Wall clock time and date at job start Wed Apr 1 2020 03:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99962 * 2 1 4 4 H 1.48490 * 109.47510 * 270.00448 * 3 2 1 5 5 H 1.48502 * 109.47194 * 30.00508 * 3 2 1 6 6 H 1.48501 * 109.47042 * 150.00143 * 3 2 1 7 7 C 1.37874 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00449 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99990 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47219 * 180.02562 * 9 7 2 11 11 C 1.46893 * 111.00305 * 169.99543 * 10 9 7 12 12 C 1.53237 * 109.34549 * 187.25002 * 11 10 9 13 13 N 1.47078 * 108.52363 * 306.17832 * 12 11 10 14 14 C 1.34778 * 120.87830 * 231.18676 * 13 12 11 15 15 O 1.21277 * 120.00078 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99931 * 179.97438 * 14 13 12 17 17 O 1.42903 * 109.47421 * 179.97438 * 16 14 13 18 18 C 1.42895 * 114.00094 * 180.02562 * 17 16 14 19 19 C 1.50704 * 109.46860 * 180.02562 * 18 17 16 20 20 C 1.32568 * 119.99950 * 136.00127 * 19 18 17 21 21 C 1.47809 * 120.00054 * 7.83116 * 20 19 18 22 22 C 1.39530 * 120.14179 * 214.87131 * 21 20 19 23 23 C 1.37980 * 119.85734 * 179.76998 * 22 21 20 24 24 C 1.38354 * 120.13594 * 0.51487 * 23 22 21 25 25 C 1.38343 * 120.28702 * 359.73921 * 24 23 22 26 26 C 1.37973 * 120.14281 * 0.02562 * 25 24 23 27 27 C 1.47072 * 118.23908 * 51.44812 * 13 12 11 28 28 C 1.46903 * 111.00028 * 294.30250 * 10 9 7 29 29 H 0.97005 * 120.00088 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.47453 * 59.99943 * 9 7 2 31 31 H 1.08998 * 109.46463 * 299.99747 * 9 7 2 32 32 H 1.09008 * 109.49075 * 67.29567 * 11 10 9 33 33 H 1.09001 * 109.49773 * 307.21730 * 11 10 9 34 34 H 1.08995 * 109.63119 * 186.45742 * 12 11 10 35 35 H 1.09004 * 109.62324 * 65.88263 * 12 11 10 36 36 H 1.08999 * 109.46919 * 59.99694 * 16 14 13 37 37 H 1.09002 * 109.47084 * 299.99829 * 16 14 13 38 38 H 1.08994 * 109.47414 * 59.99497 * 18 17 16 39 39 H 1.09001 * 109.46785 * 299.99707 * 18 17 16 40 40 H 1.07997 * 119.99809 * 315.99607 * 19 18 17 41 41 H 1.07998 * 119.99772 * 188.11354 * 20 19 18 42 42 H 1.08001 * 120.07218 * 0.03099 * 22 21 20 43 43 H 1.07994 * 119.92974 * 180.25795 * 23 22 21 44 44 H 1.07996 * 119.85387 * 179.76569 * 24 23 22 45 45 H 1.08000 * 119.92478 * 180.02562 * 25 24 23 46 46 H 1.07994 * 120.07018 * 180.02562 * 26 25 24 47 47 H 1.09007 * 109.62890 * 68.25781 * 27 13 12 48 48 H 1.09002 * 109.62940 * 188.83424 * 27 13 12 49 49 H 1.09001 * 109.48674 * 292.70117 * 28 10 9 50 50 H 1.08996 * 109.49502 * 52.78535 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.3999 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5213 -4.8934 0.2377 12 6 2.5638 -6.0032 0.4104 13 7 3.4616 -5.9862 -0.7544 14 6 3.7119 -7.1123 -1.4513 15 8 3.1944 -8.1580 -1.1202 16 6 4.6347 -7.0722 -2.6420 17 8 4.7394 -8.3802 -3.2080 18 6 5.5965 -8.4529 -4.3490 19 6 5.6318 -9.8698 -4.8612 20 6 5.5455 -10.1064 -6.1628 21 6 5.5891 -8.9832 -7.1226 22 6 4.8318 -9.0324 -8.2935 23 6 4.8733 -7.9786 -9.1832 24 6 5.6717 -6.8795 -8.9213 25 6 6.4290 -6.8269 -7.7647 26 6 6.3927 -7.8720 -6.8647 27 6 4.0837 -4.7090 -1.1350 28 6 2.9767 -3.6490 -1.2505 29 1 -0.4850 0.8401 0.0004 30 1 0.6240 -2.5568 -0.8902 31 1 0.6248 -2.5570 0.8897 32 1 0.8796 -5.1264 -0.6122 33 1 0.9161 -4.8191 1.1412 34 1 2.0632 -6.9693 0.4730 35 1 3.1395 -5.8264 1.3190 36 1 5.6213 -6.7334 -2.3258 37 1 4.2360 -6.3842 -3.3876 38 1 6.6028 -8.1425 -4.0679 39 1 5.2179 -7.7938 -5.1303 40 1 5.7275 -10.6923 -4.1680 41 1 5.4387 -11.1194 -6.5215 42 1 4.2113 -9.8917 -8.5010 43 1 4.2844 -8.0136 -10.0878 44 1 5.7036 -6.0588 -9.6227 45 1 7.0499 -5.9659 -7.5660 46 1 6.9839 -7.8295 -5.9620 47 1 4.8027 -4.4102 -0.3721 48 1 4.5885 -4.8192 -2.0947 49 1 2.3148 -3.8993 -2.0795 50 1 3.4272 -2.6722 -1.4262 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602206336.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:42 Heat of formation + Delta-G solvation = -36.434322 kcal Electronic energy + Delta-G solvation = -29072.080445 eV Core-core repulsion = 25064.391144 eV Total energy + Delta-G solvation = -4007.689301 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.30161 -40.36886 -39.25306 -38.40949 -35.99904 -35.61855 -34.42412 -32.42288 -31.95527 -30.90374 -30.22687 -29.08428 -27.30129 -26.57034 -24.64955 -23.82211 -23.43818 -23.21913 -22.12998 -20.45036 -19.86134 -18.64368 -18.48663 -17.63477 -17.50216 -17.45553 -16.84072 -16.61468 -16.41904 -16.08599 -15.99470 -15.73823 -15.45683 -15.31560 -15.22190 -14.79899 -14.41591 -14.27028 -14.21002 -14.00226 -13.56743 -13.53814 -13.34510 -13.16813 -13.02536 -12.75090 -12.59862 -12.55285 -12.39136 -12.31404 -12.12791 -11.94798 -11.77585 -11.66999 -11.27895 -11.13386 -10.82504 -10.61335 -10.53068 -9.81674 -9.79219 -9.20603 -9.07390 -8.19371 -6.29927 0.04114 0.49440 1.28849 1.44364 1.46002 1.48701 1.57288 1.74586 2.41873 2.82986 2.97278 3.13137 3.22067 3.48115 3.78794 3.92969 3.97255 4.01855 4.07575 4.10579 4.17102 4.19059 4.22359 4.25384 4.27731 4.35161 4.39474 4.44318 4.52949 4.58923 4.61431 4.72101 4.82092 4.83373 4.93785 5.01395 5.05343 5.15464 5.19335 5.21797 5.38259 5.39250 5.42711 5.62495 5.64589 5.64741 5.76996 6.02099 6.03744 6.10618 6.22881 6.38429 6.54936 6.86235 7.05956 7.40302 8.92065 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010926 B = 0.002147 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.077332 B =13037.311145 C =14882.154254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.001 4.001 3 Si 0.971 3.029 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.260 1.260 7 C -0.520 4.520 8 H 0.072 0.928 9 C 0.208 3.792 10 N -0.538 5.538 11 C 0.043 3.957 12 C 0.128 3.872 13 N -0.609 5.609 14 C 0.511 3.489 15 O -0.575 6.575 16 C 0.049 3.951 17 O -0.393 6.393 18 C 0.077 3.923 19 C -0.149 4.149 20 C -0.109 4.109 21 C -0.080 4.080 22 C -0.121 4.121 23 C -0.130 4.130 24 C -0.128 4.128 25 C -0.129 4.129 26 C -0.125 4.125 27 C 0.117 3.883 28 C 0.047 3.953 29 H 0.263 0.737 30 H -0.042 1.042 31 H 0.004 0.996 32 H 0.013 0.987 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.117 0.883 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.127 0.873 41 H 0.142 0.858 42 H 0.134 0.866 43 H 0.139 0.861 44 H 0.139 0.861 45 H 0.142 0.858 46 H 0.137 0.863 47 H 0.094 0.906 48 H 0.120 0.880 49 H 0.015 0.985 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.863 -16.128 -16.126 28.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.199 4.199 3 Si 0.796 3.204 4 H -0.197 1.197 5 H -0.214 1.214 6 H -0.184 1.184 7 C -0.558 4.558 8 H 0.090 0.910 9 C 0.081 3.919 10 N -0.263 5.263 11 C -0.086 4.086 12 C 0.005 3.995 13 N -0.343 5.343 14 C 0.300 3.700 15 O -0.455 6.455 16 C -0.030 4.030 17 O -0.312 6.312 18 C 0.002 3.998 19 C -0.167 4.167 20 C -0.126 4.126 21 C -0.080 4.080 22 C -0.139 4.139 23 C -0.148 4.148 24 C -0.146 4.146 25 C -0.147 4.147 26 C -0.142 4.142 27 C -0.005 4.005 28 C -0.082 4.082 29 H 0.072 0.928 30 H -0.024 1.024 31 H 0.022 0.978 32 H 0.031 0.969 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.134 0.866 37 H 0.117 0.883 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.145 0.855 41 H 0.160 0.840 42 H 0.152 0.848 43 H 0.156 0.844 44 H 0.156 0.844 45 H 0.160 0.840 46 H 0.155 0.845 47 H 0.112 0.888 48 H 0.138 0.862 49 H 0.033 0.967 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 16.683 -16.659 -15.499 28.215 hybrid contribution -1.028 0.976 -0.537 1.516 sum 15.655 -15.683 -16.036 27.354 Atomic orbital electron populations 1.70102 1.07962 1.27906 1.51850 1.25961 0.95682 1.03409 0.94839 0.85346 0.78615 0.78017 0.78423 1.19722 1.21358 1.18427 1.21456 0.93906 0.90528 1.49884 0.90957 1.19382 0.90120 0.89000 0.93354 1.62017 1.26981 1.02395 1.34882 1.22431 0.95606 0.90119 1.00415 1.21606 0.91386 0.98158 0.88317 1.48260 1.46893 1.08968 1.30208 1.20869 0.82040 0.82795 0.84300 1.90672 1.53141 1.31650 1.70004 1.22328 1.00283 0.86634 0.93743 1.87970 1.68635 1.28194 1.46417 1.22187 0.94388 0.96169 0.87028 1.23083 1.00297 0.97281 0.96045 1.21842 1.00152 0.98359 0.92291 1.19323 0.98237 0.95068 0.95389 1.21527 0.98978 0.99680 0.93701 1.21415 0.99397 0.93926 1.00081 1.21574 0.96481 0.98711 0.97859 1.21425 0.99736 0.99203 0.94316 1.21701 0.99114 0.93375 1.00052 1.22218 0.94655 0.80405 1.03177 1.22500 0.95660 1.00336 0.89724 0.92784 1.02412 0.97829 0.96886 0.90028 0.89593 0.89524 0.86580 0.88320 0.89848 0.91157 0.85537 0.84038 0.84840 0.84350 0.84356 0.83996 0.84504 0.88810 0.86205 0.96717 0.89101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.58 13.29 21.45 0.28 -55.29 16 2 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 3 Si 0.97 42.42 29.54 68.60 2.03 44.45 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 5 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 7 C -0.52 -27.96 8.41 25.60 0.22 -27.74 16 8 H 0.07 3.69 7.13 -2.91 -0.02 3.67 16 9 C 0.21 10.76 4.72 85.56 0.40 11.16 16 10 N -0.54 -22.00 4.62 -898.90 -4.15 -26.15 16 11 C 0.04 1.57 5.62 86.38 0.49 2.06 16 12 C 0.13 3.91 6.60 86.35 0.57 4.48 16 13 N -0.61 -17.10 3.00 -817.07 -2.45 -19.55 16 14 C 0.51 15.02 7.78 87.66 0.68 15.70 16 15 O -0.58 -22.09 15.95 16.02 0.26 -21.83 16 16 C 0.05 1.01 4.78 71.24 0.34 1.35 16 17 O -0.39 -9.73 9.86 -129.94 -1.28 -11.01 16 18 C 0.08 1.31 4.52 71.24 0.32 1.64 16 19 C -0.15 -2.49 9.84 24.54 0.24 -2.25 16 20 C -0.11 -1.62 9.81 23.65 0.23 -1.39 16 21 C -0.08 -1.28 5.18 -20.12 -0.10 -1.38 16 22 C -0.12 -1.82 9.79 22.52 0.22 -1.60 16 23 C -0.13 -1.78 10.03 22.24 0.22 -1.56 16 24 C -0.13 -1.68 10.04 22.32 0.22 -1.46 16 25 C -0.13 -1.68 10.03 22.23 0.22 -1.46 16 26 C -0.12 -1.78 7.41 22.52 0.17 -1.61 16 27 C 0.12 2.79 6.53 86.50 0.57 3.36 16 28 C 0.05 1.59 5.47 86.54 0.47 2.06 16 29 H 0.26 14.73 8.31 -92.70 -0.77 13.96 16 30 H -0.04 -2.40 8.12 -2.39 -0.02 -2.42 16 31 H 0.00 0.20 7.97 -2.39 -0.02 0.18 16 32 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 33 H 0.08 2.91 7.99 -2.39 -0.02 2.89 16 34 H 0.09 2.71 7.06 -2.39 -0.02 2.69 16 35 H 0.09 2.45 8.14 -2.38 -0.02 2.43 16 36 H 0.12 1.53 7.99 -2.39 -0.02 1.52 16 37 H 0.10 1.66 7.67 -2.39 -0.02 1.64 16 38 H 0.08 0.99 7.52 -2.39 -0.02 0.98 16 39 H 0.07 1.18 5.28 -2.39 -0.01 1.17 16 40 H 0.13 2.05 8.06 -2.91 -0.02 2.03 16 41 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 42 H 0.13 1.60 8.06 -2.91 -0.02 1.58 16 43 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 44 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 45 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 46 H 0.14 1.53 5.80 -2.91 -0.02 1.51 16 47 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 48 H 0.12 1.87 6.02 -2.39 -0.01 1.85 16 49 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 50 H 0.09 3.23 6.67 -2.39 -0.02 3.21 16 Total: -1.00 -74.47 404.05 1.55 -72.92 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.92 Total: 14.72 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: 5.95 Total: 1.75 kcal Atomic # 7 Polarization: -94.68 SS G_CDS: -6.32 Total: -101.00 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -1.03 Total: -32.85 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -74.47 1.55 -72.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602206336.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.490 kcal (2) G-P(sol) polarization free energy of solvation -74.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds