Wall clock time and date at job start Wed Apr 1 2020 03:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99837 * 2 1 4 4 H 1.48494 * 109.47000 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47138 * 300.00178 * 3 2 1 6 6 H 1.48498 * 109.46795 * 60.00075 * 3 2 1 7 7 C 1.37879 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99890 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00154 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47211 * 180.02562 * 9 7 2 11 11 C 1.46900 * 110.99784 * 169.99710 * 10 9 7 12 12 C 1.53242 * 109.34146 * 187.25361 * 11 10 9 13 13 N 1.47083 * 108.51731 * 306.17542 * 12 11 10 14 14 C 1.34779 * 120.87971 * 231.18033 * 13 12 11 15 15 O 1.21282 * 119.99922 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00037 * 180.02562 * 14 13 12 17 17 O 1.42905 * 109.46972 * 180.02562 * 16 14 13 18 18 C 1.42899 * 113.99778 * 180.02562 * 17 16 14 19 19 C 1.50699 * 109.46785 * 179.97438 * 18 17 16 20 20 C 1.32576 * 119.99990 * 135.00059 * 19 18 17 21 21 C 1.47806 * 120.00004 * 179.97438 * 20 19 18 22 22 C 1.39541 * 120.14211 * 359.72426 * 21 20 19 23 23 C 1.37972 * 119.85486 * 179.67979 * 22 21 20 24 24 C 1.38346 * 120.13867 * 0.61828 * 23 22 21 25 25 C 1.38339 * 120.29167 * 359.67529 * 24 23 22 26 26 C 1.37978 * 120.13946 * 0.02562 * 25 24 23 27 27 C 1.47083 * 118.24033 * 51.45942 * 13 12 11 28 28 C 1.46892 * 111.00037 * 294.29994 * 10 9 7 29 29 H 0.96996 * 120.00048 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.46939 * 60.00004 * 9 7 2 31 31 H 1.09000 * 109.46766 * 300.00696 * 9 7 2 32 32 H 1.09004 * 109.49016 * 67.29613 * 11 10 9 33 33 H 1.08999 * 109.50072 * 307.21809 * 11 10 9 34 34 H 1.08991 * 109.62829 * 186.46698 * 12 11 10 35 35 H 1.08996 * 109.62555 * 65.88035 * 12 11 10 36 36 H 1.09000 * 109.47247 * 60.00371 * 16 14 13 37 37 H 1.09001 * 109.47358 * 299.99798 * 16 14 13 38 38 H 1.08997 * 109.47171 * 299.99768 * 18 17 16 39 39 H 1.08997 * 109.47442 * 59.99964 * 18 17 16 40 40 H 1.08000 * 120.00475 * 314.99543 * 19 18 17 41 41 H 1.08000 * 119.99535 * 359.97438 * 20 19 18 42 42 H 1.08004 * 120.06898 * 359.97438 * 22 21 20 43 43 H 1.07996 * 119.93124 * 180.31759 * 23 22 21 44 44 H 1.08008 * 119.85223 * 179.70251 * 24 23 22 45 45 H 1.07999 * 119.93642 * 180.02562 * 25 24 23 46 46 H 1.08003 * 120.07401 * 180.02562 * 26 25 24 47 47 H 1.08990 * 109.63037 * 68.24941 * 27 13 12 48 48 H 1.08999 * 109.62402 * 188.83173 * 27 13 12 49 49 H 1.08999 * 109.49471 * 292.70762 * 28 10 9 50 50 H 1.09003 * 109.49269 * 52.79038 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 7 2.2059 -3.6157 -0.0005 11 6 1.5214 -4.8935 0.2377 12 6 2.5640 -6.0032 0.4105 13 7 3.4619 -5.9861 -0.7544 14 6 3.7123 -7.1122 -1.4513 15 8 3.1942 -8.1578 -1.1206 16 6 4.6360 -7.0722 -2.6413 17 8 4.7397 -8.3800 -3.2080 18 6 5.5975 -8.4528 -4.3485 19 6 5.6327 -9.8696 -4.8608 20 6 5.5272 -10.1072 -6.1608 21 6 5.5623 -11.4968 -6.6634 22 6 5.7122 -12.5604 -5.7727 23 6 5.7375 -13.8556 -6.2476 24 6 5.6276 -14.1000 -7.6049 25 6 5.4849 -13.0497 -8.4938 26 6 5.4520 -11.7502 -8.0311 27 6 4.0841 -4.7088 -1.1348 28 6 2.9769 -3.6490 -1.2504 29 1 -0.4850 0.8400 -0.0004 30 1 0.6242 -2.5567 -0.8903 31 1 0.6249 -2.5570 0.8896 32 1 0.8798 -5.1263 -0.6122 33 1 0.9162 -4.8191 1.1411 34 1 2.0635 -6.9693 0.4729 35 1 3.1396 -5.8264 1.3190 36 1 5.6225 -6.7339 -2.3244 37 1 4.2381 -6.3840 -3.3871 38 1 5.2203 -7.7929 -5.1296 39 1 6.6040 -8.1437 -4.0665 40 1 5.7440 -10.6915 -4.1690 41 1 5.4157 -9.2854 -6.8526 42 1 5.8033 -12.3705 -4.7134 43 1 5.8483 -14.6800 -5.5589 44 1 5.6528 -15.1155 -7.9720 45 1 5.3992 -13.2471 -9.5521 46 1 5.3401 -10.9310 -8.7260 47 1 4.8029 -4.4101 -0.3720 48 1 4.5888 -4.8191 -2.0946 49 1 2.3150 -3.8992 -2.0795 50 1 3.4273 -2.6721 -1.4261 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602206335.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:39 Heat of formation + Delta-G solvation = -43.825127 kcal Electronic energy + Delta-G solvation = -28191.340798 eV Core-core repulsion = 24183.331007 eV Total energy + Delta-G solvation = -4008.009791 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.27916 -40.11019 -39.30182 -38.44871 -35.99079 -35.52388 -34.41844 -32.43466 -31.88555 -31.40134 -30.23981 -28.98646 -27.10219 -26.31203 -24.63515 -23.85393 -23.80166 -22.85095 -22.12537 -20.49421 -19.87277 -18.59572 -18.48454 -18.02135 -17.56724 -17.30376 -16.87102 -16.56591 -16.24822 -16.08022 -15.98876 -15.69846 -15.43509 -15.29600 -15.24693 -14.67879 -14.37855 -14.21484 -14.14298 -13.92342 -13.89288 -13.55777 -13.26303 -13.20843 -13.02834 -12.74494 -12.60464 -12.40804 -12.33730 -12.30105 -12.09884 -11.98606 -11.77266 -11.74697 -11.29909 -11.26206 -10.81111 -10.68604 -10.61696 -9.87243 -9.80647 -9.07708 -9.06363 -8.19196 -6.29618 -0.06479 0.49014 1.41181 1.44288 1.45657 1.50468 1.58496 1.76630 2.42093 2.83230 3.02065 3.13596 3.22828 3.47224 3.82299 3.86471 3.94887 4.02642 4.09867 4.13812 4.18541 4.22453 4.24192 4.24940 4.29201 4.40044 4.45152 4.45781 4.53774 4.54254 4.61960 4.68307 4.72728 4.83687 4.94672 5.02325 5.05663 5.13090 5.20127 5.22384 5.34149 5.40130 5.46561 5.60579 5.62932 5.65268 5.82892 6.02761 6.05187 6.09867 6.23982 6.39907 6.55639 6.86906 7.07448 7.40729 8.92403 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021844 B = 0.001491 C = 0.001442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.518310 B =18770.766291 C =19409.695446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.000 4.000 3 Si 0.971 3.029 4 H -0.256 1.256 5 H -0.281 1.281 6 H -0.283 1.283 7 C -0.519 4.519 8 H 0.073 0.927 9 C 0.207 3.793 10 N -0.538 5.538 11 C 0.044 3.956 12 C 0.128 3.872 13 N -0.609 5.609 14 C 0.510 3.490 15 O -0.577 6.577 16 C 0.049 3.951 17 O -0.394 6.394 18 C 0.087 3.913 19 C -0.150 4.150 20 C -0.108 4.108 21 C -0.076 4.076 22 C -0.132 4.132 23 C -0.130 4.130 24 C -0.128 4.128 25 C -0.127 4.127 26 C -0.119 4.119 27 C 0.118 3.882 28 C 0.046 3.954 29 H 0.263 0.737 30 H -0.041 1.041 31 H 0.003 0.997 32 H 0.013 0.987 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.117 0.883 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.112 0.888 41 H 0.139 0.861 42 H 0.125 0.875 43 H 0.137 0.863 44 H 0.142 0.858 45 H 0.145 0.855 46 H 0.141 0.859 47 H 0.092 0.908 48 H 0.122 0.878 49 H 0.016 0.984 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.781 -21.694 -15.536 31.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.198 4.198 3 Si 0.796 3.204 4 H -0.180 1.180 5 H -0.207 1.207 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.091 0.909 9 C 0.081 3.919 10 N -0.263 5.263 11 C -0.085 4.085 12 C 0.005 3.995 13 N -0.344 5.344 14 C 0.299 3.701 15 O -0.457 6.457 16 C -0.030 4.030 17 O -0.314 6.314 18 C 0.012 3.988 19 C -0.168 4.168 20 C -0.126 4.126 21 C -0.076 4.076 22 C -0.150 4.150 23 C -0.148 4.148 24 C -0.146 4.146 25 C -0.145 4.145 26 C -0.136 4.136 27 C -0.004 4.004 28 C -0.082 4.082 29 H 0.072 0.928 30 H -0.023 1.023 31 H 0.021 0.979 32 H 0.032 0.968 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.134 0.866 37 H 0.123 0.877 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.130 0.870 41 H 0.156 0.844 42 H 0.143 0.857 43 H 0.155 0.845 44 H 0.160 0.840 45 H 0.162 0.838 46 H 0.158 0.842 47 H 0.111 0.889 48 H 0.140 0.860 49 H 0.034 0.966 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 16.607 -22.227 -14.913 31.500 hybrid contribution -0.999 1.050 -0.351 1.491 sum 15.608 -21.176 -15.264 30.415 Atomic orbital electron populations 1.70109 1.07959 1.27818 1.51933 1.25950 0.95658 1.03365 0.94836 0.85301 0.79292 0.78416 0.77393 1.17970 1.20735 1.20951 1.21496 0.93932 0.90525 1.49762 0.90925 1.19393 0.90146 0.89029 0.93382 1.62013 1.26957 1.02351 1.34944 1.22427 0.95591 0.90125 1.00402 1.21597 0.91404 0.98136 0.88352 1.48274 1.46879 1.09027 1.30194 1.20936 0.82071 0.82735 0.84379 1.90678 1.53212 1.31712 1.70051 1.22359 1.00247 0.86602 0.93810 1.87995 1.68602 1.28368 1.46416 1.21677 0.94725 0.94877 0.87502 1.23131 1.00083 0.97439 0.96173 1.21783 1.00086 0.94880 0.95820 1.19266 1.00983 0.93242 0.94098 1.21570 1.00383 0.93069 0.99993 1.21388 0.99997 0.96847 0.96567 1.21574 0.99331 1.00373 0.93300 1.21450 0.99578 0.92467 1.01030 1.21570 0.99547 0.98072 0.94448 1.22223 0.94618 0.80361 1.03235 1.22503 0.95671 1.00337 0.89733 0.92812 1.02323 0.97874 0.96835 0.90114 0.89660 0.89621 0.86563 0.87702 0.90578 0.89646 0.86997 0.84353 0.85711 0.84500 0.84006 0.83763 0.84156 0.88946 0.85995 0.96587 0.89141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.40 13.29 21.45 0.28 -55.11 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.97 42.33 29.54 68.60 2.03 44.36 16 4 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 5 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 6 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 7 C -0.52 -27.82 8.41 25.60 0.22 -27.60 16 8 H 0.07 3.70 7.13 -2.91 -0.02 3.68 16 9 C 0.21 10.66 4.72 85.56 0.40 11.07 16 10 N -0.54 -21.82 4.62 -898.89 -4.15 -25.98 16 11 C 0.04 1.57 5.62 86.38 0.49 2.06 16 12 C 0.13 3.88 6.60 86.35 0.57 4.45 16 13 N -0.61 -16.84 3.00 -817.05 -2.45 -19.29 16 14 C 0.51 14.67 7.78 87.66 0.68 15.35 16 15 O -0.58 -22.00 15.95 16.00 0.26 -21.75 16 16 C 0.05 0.94 4.78 71.24 0.34 1.28 16 17 O -0.39 -9.33 9.86 -129.94 -1.28 -10.61 16 18 C 0.09 1.33 6.36 71.24 0.45 1.78 16 19 C -0.15 -2.54 9.31 24.53 0.23 -2.32 16 20 C -0.11 -1.64 9.51 23.65 0.22 -1.42 16 21 C -0.08 -1.27 5.87 -20.12 -0.12 -1.39 16 22 C -0.13 -2.26 9.40 22.52 0.21 -2.05 16 23 C -0.13 -1.88 10.03 22.23 0.22 -1.66 16 24 C -0.13 -1.60 10.04 22.32 0.22 -1.38 16 25 C -0.13 -1.57 10.03 22.23 0.22 -1.34 16 26 C -0.12 -1.66 9.79 22.52 0.22 -1.44 16 27 C 0.12 2.73 6.53 86.50 0.57 3.30 16 28 C 0.05 1.55 5.47 86.54 0.47 2.03 16 29 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 30 H -0.04 -2.33 8.13 -2.39 -0.02 -2.35 16 31 H 0.00 0.18 7.97 -2.39 -0.02 0.16 16 32 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 33 H 0.08 2.87 7.99 -2.39 -0.02 2.86 16 34 H 0.09 2.68 7.06 -2.39 -0.02 2.66 16 35 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.12 1.41 7.99 -2.39 -0.02 1.39 16 37 H 0.11 1.52 7.67 -2.39 -0.02 1.51 16 38 H 0.08 0.87 7.88 -2.39 -0.02 0.85 16 39 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.11 2.07 6.04 -2.91 -0.02 2.06 16 41 H 0.14 1.52 7.92 -2.91 -0.02 1.50 16 42 H 0.13 2.02 6.17 -2.91 -0.02 2.00 16 43 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 44 H 0.14 1.08 8.06 -2.91 -0.02 1.06 16 45 H 0.14 1.05 8.06 -2.91 -0.02 1.03 16 46 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 47 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 48 H 0.12 1.79 6.02 -2.39 -0.01 1.77 16 49 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 50 H 0.09 3.18 6.67 -2.39 -0.02 3.16 16 Total: -1.00 -75.23 409.17 1.69 -73.54 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 0.92 Total: 13.68 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: 6.09 Total: 1.16 kcal Atomic # 7 Polarization: -94.06 SS G_CDS: -6.32 Total: -100.38 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -1.03 Total: -32.36 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -75.23 1.69 -73.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602206335.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.718 kcal (2) G-P(sol) polarization free energy of solvation -75.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds