -0.136 4.136 24 C -0.140 4.140 25 C -0.139 4.139 26 C -0.128 4.128 27 C -0.016 4.016 28 C -0.080 4.080 29 H 0.071 0.929 30 H 0.009 0.991 31 H 0.050 0.950 32 H 0.045 0.955 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.144 0.856 43 H 0.141 0.859 44 H 0.139 0.861 45 H 0.141 0.859 46 H 0.142 0.858 47 H 0.098 0.902 48 H 0.095 0.905 49 H 0.044 0.956 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 13.845 -22.462 -13.324 29.560 hybrid contribution -0.109 1.232 -0.798 1.472 sum 13.737 -21.230 -14.122 28.963 Atomic orbital electron populations 1.69967 1.06103 1.26785 1.50751 1.25001 0.94858 0.99379 0.95339 0.86441 0.80013 0.83391 0.77553 1.19635 1.21131 1.20985 1.21170 0.93486 0.89836 1.50370 0.91730 1.19741 0.90008 0.87154 0.96306 1.62078 1.28134 1.02761 1.33074 1.22419 0.94955 0.90466 1.01048 1.21767 0.91635 0.99602 0.87210 1.48179 1.47206 1.08305 1.30612 1.20122 0.82263 0.83656 0.83802 1.90699 1.51229 1.30004 1.68661 1.22262 0.99570 0.86434 0.95140 1.88037 1.67363 1.27439 1.44931 1.21497 0.94178 0.94871 0.88206 1.23096 0.98780 0.97211 0.95957 1.21606 1.01214 0.94553 0.95748 1.19030 1.00058 0.92892 0.93395 1.21395 0.99625 0.92342 0.99784 1.21120 1.00045 0.96742 0.95713 1.21237 1.00145 0.99150 0.93506 1.21106 1.00267 0.92699 0.99784 1.21284 0.99880 0.97057 0.94559 1.22151 0.96341 0.82748 1.00325 1.22416 0.95052 0.98977 0.91533 0.92894 0.99057 0.94961 0.95473 0.89930 0.89324 0.90770 0.90132 0.90095 0.92282 0.91715 0.85903 0.86066 0.85557 0.85877 0.86093 0.85938 0.85790 0.90239 0.90464 0.95605 0.88361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.94 13.29 55.43 0.74 -25.20 16 2 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 3 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.51 -13.59 8.41 -34.44 -0.29 -13.88 16 8 H 0.06 1.68 7.13 -52.48 -0.37 1.30 16 9 C 0.19 4.80 4.72 -4.98 -0.02 4.78 16 10 N -0.54 -10.79 4.62 -235.47 -1.09 -11.88 16 11 C 0.04 0.71 5.62 -3.70 -0.02 0.69 16 12 C 0.12 1.85 6.60 -3.60 -0.02 1.83 16 13 N -0.61 -8.97 3.00 -172.18 -0.52 -9.48 16 14 C 0.51 7.84 7.78 -10.99 -0.09 7.76 16 15 O -0.53 -10.12 15.95 -14.35 -0.23 -10.35 16 16 C 0.05 0.51 4.78 36.01 0.17 0.69 16 17 O -0.36 -4.58 9.86 -55.14 -0.54 -5.12 16 18 C 0.09 0.77 6.36 36.01 0.23 1.00 16 19 C -0.13 -1.17 9.31 -36.21 -0.34 -1.51 16 20 C -0.11 -0.92 9.51 -37.58 -0.36 -1.28 16 21 C -0.05 -0.46 5.87 -105.01 -0.62 -1.08 16 22 C -0.11 -0.96 9.40 -39.19 -0.37 -1.33 16 23 C -0.12 -0.88 10.03 -39.64 -0.40 -1.28 16 24 C -0.12 -0.85 10.04 -39.50 -0.40 -1.24 16 25 C -0.12 -0.84 10.03 -39.64 -0.40 -1.23 16 26 C -0.11 -0.84 9.79 -39.19 -0.38 -1.22 16 27 C 0.11 1.41 6.53 -3.36 -0.02 1.39 16 28 C 0.05 0.86 5.47 -3.46 -0.02 0.84 16 29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 30 H -0.01 -0.23 8.13 -51.93 -0.42 -0.65 16 31 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 1.41 7.99 -51.93 -0.41 1.00 16 34 H 0.09 1.38 7.06 -51.93 -0.37 1.01 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.08 0.69 7.99 -51.93 -0.41 0.27 16 37 H 0.08 0.76 7.67 -51.93 -0.40 0.36 16 38 H 0.06 0.43 7.88 -51.93 -0.41 0.02 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.12 1.10 6.04 -52.49 -0.32 0.78 16 41 H 0.12 0.79 7.92 -52.49 -0.42 0.37 16 42 H 0.13 0.96 6.17 -52.48 -0.32 0.63 16 43 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 44 H 0.12 0.58 8.06 -52.48 -0.42 0.16 16 45 H 0.12 0.59 8.06 -52.49 -0.42 0.16 16 46 H 0.12 0.72 8.06 -52.48 -0.42 0.29 16 47 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.08 0.76 6.02 -51.93 -0.31 0.45 16 49 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.10 1.79 6.67 -51.93 -0.35 1.45 16 LS Contribution 409.17 15.07 6.17 6.17 Total: -1.00 -33.45 409.17 -11.80 -45.25 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -7.87 Total: -1.51 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -3.44 Total: -3.64 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: -0.87 Total: -46.56 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.77 Total: -15.48 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.45 -11.80 -45.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602206335.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.957 kcal (2) G-P(sol) polarization free energy of solvation -33.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds