Wall clock time and date at job start Wed Apr 1 2020 02:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 119.99707 * 2 1 4 4 H 1.48496 * 109.47227 * 240.00010 * 3 2 1 5 5 H 1.48505 * 109.47370 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47123 * 120.00323 * 3 2 1 7 7 C 1.38805 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99878 * 163.12335 * 7 2 1 9 9 N 1.36933 * 120.00459 * 343.12018 * 7 2 1 10 10 C 1.46927 * 120.63441 * 151.60044 * 9 7 2 11 11 C 1.53188 * 108.77851 * 126.66907 * 10 9 7 12 12 C 1.53044 * 109.31327 * 54.63341 * 11 10 9 13 13 N 1.46497 * 109.46366 * 178.61354 * 12 11 10 14 14 C 1.34771 * 120.00213 * 275.07550 * 13 12 11 15 15 O 1.21280 * 120.00250 * 359.97438 * 14 13 12 16 16 C 1.50707 * 119.99975 * 179.97438 * 14 13 12 17 17 C 1.53002 * 109.47007 * 179.97438 * 16 14 13 18 18 H 1.09000 * 109.33407 * 55.32456 * 17 16 14 19 19 O 1.42723 * 109.33718 * 295.81395 * 17 16 14 20 20 C 1.43211 * 113.13975 * 188.05720 * 19 17 16 21 21 C 1.52970 * 108.46838 * 70.70150 * 20 19 17 22 22 C 1.50746 * 109.75115 * 310.77031 * 21 20 19 23 23 C 1.38596 * 118.76046 * 196.87458 * 22 21 20 24 24 C 1.38071 * 120.27936 * 180.24523 * 23 22 21 25 25 C 1.38258 * 119.85927 * 359.97438 * 24 23 22 26 26 C 1.38060 * 119.89695 * 359.92014 * 25 24 23 27 27 C 1.37900 * 121.35215 * 16.95510 * 22 21 20 28 28 C 1.53039 * 109.54148 * 298.64054 * 12 11 10 29 29 C 1.46927 * 120.62742 * 331.88447 * 9 7 2 30 30 H 0.96995 * 120.00418 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.59069 * 246.45795 * 10 9 7 32 32 H 1.08998 * 109.58537 * 6.88094 * 10 9 7 33 33 H 1.09007 * 109.49933 * 294.68720 * 11 10 9 34 34 H 1.08994 * 109.53164 * 174.60439 * 11 10 9 35 35 H 1.09003 * 109.45737 * 58.65696 * 12 11 10 36 36 H 0.97000 * 119.99822 * 95.06630 * 13 12 11 37 37 H 1.08997 * 109.47000 * 299.99619 * 16 14 13 38 38 H 1.09000 * 109.46680 * 59.99883 * 16 14 13 39 39 H 1.09000 * 109.63394 * 311.00801 * 20 19 17 40 40 H 1.08995 * 109.63716 * 190.39393 * 20 19 17 41 41 H 1.08995 * 109.42339 * 190.68541 * 21 20 19 42 42 H 1.08995 * 109.42584 * 70.85202 * 21 20 19 43 43 H 1.08003 * 119.86251 * 0.21964 * 23 22 21 44 44 H 1.07999 * 120.07291 * 180.02562 * 24 23 22 45 45 H 1.07997 * 120.05383 * 179.91598 * 25 24 23 46 46 H 1.08006 * 119.84877 * 180.02562 * 26 25 24 47 47 H 1.09003 * 109.49444 * 301.41178 * 28 12 11 48 48 H 1.08991 * 109.52801 * 181.32965 * 28 12 11 49 49 H 1.08994 * 109.59079 * 353.11675 * 29 9 7 50 50 H 1.09005 * 109.58588 * 113.54517 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0554 -1.2221 -0.2721 9 7 1.3699 -2.3626 0.3433 10 6 1.8110 -3.6521 -0.2059 11 6 2.0605 -4.6222 0.9531 12 6 0.8037 -4.7062 1.8224 13 7 1.0273 -5.6583 2.9131 14 6 0.8208 -6.9748 2.7113 15 8 0.4494 -7.3712 1.6270 16 6 1.0514 -7.9543 3.8332 17 6 0.7462 -9.3714 3.3437 18 1 1.3430 -9.5832 2.4565 19 8 -0.6386 -9.4688 3.0121 20 6 -1.0542 -10.8075 2.7187 21 6 -1.0509 -11.6121 4.0197 22 6 0.2571 -11.4088 4.7411 23 6 0.6134 -12.3010 5.7400 24 6 1.8019 -12.1416 6.4244 25 6 2.6403 -11.0876 6.1116 26 6 2.2871 -10.1997 5.1152 27 6 1.0942 -10.3591 4.4267 28 6 0.4920 -3.3262 2.4061 29 6 0.2248 -2.3414 1.2635 30 1 -0.4850 0.8400 0.0004 31 1 1.0372 -4.0549 -0.8594 32 1 2.7328 -3.5126 -0.7706 33 1 2.8956 -4.2633 1.5547 34 1 2.2956 -5.6101 0.5571 35 1 -0.0366 -5.0415 1.2145 36 1 1.3242 -5.3413 3.7804 37 1 2.0905 -7.8974 4.1573 38 1 0.3961 -7.7100 4.6692 39 1 -0.3621 -11.2583 2.0075 40 1 -2.0597 -10.7951 2.2983 41 1 -1.1785 -12.6703 3.7918 42 1 -1.8709 -11.2775 4.6550 43 1 -0.0415 -13.1244 5.9844 44 1 2.0764 -12.8391 7.2019 45 1 3.5700 -10.9591 6.6459 46 1 2.9428 -9.3768 4.8712 47 1 1.3419 -2.9795 2.9940 48 1 -0.3893 -3.3912 3.0441 49 1 0.0999 -1.3372 1.6685 50 1 -0.6785 -2.6373 0.7298 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609644128.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:04 Heat of formation + Delta-G solvation = -61.525182 kcal Electronic energy + Delta-G solvation = -29987.451208 eV Core-core repulsion = 25978.673886 eV Total energy + Delta-G solvation = -4008.777323 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.58336 -40.65381 -38.98371 -38.34258 -35.96130 -34.74740 -33.91056 -33.16963 -31.86874 -31.38976 -30.70828 -29.35523 -26.94989 -25.36746 -24.72278 -23.96282 -23.64189 -22.65185 -21.29748 -20.98195 -20.81263 -18.89832 -18.39392 -17.75633 -17.40359 -17.07247 -16.78639 -16.58620 -16.28106 -15.86888 -15.56919 -15.35805 -15.32640 -15.08519 -14.79308 -14.66229 -14.32832 -14.28637 -14.19004 -13.99746 -13.47573 -13.32488 -13.15813 -13.05775 -12.97526 -12.64635 -12.56681 -12.54202 -12.36827 -12.22175 -12.03302 -11.88673 -11.84219 -11.55414 -11.54023 -11.34488 -10.80377 -10.55164 -10.54275 -9.94397 -9.69437 -9.53591 -8.71232 -7.87638 -5.34060 0.36785 0.45294 1.48886 1.50797 1.58084 1.74966 2.22882 2.52163 2.73825 2.87993 3.27861 3.54842 3.66011 3.66706 3.82611 3.87527 3.92545 4.02111 4.09752 4.15435 4.24635 4.30463 4.33058 4.34627 4.45362 4.46549 4.60858 4.63711 4.65250 4.69190 4.81449 4.83531 4.86875 4.89889 4.97625 5.05441 5.06077 5.09435 5.15972 5.17686 5.29728 5.46724 5.52342 5.60998 5.61484 5.64052 5.64405 5.70440 6.08641 6.21268 6.38654 6.68490 7.13971 7.38775 7.83452 8.37000 9.19296 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.027208 B = 0.001980 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.847394 B =14134.781307 C =14627.936192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.052 4.052 3 Si 0.971 3.029 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.274 1.274 7 C -0.264 4.264 8 H 0.068 0.932 9 N -0.609 5.609 10 C 0.144 3.856 11 C -0.122 4.122 12 C 0.163 3.837 13 N -0.714 5.714 14 C 0.510 3.490 15 O -0.575 6.575 16 C -0.123 4.123 17 C 0.148 3.852 18 H 0.059 0.941 19 O -0.386 6.386 20 C 0.052 3.948 21 C -0.111 4.111 22 C -0.088 4.088 23 C -0.126 4.126 24 C -0.121 4.121 25 C -0.127 4.127 26 C -0.118 4.118 27 C -0.130 4.130 28 C -0.128 4.128 29 C 0.179 3.821 30 H 0.251 0.749 31 H 0.004 0.996 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.414 0.586 37 H 0.141 0.859 38 H 0.116 0.884 39 H 0.051 0.949 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.087 0.913 43 H 0.140 0.860 44 H 0.145 0.855 45 H 0.145 0.855 46 H 0.141 0.859 47 H 0.072 0.928 48 H 0.074 0.926 49 H 0.063 0.937 50 H -0.009 1.009 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.557 -26.316 17.148 31.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.799 3.201 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.200 1.200 7 C -0.394 4.394 8 H 0.086 0.914 9 N -0.332 5.332 10 C 0.018 3.982 11 C -0.162 4.162 12 C 0.058 3.942 13 N -0.366 5.366 14 C 0.297 3.703 15 O -0.454 6.454 16 C -0.162 4.162 17 C 0.090 3.910 18 H 0.077 0.923 19 O -0.305 6.305 20 C -0.024 4.024 21 C -0.148 4.148 22 C -0.088 4.088 23 C -0.144 4.144 24 C -0.139 4.139 25 C -0.145 4.145 26 C -0.135 4.135 27 C -0.130 4.130 28 C -0.167 4.167 29 C 0.052 3.948 30 H 0.060 0.940 31 H 0.022 0.978 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.250 0.750 37 H 0.158 0.842 38 H 0.134 0.866 39 H 0.070 0.930 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.105 0.895 43 H 0.158 0.842 44 H 0.163 0.837 45 H 0.163 0.837 46 H 0.159 0.841 47 H 0.091 0.909 48 H 0.093 0.907 49 H 0.082 0.918 50 H 0.009 0.991 Dipole moment (debyes) X Y Z Total from point charges 3.064 -26.300 16.358 31.123 hybrid contribution 0.208 1.028 -0.245 1.077 sum 3.272 -25.272 16.113 30.149 Atomic orbital electron populations 1.70187 1.06745 1.26055 1.55254 1.25864 0.96077 1.01674 1.01078 0.85289 0.77493 0.78907 0.78418 1.20270 1.22105 1.20021 1.19490 0.92869 0.85785 1.41288 0.91410 1.44357 1.35903 1.02273 1.50694 1.20972 0.97269 0.86067 0.93942 1.22148 0.97818 0.98488 0.97711 1.20585 0.96990 0.88351 0.88289 1.46056 1.68961 1.06036 1.15561 1.21066 0.76129 0.83355 0.89737 1.90707 1.47221 1.79088 1.28417 1.21848 1.06398 0.90811 0.97147 1.20476 0.83485 0.92797 0.94229 0.92317 1.88127 1.24681 1.28449 1.89218 1.22758 1.01354 0.82252 0.96043 1.21148 0.94863 1.02169 0.96596 1.19767 0.96376 0.95060 0.97639 1.21334 0.97838 0.99425 0.95799 1.21488 0.94191 0.98345 0.99832 1.21437 1.00659 0.94789 0.97599 1.21325 0.95682 1.00367 0.96164 1.20207 0.96633 0.97228 0.98972 1.22243 1.01920 0.93763 0.98817 1.20563 0.87634 0.97728 0.88853 0.94007 0.97844 0.92344 0.91266 0.92274 0.93064 0.74962 0.84181 0.86629 0.93042 0.87526 0.87749 0.89460 0.84213 0.83746 0.83679 0.84127 0.90936 0.90733 0.91845 0.99062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.86 11.20 21.65 0.24 -55.62 16 2 C -0.05 -2.89 4.92 84.86 0.42 -2.48 16 3 Si 0.97 44.75 29.59 68.60 2.03 46.78 16 4 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.26 -14.65 9.58 84.03 0.81 -13.84 16 8 H 0.07 3.64 7.89 -2.91 -0.02 3.62 16 9 N -0.61 -31.27 2.99 -699.10 -2.09 -33.36 16 10 C 0.14 6.37 6.51 86.36 0.56 6.93 16 11 C -0.12 -4.40 5.65 30.67 0.17 -4.23 16 12 C 0.16 5.67 2.42 45.02 0.11 5.78 16 13 N -0.71 -18.76 5.08 -442.40 -2.25 -21.00 16 14 C 0.51 14.32 7.67 87.66 0.67 14.99 16 15 O -0.58 -21.88 15.05 11.61 0.17 -21.71 16 16 C -0.12 -2.33 5.10 29.85 0.15 -2.18 16 17 C 0.15 3.32 2.28 29.83 0.07 3.39 16 18 H 0.06 1.50 7.96 -2.39 -0.02 1.48 16 19 O -0.39 -10.27 9.60 -134.34 -1.29 -11.57 16 20 C 0.05 1.03 6.85 71.97 0.49 1.52 16 21 C -0.11 -1.65 6.00 29.85 0.18 -1.47 16 22 C -0.09 -1.51 5.78 -19.84 -0.11 -1.62 16 23 C -0.13 -1.69 9.67 22.32 0.22 -1.47 16 24 C -0.12 -1.40 10.05 22.23 0.22 -1.18 16 25 C -0.13 -1.52 10.05 22.23 0.22 -1.30 16 26 C -0.12 -1.69 9.08 22.33 0.20 -1.49 16 27 C -0.13 -2.39 5.46 -19.86 -0.11 -2.50 16 28 C -0.13 -4.64 5.55 30.67 0.17 -4.47 16 29 C 0.18 8.71 5.29 86.36 0.46 9.17 16 30 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 31 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.06 2.51 7.93 -2.39 -0.02 2.49 16 33 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 34 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.05 2.13 7.58 -2.39 -0.02 2.11 16 36 H 0.41 7.83 8.60 -92.71 -0.80 7.04 16 37 H 0.14 1.67 6.33 -2.39 -0.02 1.65 16 38 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.05 1.00 8.07 -2.39 -0.02 0.98 16 40 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.14 1.26 8.06 -2.91 -0.02 1.23 16 44 H 0.14 0.96 8.06 -2.91 -0.02 0.94 16 45 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16 46 H 0.14 1.46 6.46 -2.91 -0.02 1.44 16 47 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 48 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 49 H 0.06 3.44 6.07 -2.39 -0.01 3.42 16 50 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 Total: -1.00 -74.81 393.54 1.86 -72.95 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.14 Total: 19.97 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 4.90 Total: 3.55 kcal Atomic # 7 Polarization: -105.89 SS G_CDS: -4.10 Total: -109.98 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -1.12 Total: -33.27 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -74.81 1.86 -72.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609644128.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.429 kcal (2) G-P(sol) polarization free energy of solvation -74.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds