Wall clock time and date at job start Wed Apr 1 2020 03:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99962 * 2 1 4 4 H 1.48490 * 109.47510 * 270.00448 * 3 2 1 5 5 H 1.48502 * 109.47194 * 30.00508 * 3 2 1 6 6 H 1.48501 * 109.47042 * 150.00143 * 3 2 1 7 7 C 1.37874 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00449 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99990 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47219 * 180.02562 * 9 7 2 11 11 C 1.46893 * 111.00305 * 169.99543 * 10 9 7 12 12 C 1.53237 * 109.34549 * 187.25002 * 11 10 9 13 13 N 1.47078 * 108.52363 * 306.17832 * 12 11 10 14 14 C 1.34778 * 120.87830 * 231.18676 * 13 12 11 15 15 O 1.21277 * 120.00078 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99931 * 179.97438 * 14 13 12 17 17 O 1.42903 * 109.47421 * 179.97438 * 16 14 13 18 18 C 1.42895 * 114.00094 * 180.02562 * 17 16 14 19 19 C 1.50704 * 109.46860 * 180.02562 * 18 17 16 20 20 C 1.32568 * 119.99950 * 136.00127 * 19 18 17 21 21 C 1.47809 * 120.00054 * 7.83116 * 20 19 18 22 22 C 1.39530 * 120.14179 * 214.87131 * 21 20 19 23 23 C 1.37980 * 119.85734 * 179.76998 * 22 21 20 24 24 C 1.38354 * 120.13594 * 0.51487 * 23 22 21 25 25 C 1.38343 * 120.28702 * 359.73921 * 24 23 22 26 26 C 1.37973 * 120.14281 * 0.02562 * 25 24 23 27 27 C 1.47072 * 118.23908 * 51.44812 * 13 12 11 28 28 C 1.46903 * 111.00028 * 294.30250 * 10 9 7 29 29 H 0.97005 * 120.00088 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.47453 * 59.99943 * 9 7 2 31 31 H 1.08998 * 109.46463 * 299.99747 * 9 7 2 32 32 H 1.09008 * 109.49075 * 67.29567 * 11 10 9 33 33 H 1.09001 * 109.49773 * 307.21730 * 11 10 9 34 34 H 1.08995 * 109.63119 * 186.45742 * 12 11 10 35 35 H 1.09004 * 109.62324 * 65.88263 * 12 11 10 36 36 H 1.08999 * 109.46919 * 59.99694 * 16 14 13 37 37 H 1.09002 * 109.47084 * 299.99829 * 16 14 13 38 38 H 1.08994 * 109.47414 * 59.99497 * 18 17 16 39 39 H 1.09001 * 109.46785 * 299.99707 * 18 17 16 40 40 H 1.07997 * 119.99809 * 315.99607 * 19 18 17 41 41 H 1.07998 * 119.99772 * 188.11354 * 20 19 18 42 42 H 1.08001 * 120.07218 * 0.03099 * 22 21 20 43 43 H 1.07994 * 119.92974 * 180.25795 * 23 22 21 44 44 H 1.07996 * 119.85387 * 179.76569 * 24 23 22 45 45 H 1.08000 * 119.92478 * 180.02562 * 25 24 23 46 46 H 1.07994 * 120.07018 * 180.02562 * 26 25 24 47 47 H 1.09007 * 109.62890 * 68.25781 * 27 13 12 48 48 H 1.09002 * 109.62940 * 188.83424 * 27 13 12 49 49 H 1.09001 * 109.48674 * 292.70117 * 28 10 9 50 50 H 1.08996 * 109.49502 * 52.78535 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.3999 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5213 -4.8934 0.2377 12 6 2.5638 -6.0032 0.4104 13 7 3.4616 -5.9862 -0.7544 14 6 3.7119 -7.1123 -1.4513 15 8 3.1944 -8.1580 -1.1202 16 6 4.6347 -7.0722 -2.6420 17 8 4.7394 -8.3802 -3.2080 18 6 5.5965 -8.4529 -4.3490 19 6 5.6318 -9.8698 -4.8612 20 6 5.5455 -10.1064 -6.1628 21 6 5.5891 -8.9832 -7.1226 22 6 4.8318 -9.0324 -8.2935 23 6 4.8733 -7.9786 -9.1832 24 6 5.6717 -6.8795 -8.9213 25 6 6.4290 -6.8269 -7.7647 26 6 6.3927 -7.8720 -6.8647 27 6 4.0837 -4.7090 -1.1350 28 6 2.9767 -3.6490 -1.2505 29 1 -0.4850 0.8401 0.0004 30 1 0.6240 -2.5568 -0.8902 31 1 0.6248 -2.5570 0.8897 32 1 0.8796 -5.1264 -0.6122 33 1 0.9161 -4.8191 1.1412 34 1 2.0632 -6.9693 0.4730 35 1 3.1395 -5.8264 1.3190 36 1 5.6213 -6.7334 -2.3258 37 1 4.2360 -6.3842 -3.3876 38 1 6.6028 -8.1425 -4.0679 39 1 5.2179 -7.7938 -5.1303 40 1 5.7275 -10.6923 -4.1680 41 1 5.4387 -11.1194 -6.5215 42 1 4.2113 -9.8917 -8.5010 43 1 4.2844 -8.0136 -10.0878 44 1 5.7036 -6.0588 -9.6227 45 1 7.0499 -5.9659 -7.5660 46 1 6.9839 -7.8295 -5.9620 47 1 4.8027 -4.4102 -0.3721 48 1 4.5885 -4.8192 -2.0947 49 1 2.3148 -3.8993 -2.0795 50 1 3.4272 -2.6722 -1.4262 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602206336.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:43 Heat of formation + Delta-G solvation = -16.847692 kcal Electronic energy + Delta-G solvation = -29071.231105 eV Core-core repulsion = 25064.391144 eV Total energy + Delta-G solvation = -4006.839961 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.12537 -39.74877 -38.13719 -37.22654 -34.97361 -34.43776 -32.49281 -31.43432 -31.08952 -30.22500 -28.88135 -27.77233 -26.26355 -25.20291 -23.29082 -22.88432 -22.65287 -22.06322 -20.69656 -19.74250 -18.69403 -17.70299 -16.72304 -16.66318 -16.63568 -16.38340 -15.99203 -15.56499 -15.17745 -14.98740 -14.75743 -14.51678 -14.40288 -14.04572 -13.82754 -13.75366 -13.58779 -13.48893 -12.97146 -12.94644 -12.57406 -12.37406 -12.23935 -11.96246 -11.87812 -11.43001 -11.33177 -11.11535 -11.06331 -11.00155 -10.79108 -10.66549 -10.57180 -10.43762 -9.93083 -9.83492 -9.60147 -9.31306 -9.23300 -8.61845 -8.55104 -8.46794 -7.37231 -6.09501 -4.11868 0.62471 1.04377 1.92389 2.65697 2.78736 3.26413 3.33499 3.36787 3.48011 3.77098 4.35236 4.35843 4.47175 4.53209 4.60974 4.72316 4.74827 4.77743 4.89267 4.95711 4.98540 5.06337 5.10957 5.16773 5.21781 5.26657 5.34604 5.40970 5.48013 5.58525 5.60286 5.68124 5.72073 5.82070 5.96163 5.98840 6.00525 6.16726 6.21956 6.25279 6.35863 6.40251 6.40988 6.59609 6.63164 6.86129 7.18076 7.24247 7.48639 7.70360 7.97507 8.08041 8.24141 8.43312 8.95189 9.52798 11.01270 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010926 B = 0.002147 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.077332 B =13037.311145 C =14882.154254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.510 4.510 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.536 5.536 11 C 0.041 3.959 12 C 0.120 3.880 13 N -0.608 5.608 14 C 0.515 3.485 15 O -0.530 6.530 16 C 0.047 3.953 17 O -0.361 6.361 18 C 0.077 3.923 19 C -0.131 4.131 20 C -0.116 4.116 21 C -0.061 4.061 22 C -0.107 4.107 23 C -0.120 4.120 24 C -0.119 4.119 25 C -0.120 4.120 26 C -0.117 4.117 27 C 0.107 3.893 28 C 0.050 3.950 29 H 0.262 0.738 30 H -0.009 1.009 31 H 0.032 0.968 32 H 0.027 0.973 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.125 0.875 46 H 0.126 0.874 47 H 0.079 0.921 48 H 0.077 0.923 49 H 0.026 0.974 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.030 -16.715 -15.067 26.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.549 4.549 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.261 5.261 11 C -0.089 4.089 12 C -0.002 4.002 13 N -0.343 5.343 14 C 0.302 3.698 15 O -0.406 6.406 16 C -0.033 4.033 17 O -0.279 6.279 18 C 0.002 3.998 19 C -0.149 4.149 20 C -0.134 4.134 21 C -0.061 4.061 22 C -0.125 4.125 23 C -0.138 4.138 24 C -0.137 4.137 25 C -0.138 4.138 26 C -0.135 4.135 27 C -0.016 4.016 28 C -0.080 4.080 29 H 0.072 0.928 30 H 0.009 0.991 31 H 0.050 0.950 32 H 0.045 0.955 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.145 0.855 41 H 0.146 0.854 42 H 0.142 0.858 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.143 0.857 46 H 0.144 0.856 47 H 0.098 0.902 48 H 0.095 0.905 49 H 0.044 0.956 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 13.816 -17.240 -14.426 26.385 hybrid contribution -0.101 1.208 -0.806 1.456 sum 13.714 -16.031 -15.232 26.021 Atomic orbital electron populations 1.69957 1.06104 1.26896 1.50667 1.24999 0.94867 0.99378 0.95352 0.86495 0.79809 0.83070 0.78023 1.20738 1.21236 1.19739 1.21126 0.93438 0.89847 1.50472 0.91799 1.19731 0.89995 0.87130 0.96289 1.62079 1.28144 1.02772 1.33080 1.22417 0.94961 0.90467 1.01042 1.21765 0.91635 0.99594 0.87215 1.48169 1.47216 1.08299 1.30608 1.20121 0.82243 0.83649 0.83782 1.90693 1.51237 1.29999 1.68667 1.22237 0.99482 0.86514 0.95081 1.88008 1.67420 1.27344 1.45119 1.22037 0.93848 0.95822 0.88137 1.23029 0.98881 0.97267 0.95706 1.21671 1.01452 0.97680 0.92559 1.19123 0.97505 0.94527 0.94962 1.21289 0.98697 0.98980 0.93579 1.21136 0.99153 0.93979 0.99526 1.21261 0.96743 0.98245 0.97452 1.21134 0.99574 0.98709 0.94400 1.21500 0.99057 0.93442 0.99465 1.22148 0.96340 0.82763 1.00317 1.22416 0.95060 0.98966 0.91531 0.92834 0.99082 0.94963 0.95476 0.89928 0.89326 0.90774 0.90247 0.90200 0.92126 0.91211 0.85492 0.85371 0.85790 0.85891 0.85971 0.85737 0.85594 0.90243 0.90481 0.95605 0.88370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.04 13.29 55.43 0.74 -25.31 16 2 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 3 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.51 -13.66 8.41 -34.44 -0.29 -13.95 16 8 H 0.06 1.66 7.13 -52.49 -0.37 1.29 16 9 C 0.19 4.84 4.72 -4.98 -0.02 4.82 16 10 N -0.54 -10.90 4.62 -235.47 -1.09 -11.98 16 11 C 0.04 0.72 5.62 -3.71 -0.02 0.70 16 12 C 0.12 1.88 6.60 -3.60 -0.02 1.85 16 13 N -0.61 -9.12 3.00 -172.19 -0.52 -9.64 16 14 C 0.52 8.02 7.78 -10.99 -0.09 7.93 16 15 O -0.53 -10.25 15.95 -14.35 -0.23 -10.48 16 16 C 0.05 0.55 4.78 36.00 0.17 0.72 16 17 O -0.36 -4.80 9.86 -55.14 -0.54 -5.34 16 18 C 0.08 0.74 4.52 36.01 0.16 0.90 16 19 C -0.13 -1.17 9.84 -36.21 -0.36 -1.52 16 20 C -0.12 -0.93 9.81 -37.58 -0.37 -1.30 16 21 C -0.06 -0.53 5.18 -105.02 -0.54 -1.07 16 22 C -0.11 -0.86 9.79 -39.19 -0.38 -1.25 16 23 C -0.12 -0.90 10.03 -39.63 -0.40 -1.30 16 24 C -0.12 -0.88 10.04 -39.50 -0.40 -1.28 16 25 C -0.12 -0.91 10.03 -39.64 -0.40 -1.30 16 26 C -0.12 -0.94 7.41 -39.19 -0.29 -1.23 16 27 C 0.11 1.44 6.53 -3.37 -0.02 1.42 16 28 C 0.05 0.87 5.47 -3.46 -0.02 0.85 16 29 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 30 H -0.01 -0.23 8.12 -51.93 -0.42 -0.66 16 31 H 0.03 0.87 7.97 -51.93 -0.41 0.45 16 32 H 0.03 0.50 8.14 -51.92 -0.42 0.08 16 33 H 0.08 1.42 7.99 -51.93 -0.41 1.01 16 34 H 0.09 1.39 7.06 -51.93 -0.37 1.03 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.08 0.72 7.99 -51.93 -0.41 0.30 16 37 H 0.08 0.82 7.67 -51.93 -0.40 0.42 16 38 H 0.06 0.46 7.52 -51.93 -0.39 0.07 16 39 H 0.07 0.66 5.28 -51.93 -0.27 0.39 16 40 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 41 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 43 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 44 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 45 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 46 H 0.13 0.85 5.80 -52.49 -0.30 0.54 16 47 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.08 0.78 6.02 -51.93 -0.31 0.47 16 49 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.10 1.81 6.67 -51.93 -0.35 1.46 16 LS Contribution 404.05 15.07 6.09 6.09 Total: -1.00 -33.46 404.05 -11.75 -45.21 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -7.80 Total: -0.82 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -3.38 Total: -3.57 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: -0.87 Total: -46.93 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.77 Total: -15.82 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.46 -11.75 -45.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602206336.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.363 kcal (2) G-P(sol) polarization free energy of solvation -33.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds